Ec-27_005570.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:5059307..5062425 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_27:5059307..5062425-
coding sequence from alignment at chr_27:5059307..5062425-

mRNA sequence

>Ec-27_005570.1 ID=Ec-27_005570.1|Name=Ec-27_005570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=751bp
MLAVASSMDAGRSWGLLSAGSSMIHTTTRAWAPPASPMAYSGERQAASPM
AQNLARQRGSKAPRRRHSQAPHRRTGSSSIARGGGGEATVVQTVVSSGGG
AKASGGRRDAEGTGVATSYGSGSSSGGGVESNIHPRSQERPVRDAKGGQH
EATTRASSGNGASSGSGRGSRGVAGCGEAWGATSVTTARSPSERARSGGA
STGRGGKSSNSPEAWAWAGGSGGAARGRAMLSAYGLQSDKHNPTCPRGTP
SDNGVARHARWQRDQNGGCSRKLEGGGSSSGNEGGRRVGGDEENGCTGTA
ESHCAGSDVDLAGDDTSGQASAAHVHKVCRGKGHKQRQSVAPHRRSTATS
DRCSSGDCSSSYGDASAECSIAGDISPAQKDHRNAPDGFLGNMMATAASF
RESARPAGKKSVNNHAQPEVFLVPPRGSTASPHQSNCYAAGSGPPAVAAT
SGHVEILTMDGRGGSAAPLHRPQLSLKASSSASYAPVLPGLSTGTGAGAG
VIDTAEVGSGDGVGEGGGSGVAEDSHSTPPVSRQRSHSHHSPWQARKQSR
GLPRSRGGAGVGRHHHHSEERRLLEKRPSSGSTAGRLGSCFSSESTERAT
PFFSSPNSASAAAVAGAASEPKHDCSSTASAVVARRQQQGGGERNPFDRL
LHPRHHDGEKASSCPSAAGGGAVAAAPHSELIDRFKMATRPTSRRGTRKQ
GGGEGECAPEPAFCLFSRGGVVGGSAAGGGRGRGAEEEERRRSSREYGTH
*

