Ec-00_001570.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001570.1 ID=Ec-00_001570.1|Name=Ec-00_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=481bp
MACEVDMEKHSSSQDYQPKDVGHSEVSKQNSNGFAWWRPRSILRASLADV
SLSTTNTSVVSNSNSNSNSSPPLPHQGGGEGEGEGESSPSSLFDVAAAAQ
QQQFETQLKPKIQHHSNWTRGSRDGTEAPSPDEDDATNNHHNDADSATAA
SPSLLPAYNNDSARRRRPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAA
AAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQEQQDEQQRRRLDEQRRTPS
KPPRTNHHAGAVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDE
TAAEEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQ
GGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDA
GDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHE
VVFVGRPMWELVSPVLDLSAKAGGGAGASG*
back to top

spliced messenger RNA

>Ec-00_001570.1 ID=Ec-00_001570.1|Name=Ec-00_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1842bp|location=Sequence derived from alignment at chr_00:1791776..1796298- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTATGTTAACTTATTCTTATTCGCAGACCCCCTTCTCAAAGGTCAAA
TTCCCAGTGCAGCAACACGCAACTTTTGGACAAGAACAGCAGGATCCCAC
TCCCCCCCGGCGCTTTGGCACTACTGCAGCGACACCTTCGAGCTGTGGGA
TGGTCGCGTACATGAACCCTTCCGCCGCACGTTGATACGTTGATATCTTG
TACTTCGGGGGGATTCGATTGTCAACGTCCGCGGTGTGCTGGTACACTAC
AGCTGGTGCGTGCGTGACAGTTGAGACTTTTTCTTACGCAGAGGAGCATA
GAGAGAGAGAGAGCTCTCCTGTTTGATACCAACGCGTGCAGCACGGCTGA
GATCCACACCCCGCCAGCGGCGGAGAGATATACCCGGATCAGACGTGCCA
TGGCATGTGAGGTAGACATGGAAAAGCACAGCAGCAGTCAAGACTATCAA
CCGAAGGACGTGGGTCATAGCGAAGTTTCAAAACAAAACAGCAACGGCTT
CGCCTGGTGGAGACCTCGTTCTATCCTCCGAGCATCCCTTGCCGATGTCT
CCCTCAGCACCACCAACACCAGCGTCGTCAGCAACAGCAACAGCAACAGC
AACAGTTCCCCGCCGCTACCGCACCAAGGCGGCGGAGAGGGAGAGGGAGA
GGGAGAGTCGTCTCCCTCCTCGCTGTTCGACGTAGCAGCGGCAGCACAAC
AGCAGCAGTTCGAGACACAGCTCAAGCCCAAGATCCAGCACCACAGCAAC
TGGACCAGAGGCAGCAGGGACGGCACCGAGGCACCGTCCCCCGACGAGGA
CGATGCCACCAACAACCACCACAATGACGCCGACTCTGCTACTGCTGCAT
CGCCGTCGCTCCTGCCGGCGTACAACAACGACTCGGCCCGGCGGCGACGA
CCAGAGCAAGGCCTCCTCGGATCCTCGTCCGGAAAGCTCAAGTCCCTCAA
GCTCGCCCCGATAGGCTCGGAGCAACTCGCAAAGCACACAGCAGCAGCAG
CAGCAGTGGATTCGGATCGCCCTGGGACTCCTGTCAGGGGTGGCGGTATT
GGCAGCACCTGGTGCGTGGGCCCTCTGCAGGTTCGTCGGCAGGAGCAGCA
GGACGAGCAGCAGCGGCGGCGGTTGGACGAGCAACGGCGCACGCCTTCCA
AGCCGCCGCGGACTAACCACCACGCCGGCGCCGTGGGCGCCCGCTTCGCC
GTGGCTAGCGAGGGGGGCATGGGTACGCTCGGCGAGAAGGCTACGGCGCA
AGCGGGGGTGGGAGAGGGCAGCTGGAGGGAGGAGGGCATGGACGACGAGA
CCGCGGCAGAGGAGGGGGGCCAGGTGGCGGCGGAGCGGATGAGAGCCTTG
ACCTCCGGCCAAGGGGAATTTCTGGCGAGAAGAGGCTTCGCCGCCGGTCT
GGTGTCACATTTCCTGGAGGAGACGAACTGCGAGTTCAGGGTTCTCCAGG
GGGGCGCGTCCTGCGGGATGAACGCGCAGCAACTGGAAGATGCCGCCGCC
CGCCTGGAAGAAGTCTTCGTGCCTGCCGTGAAGCGGCTGAGGGCACGGTC
TTCGGTGGACGTGGTGCTTGACTCCCTCTTCCAGGGTGCCGACGATGCCG
GAGACTTCGTCGTCCGATTCGAGGTTACCCTCACCAGGTGCCACCCGGAA
GACATCGACTCGAGCCCCGCTCCCGCCCTTCGAGAGTGCGCATCAGCTAT
CAAAGAGGCCGTCAGGGACGAGGGGGTAAACGACAAGGACACGCACGAGG
TAGTGTTCGTGGGCAGACCCATGTGGGAACTGGTGTCACCGGTCTTGGAC
TTGTCGGCCAAGGCCGGGGGGGGTGCTGGTGCTTCTGGTTGA
back to top

