Ec-28_003020.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003020.1
Unique NameEc-28_003020.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length59
Homology
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BLAST of Ec-28_003020.1 vs. uniprot
Match: D8LTS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS3_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.140e-36
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MYRGGLVIVRCNSGPSVRHADDGALPTVPSLLVDTVDCENQDRLAKTLRGQRRLPRRW 174
            MYRGGLVIVRCNSGPSVRHADDGALPTVPSLLVDTVDCENQDRLAKTLRGQRRLPRRW
Sbjct:    1 MYRGGLVIVRCNSGPSVRHADDGALPTVPSLLVDTVDCENQDRLAKTLRGQRRLPRRW 58
The following BLAST results are available for this feature:
BLAST of Ec-28_003020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTS3_ECTSI4.140e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2789902..2790643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length177
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-28_003020.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003020Ec-28_003020Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 2789902..2790643 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003020.1.1Ec-28_003020.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2789902..2790006 +
Ec-28_003020.1.2Ec-28_003020.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2790572..2790643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003020.1CDS:Ec-28_003020.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 2789902..2790006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003020.1Ec-28_003020.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 2789902..2790643 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003020.1 ID=Ec-28_003020.1|Name=Ec-28_003020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=59bp
MYRGGLVIVRCNSGPSVRHADDGALPTVPSLLVDTVDCENQDRLAKTLRG
QRRLPRRW*
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spliced messenger RNA

>Ec-28_003020.1 ID=Ec-28_003020.1|Name=Ec-28_003020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=177bp|location=Sequence derived from alignment at chr_28:2789902..2790643+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGAGGAGGTCTTGTTATCGTGCGCTGTAATAGTGGCCCTTCCGT
GAGGCACGCCGATGATGGAGCACTCCCTACGGTGCCGTCGCTACTTGTGG
ACACGGTGGACTGCGAGAACCAAGACCGTCTTGCAAAGACCCTGAGAGGC
CAGAGACGACTGCCGAGGAGATGGTGA
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protein sequence of Ec-28_003020.1

>Ec-28_003020.1 ID=Ec-28_003020.1|Name=Ec-28_003020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=59bp
MYRGGLVIVRCNSGPSVRHADDGALPTVPSLLVDTVDCENQDRLAKTLRG
QRRLPRRW*
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mRNA from alignment at chr_28:2789902..2790643+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003020.1 ID=Ec-28_003020.1|Name=Ec-28_003020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=742bp|location=Sequence derived from alignment at chr_28:2789902..2790643+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTATCGAGGAGGTCTTGTTATCGTGCGCTGTAATAGTGGCCCTTCCGT
GAGGCACGCCGATGATGGAGCACTCCCTACGGTGCCGTCGCTACTTGTGG
ACACGGTGAGTCATCTCGGTGCGCCTTCGCCAGAAATTATATTCATGAGG
AAATAGAATAGGGAGGGGGTACGCAGACCGTATCCCTAACCCTACCCCAA
CTTCCCCGATCGCATGCTTCATCCAACATGTTTCCTTAAACGAAAGAGCC
GGCGAAGGTCGGTTCGATGTACACCCTTACCTAACTGCCAGCTCATTGAT
AGGGTAGGAGTGCGTGCGTGTCTTCGTTGTTTGCATCGACGCGCTAACCG
GCTGGCCAATGAAAAAACGCCGGCCTCTGTGCGACTACAAACGGAAAATG
CGCCTGTAGGCCACGATCTCTGGGCCCCCGTGTGAGTTGTCGTCCCATGT
TGTTTTATTAAAGGCGCCAATACACACAAAACGTCCTAGCGCCAGTACAC
ACTAAAACCGCTGAAACCCTGACCAAGCGGTGAGCAATGCGATGACTATT
AATACCAACACACAAGGCACGCCTCCTCAGGCAACAGCAAGGAAGGCGCC
GTCTCGTTGGCTTGAGATGCGCGAGTCGTCGCTTGACACGAAAACGCATT
GCTGCGGCGGCACCCAGCAGGTGGACTGCGAGAACCAAGACCGTCTTGCA
AAGACCCTGAGAGGCCAGAGACGACTGCCGAGGAGATGGTGA
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Coding sequence (CDS) from alignment at chr_28:2789902..2790643+

>Ec-28_003020.1 ID=Ec-28_003020.1|Name=Ec-28_003020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=177bp|location=Sequence derived from alignment at chr_28:2789902..2790643+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTATCGAGGAGGTCTTGTTATCGTGCGCTGTAATAGTGGCCCTTCCGT
GAGGCACGCCGATGATGGAGCACTCCCTACGGTGCCGTCGCTACTTGTGG
ACACGGTGGACTGCGAGAACCAAGACCGTCTTGCAAAGACCCTGAGAGGC
CAGAGACGACTGCCGAGGAGATGGTGA
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Synonyms
The feature 'Ec-28_003020.1' has the following synonyms
Synonym
Esi0009_0136
Esi_0009_0136