spliced messenger RNA

>Ec-27_005570.1 ID=Ec-27_005570.1|Name=Ec-27_005570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2253bp|location=Sequence derived from alignment at chr_27:5059307..5062425- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGCCGTTGCTTCTTCCATGGATGCAGGCAGGTCGTGGGGACTCCT
GTCTGCTGGCAGCTCGATGATACATACTACTACCAGGGCATGGGCCCCCC
CGGCATCGCCCATGGCGTACTCAGGGGAACGCCAGGCAGCGTCGCCGATG
GCTCAGAACCTTGCCAGACAACGGGGGTCGAAAGCACCGCGCCGTCGGCA
TTCCCAGGCACCACACCGAAGAACCGGGAGCAGCAGCATCGCCAGGGGGG
GCGGCGGCGAAGCCACCGTCGTACAAACCGTAGTGTCTTCGGGAGGGGGA
GCGAAAGCGAGTGGCGGTCGTCGAGACGCTGAAGGCACGGGTGTGGCCAC
GAGTTATGGCAGCGGCAGCAGCAGCGGCGGCGGCGTCGAGAGCAACATAC
ATCCTCGATCCCAGGAGCGTCCTGTGCGGGACGCAAAAGGAGGGCAGCAC
GAGGCAACTACTAGAGCAAGCAGTGGCAACGGGGCGAGCAGCGGTAGTGG
CAGAGGTTCAAGGGGGGTCGCCGGGTGCGGTGAAGCCTGGGGGGCAACAT
CGGTGACGACAGCTCGGAGTCCCTCTGAACGGGCACGCAGCGGCGGAGCA
AGCACGGGGCGAGGGGGTAAGAGCTCGAACAGTCCAGAGGCCTGGGCATG
GGCCGGAGGGAGCGGGGGGGCGGCTAGAGGGCGGGCAATGCTCAGCGCGT
ACGGCCTCCAATCCGACAAACACAACCCAACCTGCCCGCGAGGTACCCCT
AGCGACAACGGTGTAGCGAGGCACGCACGCTGGCAACGCGATCAGAACGG
AGGATGTTCGCGGAAGTTGGAGGGCGGTGGCAGCAGCAGTGGAAACGAAG
GTGGCCGAAGAGTCGGAGGCGACGAAGAAAATGGCTGCACTGGAACGGCC
GAATCACACTGCGCCGGTAGCGATGTTGATCTTGCTGGCGATGATACGTC
GGGCCAAGCTTCGGCCGCTCACGTTCACAAGGTTTGTCGCGGTAAGGGTC
ATAAGCAGCGCCAATCTGTTGCTCCTCACCGAAGATCGACCGCGACTAGC
GATAGATGCTCCTCCGGAGATTGCTCGTCTAGCTACGGGGATGCTTCAGC
GGAATGCTCCATCGCCGGTGATATTTCTCCCGCACAGAAAGACCATCGAA
ATGCACCGGATGGATTCTTGGGCAACATGATGGCCACTGCCGCAAGCTTT
CGAGAAAGTGCCAGACCAGCAGGAAAGAAAAGTGTCAATAATCACGCGCA
GCCAGAGGTGTTTCTCGTGCCTCCTCGCGGTTCAACCGCGTCACCGCACC
AATCCAATTGCTACGCTGCAGGCTCGGGACCGCCGGCCGTGGCAGCAACC
TCCGGACACGTGGAAATCCTAACCATGGACGGCAGGGGCGGGAGCGCGGC
ACCCTTGCACCGACCGCAACTAAGCCTCAAGGCATCTTCTTCCGCTTCAT