protein sequence of Ec-00_001570.1

>Ec-00_001570.1 ID=Ec-00_001570.1|Name=Ec-00_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=481bp
MACEVDMEKHSSSQDYQPKDVGHSEVSKQNSNGFAWWRPRSILRASLADV
SLSTTNTSVVSNSNSNSNSSPPLPHQGGGEGEGEGESSPSSLFDVAAAAQ
QQQFETQLKPKIQHHSNWTRGSRDGTEAPSPDEDDATNNHHNDADSATAA
SPSLLPAYNNDSARRRRPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAA
AAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQEQQDEQQRRRLDEQRRTPS
KPPRTNHHAGAVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDE
TAAEEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQ
GGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDA
GDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHE
VVFVGRPMWELVSPVLDLSAKAGGGAGASG*
back to top

mRNA from alignment at chr_00:1791776..1796298-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001570.1 ID=Ec-00_001570.1|Name=Ec-00_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4523bp|location=Sequence derived from alignment at chr_00:1791776..1796298- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGTGTATGTTAACTTATTCTTATTCGCAGACCCCCTTCTCAAAGGTCAAA TTCCCAGTGCAGCAACACGCAACTTTTGGACAAGAACAGCAGGATCCCAC TCCCCCCCGGCGCTTTGGCACTACTGCAGCGACACCTTCGAGCTGTGGGA TGGTCGCGTACATGAACCCTTCCGCCGCACGTTGATACGTTGATATCTTG TACTTCGGGGGGATTCGATTGTCAACGTCCGCGGTGTGCTGGTACACTAC AGCTGGTGCGTGCGTGACAGTTGAGACTTTTTCTTACGCAGAGGAGCATA GAGAGAGAGAGAGCTCTCCTGTTTGATACCAACGCGTGCAGCACGGCTGA GATCCACACCCCGCCAGCGGCGGAGAGATATACCCGGATCAGACGTGCCA TGGCATGTGAGGTAGACATGGAAAAGCACAGCAGCAGTCAAGACTATCAA CCGAAGGACGTGGGTCATAGCGAAGTTTCAAAACAAAACAGCAACGGCTT CGCCTGGTGGAGACCTCGTTCTATCCTCCGAGCATCCCTTGCCGATGTCT CCCTCAGCACCACCAACACCAGCGTCGTCAGCAACAGCAACAGCAACAGC AACAGTTCCCCGCCGCTACCGCACCAAGGCGGCGGAGAGGGAGAGGGAGA GGGAGAGTCGTCTCCCTCCTCGCTGTTCGACGTAGCAGCGGCAGCACAAC AGCAGCAGTTCGAGACACAGCTCAAGCCCAAGATCCAGCACCACAGCAAC TGGACCAGAGGCAGCAGGGACGGCACCGAGGCACCGTCCCCCGACGAGGA CGATGCCACCAACAACCACCACAATGACGCCGACTCTGCTACTGCTGCAT CGCCGTCGCTCCTGCCGGCGTACAACAACGACTCGGCCCGGCGGCGACGA CCAGAGCAAGGCCTCCTCGGATCCTCGTCCGGAAAGCTCAAGTCCCTCAA GCTCGCCCCGATAGGCTCGGAGCAACTCGCAAAGCACACAGCAGCAGCAG CAGCAGTGGATTCGGATCGCCCTGGGACTCCTGTCAGGGGTGGCGGTATT