ACGCACCCGTCCTGCCCGGCCTTAGCACGGGGACAGGGGCAGGAGCTGGG
GTGATCGATACCGCCGAGGTCGGTAGTGGAGACGGTGTCGGAGAGGGTGG
CGGCAGCGGCGTGGCGGAGGATAGTCACAGCACGCCGCCGGTCTCGCGAC
AGCGGTCTCACTCCCACCACTCCCCCTGGCAGGCCAGGAAGCAGTCTAGG
GGCCTCCCGCGGAGCAGAGGCGGGGCGGGAGTCGGCCGCCACCACCACCA
CTCAGAGGAGCGCCGGCTTTTGGAGAAAAGGCCGTCGTCAGGGTCTACGG
CGGGGAGGCTAGGCTCGTGCTTTTCTTCAGAATCGACGGAAAGGGCCACG
CCGTTCTTCTCCTCTCCTAATTCTGCTTCGGCGGCGGCCGTTGCGGGTGC
TGCAAGTGAGCCGAAACACGACTGCAGTAGCACCGCCAGCGCGGTGGTGG
CGCGGAGGCAGCAGCAAGGAGGGGGCGAGCGTAACCCGTTCGATCGGCTT
CTCCATCCACGCCATCATGACGGCGAGAAGGCCTCGTCTTGTCCTTCCGC
TGCAGGCGGCGGCGCGGTTGCGGCCGCACCTCACTCCGAGCTGATCGACC
GCTTCAAGATGGCTACCAGACCCACGTCGCGCCGGGGCACCCGCAAGCAG
GGAGGCGGAGAGGGCGAATGCGCCCCCGAGCCCGCGTTCTGCCTCTTCAG
TCGGGGGGGTGTTGTCGGCGGTAGCGCTGCCGGGGGTGGGAGAGGGCGGG
GCGCCGAGGAGGAGGAGCGGCGGAGAAGTAGCAGGGAGTATGGGACGCAT
TGA

protein sequence of Ec-27_005570.1

>Ec-27_005570.1 ID=Ec-27_005570.1|Name=Ec-27_005570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=751bp
MLAVASSMDAGRSWGLLSAGSSMIHTTTRAWAPPASPMAYSGERQAASPM
AQNLARQRGSKAPRRRHSQAPHRRTGSSSIARGGGGEATVVQTVVSSGGG
AKASGGRRDAEGTGVATSYGSGSSSGGGVESNIHPRSQERPVRDAKGGQH
EATTRASSGNGASSGSGRGSRGVAGCGEAWGATSVTTARSPSERARSGGA
STGRGGKSSNSPEAWAWAGGSGGAARGRAMLSAYGLQSDKHNPTCPRGTP
SDNGVARHARWQRDQNGGCSRKLEGGGSSSGNEGGRRVGGDEENGCTGTA
ESHCAGSDVDLAGDDTSGQASAAHVHKVCRGKGHKQRQSVAPHRRSTATS
DRCSSGDCSSSYGDASAECSIAGDISPAQKDHRNAPDGFLGNMMATAASF
RESARPAGKKSVNNHAQPEVFLVPPRGSTASPHQSNCYAAGSGPPAVAAT
SGHVEILTMDGRGGSAAPLHRPQLSLKASSSASYAPVLPGLSTGTGAGAG
VIDTAEVGSGDGVGEGGGSGVAEDSHSTPPVSRQRSHSHHSPWQARKQSR
GLPRSRGGAGVGRHHHHSEERRLLEKRPSSGSTAGRLGSCFSSESTERAT
PFFSSPNSASAAAVAGAASEPKHDCSSTASAVVARRQQQGGGERNPFDRL
LHPRHHDGEKASSCPSAAGGGAVAAAPHSELIDRFKMATRPTSRRGTRKQ
GGGEGECAPEPAFCLFSRGGVVGGSAAGGGRGRGAEEEERRRSSREYGTH
*

mRNA from alignment at chr_27:5059307..5062425-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-27_005570.1 ID=Ec-27_005570.1|Name=Ec-27_005570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3119bp|location=Sequence derived from alignment at chr_27:5059307..5062425- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTAGCCGTTGCTTCTTCCATGGATGCAGGCAGGTCGTGGGGACTCCT
GTCTGCTGGCAGCTCGATGATACATACTACTACCAGGGTGAGGTATCGGT
CGGACGTGAACTTGCGGATACCCCCACACCGTACAGGAGACAGGATGGCA
TTAGGACCCGTATGCACCACGCACAGGCTGTTGGCTCTACTACCGTACAC
TGACAGCATCACACACGCATGCATGCACTCGTTACCCCTGGAACAGCAGC
ATCCTCGTCCCAGTTGAATTCATGAGAATAGCTTGCATTTGCGAACACAA
ACTTGCCGGAGTGGAAGCTCAGATTTAAACTACCCTAGGGTACTGTCCGG
TAACACCCTCATCGTGCTTCTATGTATCTTTTTGTCAACTACCGCCGAGA
GTATGTACGATTCATTTTTCACGCTACTGTACATCCTACGTTGAGGCCCC
TTTCAAAGTTTGTTTGCCCAGGCGAGCACGAAACTCGTAGAGTTTTCCAG
AGGTGCTAACGTGCTTGACACGATGTGGCCTACCGTAACAATGCCCTACC
CGCCCTAGACCCGATCATATGGAACTATTCCCGTTGCCATGCATCCTAAG
CACAGATGAGACCAAGCGTCGTGCGCACGTCAAAGTATTGGGACATATTG
TCAAGGCGCGACGTTTCGTTGGAACTACAATACTTCGAAGGATATGGCTG
GGTTGCTCCAATTGATCGAAATATACCCAGTTGTCTATACACATACACAT
AGACAGTCACCCAAAAGAGCAGCATGGAAGGGCCCCCGCATTAATAAACA
GGCGGACACATATCTACCCCCCGCGATCAATTGCGGCGCTGCCGCGAGGA
GCATACGGGGCCGAGAATCATCATTTACAAACGCTCGCGAAACGCGCTGT
TTTTGTAGTTTCACCGATCGTCCGCCACGGCACATGCCCCACGAAATTCG
CAGGCATGGGCCCCCCCGGCATCGCCCATGGCGTACTCAGGGGAACGCCA
GGCAGCGTCGCCGATGGCTCAGAACCTTGCCAGACAACGGGGGTCGAAAG
CACCGCGCCGTCGGCATTCCCAGGCACCACACCGAAGAACCGGGAGCAGC
AGCATCGCCAGGGGGGGCGGCGGCGAAGCCACCGTCGTACAAACCGTAGT
GTCTTCGGGAGGGGGAGCGAAAGCGAGTGGCGGTCGTCGAGACGCTGAAG
GCACGGGTGTGGCCACGAGTTATGGCAGCGGCAGCAGCAGCGGCGGCGGC
GTCGAGAGCAACATACATCCTCGATCCCAGGAGCGTCCTGTGCGGGACGC
AAAAGGAGGGCAGCACGAGGCAACTACTAGAGCAAGCAGTGGCAACGGGG
CGAGCAGCGGTAGTGGCAGAGGTTCAAGGGGGGTCGCCGGGTGCGGTGAA
GCCTGGGGGGCAACATCGGTGACGACAGCTCGGAGTCCCTCTGAACGGGC
ACGCAGCGGCGGAGCAAGCACGGGGCGAGGGGGTAAGAGCTCGAACAGTC
CAGAGGCCTGGGCATGGGCCGGAGGGAGCGGGGGGGCGGCTAGAGGGCGG
GCAATGCTCAGCGCGTACGGCCTCCAATCCGACAAACACAACCCAACCTG
CCCGCGAGGTACCCCTAGCGACAACGGTGTAGCGAGGCACGCACGCTGGC
AACGCGATCAGAACGGAGGATGTTCGCGGAAGTTGGAGGGCGGTGGCAGC
AGCAGTGGAAACGAAGGTGGCCGAAGAGTCGGAGGCGACGAAGAAAATGG
CTGCACTGGAACGGCCGAATCACACTGCGCCGGTAGCGATGTTGATCTTG
CTGGCGATGATACGTCGGGCCAAGCTTCGGCCGCTCACGTTCACAAGGTT
TGTCGCGGTAAGGGTCATAAGCAGCGCCAATCTGTTGCTCCTCACCGAAG
ATCGACCGCGACTAGCGATAGATGCTCCTCCGGAGATTGCTCGTCTAGCT
ACGGGGATGCTTCAGCGGAATGCTCCATCGCCGGTGATATTTCTCCCGCA
CAGAAAGACCATCGAAATGCACCGGATGGATTCTTGGGCAACATGATGGC
CACTGCCGCAAGCTTTCGAGAAAGTGCCAGACCAGCAGGAAAGAAAAGTG
TCAATAATCACGCGCAGCCAGAGGTGTTTCTCGTGCCTCCTCGCGGTTCA
ACCGCGTCACCGCACCAATCCAATTGCTACGCTGCAGGCTCGGGACCGCC
GGCCGTGGCAGCAACCTCCGGACACGTGGAAATCCTAACCATGGACGGCA
GGGGCGGGAGCGCGGCACCCTTGCACCGACCGCAACTAAGCCTCAAGGCA
TCTTCTTCCGCTTCATACGCACCCGTCCTGCCCGGCCTTAGCACGGGGAC
AGGGGCAGGAGCTGGGGTGATCGATACCGCCGAGGTCGGTAGTGGAGACG
GTGTCGGAGAGGGTGGCGGCAGCGGCGTGGCGGAGGATAGTCACAGCACG
CCGCCGGTCTCGCGACAGCGGTCTCACTCCCACCACTCCCCCTGGCAGGC
CAGGAAGCAGTCTAGGGGCCTCCCGCGGAGCAGAGGCGGGGCGGGAGTCG
GCCGCCACCACCACCACTCAGAGGAGCGCCGGCTTTTGGAGAAAAGGCCG
TCGTCAGGGTCTACGGCGGGGAGGCTAGGCTCGTGCTTTTCTTCAGAATC
GACGGAAAGGGCCACGCCGTTCTTCTCCTCTCCTAATTCTGCTTCGGCGG
CGGCCGTTGCGGGTGCTGCAAGTGAGCCGAAACACGACTGCAGTAGCACC
GCCAGCGCGGTGGTGGCGCGGAGGCAGCAGCAAGGAGGGGGCGAGCGTAA
CCCGTTCGATCGGCTTCTCCATCCACGCCATCATGACGGCGAGAAGGCCT
CGTCTTGTCCTTCCGCTGCAGGCGGCGGCGCGGTTGCGGCCGCACCTCAC
TCCGAGCTGATCGACCGCTTCAAGATGGCTACCAGACCCACGTCGCGCCG
GGGCACCCGCAAGCAGGGAGGCGGAGAGGGCGAATGCGCCCCCGAGCCCG
CGTTCTGCCTCTTCAGTCGGGGGGGTGTTGTCGGCGGTAGCGCTGCCGGG
GGTGGGAGAGGGCGGGGCGCCGAGGAGGAGGAGCGGCGGAGAAGTAGCAG
GGAGTATGGGACGCATTGA

Coding sequence (CDS) from alignment at chr_27:5059307..5062425-

>Ec-27_005570.1 ID=Ec-27_005570.1|Name=Ec-27_005570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2253bp|location=Sequence derived from alignment at chr_27:5059307..5062425- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTAGCCGTTGCTTCTTCCATGGATGCAGGCAGGTCGTGGGGACTCCT
GTCTGCTGGCAGCTCGATGATACATACTACTACCAGGGCATGGGCCCCCC
CGGCATCGCCCATGGCGTACTCAGGGGAACGCCAGGCAGCGTCGCCGATG
GCTCAGAACCTTGCCAGACAACGGGGGTCGAAAGCACCGCGCCGTCGGCA
TTCCCAGGCACCACACCGAAGAACCGGGAGCAGCAGCATCGCCAGGGGGG
GCGGCGGCGAAGCCACCGTCGTACAAACCGTAGTGTCTTCGGGAGGGGGA
GCGAAAGCGAGTGGCGGTCGTCGAGACGCTGAAGGCACGGGTGTGGCCAC
GAGTTATGGCAGCGGCAGCAGCAGCGGCGGCGGCGTCGAGAGCAACATAC
ATCCTCGATCCCAGGAGCGTCCTGTGCGGGACGCAAAAGGAGGGCAGCAC
GAGGCAACTACTAGAGCAAGCAGTGGCAACGGGGCGAGCAGCGGTAGTGG
CAGAGGTTCAAGGGGGGTCGCCGGGTGCGGTGAAGCCTGGGGGGCAACAT
CGGTGACGACAGCTCGGAGTCCCTCTGAACGGGCACGCAGCGGCGGAGCA
AGCACGGGGCGAGGGGGTAAGAGCTCGAACAGTCCAGAGGCCTGGGCATG
GGCCGGAGGGAGCGGGGGGGCGGCTAGAGGGCGGGCAATGCTCAGCGCGT
ACGGCCTCCAATCCGACAAACACAACCCAACCTGCCCGCGAGGTACCCCT
AGCGACAACGGTGTAGCGAGGCACGCACGCTGGCAACGCGATCAGAACGG
AGGATGTTCGCGGAAGTTGGAGGGCGGTGGCAGCAGCAGTGGAAACGAAG
GTGGCCGAAGAGTCGGAGGCGACGAAGAAAATGGCTGCACTGGAACGGCC
GAATCACACTGCGCCGGTAGCGATGTTGATCTTGCTGGCGATGATACGTC
GGGCCAAGCTTCGGCCGCTCACGTTCACAAGGTTTGTCGCGGTAAGGGTC
ATAAGCAGCGCCAATCTGTTGCTCCTCACCGAAGATCGACCGCGACTAGC
GATAGATGCTCCTCCGGAGATTGCTCGTCTAGCTACGGGGATGCTTCAGC
GGAATGCTCCATCGCCGGTGATATTTCTCCCGCACAGAAAGACCATCGAA
ATGCACCGGATGGATTCTTGGGCAACATGATGGCCACTGCCGCAAGCTTT
CGAGAAAGTGCCAGACCAGCAGGAAAGAAAAGTGTCAATAATCACGCGCA
GCCAGAGGTGTTTCTCGTGCCTCCTCGCGGTTCAACCGCGTCACCGCACC
AATCCAATTGCTACGCTGCAGGCTCGGGACCGCCGGCCGTGGCAGCAACC
TCCGGACACGTGGAAATCCTAACCATGGACGGCAGGGGCGGGAGCGCGGC
ACCCTTGCACCGACCGCAACTAAGCCTCAAGGCATCTTCTTCCGCTTCAT
ACGCACCCGTCCTGCCCGGCCTTAGCACGGGGACAGGGGCAGGAGCTGGG
GTGATCGATACCGCCGAGGTCGGTAGTGGAGACGGTGTCGGAGAGGGTGG
CGGCAGCGGCGTGGCGGAGGATAGTCACAGCACGCCGCCGGTCTCGCGAC
AGCGGTCTCACTCCCACCACTCCCCCTGGCAGGCCAGGAAGCAGTCTAGG
GGCCTCCCGCGGAGCAGAGGCGGGGCGGGAGTCGGCCGCCACCACCACCA
CTCAGAGGAGCGCCGGCTTTTGGAGAAAAGGCCGTCGTCAGGGTCTACGG
CGGGGAGGCTAGGCTCGTGCTTTTCTTCAGAATCGACGGAAAGGGCCACG
CCGTTCTTCTCCTCTCCTAATTCTGCTTCGGCGGCGGCCGTTGCGGGTGC
TGCAAGTGAGCCGAAACACGACTGCAGTAGCACCGCCAGCGCGGTGGTGG
CGCGGAGGCAGCAGCAAGGAGGGGGCGAGCGTAACCCGTTCGATCGGCTT
CTCCATCCACGCCATCATGACGGCGAGAAGGCCTCGTCTTGTCCTTCCGC
TGCAGGCGGCGGCGCGGTTGCGGCCGCACCTCACTCCGAGCTGATCGACC
GCTTCAAGATGGCTACCAGACCCACGTCGCGCCGGGGCACCCGCAAGCAG
GGAGGCGGAGAGGGCGAATGCGCCCCCGAGCCCGCGTTCTGCCTCTTCAG
TCGGGGGGGTGTTGTCGGCGGTAGCGCTGCCGGGGGTGGGAGAGGGCGGG
GCGCCGAGGAGGAGGAGCGGCGGAGAAGTAGCAGGGAGTATGGGACGCAT
TGA

Ec-27_005570.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

ZOOM

x 1

POSITION

0