GGCAGCACCTGGTGCGTGGGCCCTCTGCAGGTTCGTCGGCAGGAGCAGCA GGACGAGCAGCAGCGGCGGCGGTTGGACGAGCAACGGCGCACGCCTTCCA AGCCGCCGCGGACTAACCACCACGCCGGCGCCGTGGGCGCCCGCTTCGCC GTGGCTAGCGAGGGGGGCATGGGTACGCTCGGCGAGAAGGCTACGGCGCA AGCGGGGGTGGGAGAGGGCAGCTGGAGGGAGGAGGGCATGGACGACGAGA CCGCGGCAGAGGTTAGCACCACCAGCGTCGTCTACGATGTCCTTGCGGTG GATCGGGGGTGCGGGTACTGCGACACCTCCGTGGTGCCGTTCCCCGTGGA GGAGGGGGGCCAGGTGGCGGCGGAGCGGATGAGAGCCTTGACCTCCGGCC AAGGGGAATTTCTGGCGAGAAGGTGAGTCGGCGGGTGCGTACGTGCTCAT GTTTGCGTGATTGTGGGTTGAAATATGGAATATGGAACGTACATAGAGAC AACAACCATCGCCACCTACCCGGGGGTCAAGCCCATATTGACGGTATGTG CTTCTTCGTTCGCGCGTGGCATGTTGTATGTTGTGCTGTGCCCCCCCCCC CCCCCCCCCAAAACCCCCCCCTTTTAAAAAAAAAAAAAATCTATCCCCCC GGGGCCCGGGGGGAAAACCCTGAATTTCCCCAACAAAAAATCTCTACCTA ACGGCCCCTGGGGGCTGGGGGTTTTTTTAAAAAAAAAGGTTTTTTTTGGG GGGGAATGGAAAAATGTGTCGGAAGGGCCAAGTATTGGGTCCAATTCAAA CCGGAAAGAAAATTGGGTCGGTCGTCAAGGGGCAAAAGGCCCCTCCCCCC CAAAGCCCGCGTGGGGGTTTTGGTGCGGCAAAATTTTTAAAATGTTGTCT CTTCCCAAAAAAACCCCTTGAACCCCCAATTTTAACAACAAAAACTTTTT TTTAAAATGGAAAAATAAAAATCAATTCCTAACCCAAAAAAAAAAACCGG GGCCACCTTTTGGTTAAATCTGTGGGGCTGTTTAAAACCGGCCCGCAAAA AACAATAAAAAAAACTGAAAAACCCCCCGTGCCCCGGGTCCTTTGGCGGT TTCTCTGAATGCCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNAACCCCTCCCCCCCTCCCCGGGGGTCAACCCCA TTTTGGGGGTTTGGGTTTTTTTTTTCGCGGGGGGCATTTTTTTTTTTTTG TTGGCCCCCCCCCCCCCCCCCCCTACACGCGCACCCTTTGAATATAACAT ATAGTCTATCCGCCGTGGGCCAGGTGGGAAATCGCTGAGTTTCGCTACAT ATATATCTCTACGTAGCGGCCCTTGGTGTCTGGGTGTTTTTTTAATAGTA ATGGTTTTTCTTGGGGTGTACTGTAGATATGTGTCGGATGGTCGATGTAT TGCGTCGATGTCACACGGCAAGGAAACTTGGGTCGGTCGTCATGGCGCAA AGGCGCGCTCCTCCTCGATGCCTGCGTGCGGGTTTTGGTGCGGCGAAGTT TTCATATTGTTGTCTCTTCTCAACAACACCGCTTGATCCTCGATTTTTAT CAGCAGTAGCTTTTTTTCAAAGTGTAGACGTACACATCAGTTCGTATCGC AGAGAAGAGAGCCGGGGCCACCTTTTGGTTAATTCTGTGGTGCTGTTCAT ACCGTGCCTGCAAGAACGATGACAACGATCTGACGATCCGCCTGTGCTCG TGTTCGTTTGGCTGTTTCTCTGACTGCCCCCTATCTGTCGCCCCACCTAC TGGCTGTACCTTGGTGTGTGTTTTACATGAGCAGAGGCTTCGCCGCCGGT CTGGTGTCACATTTCCTGGAGGAGACGAACTGCGAGTTCAGGGTTCTCCA GGTGCGCAGGCGGTTATCTCTGTAATATGTTTTGCCATGCTGTACATTGA TGGATCCCTTAACCTTCCCGCATATGATACGTTCCGGTGGGCAATAACGT ACCATCTTGATAGACGAACCGTCTTGATTGACGAACCGTGGAAGTCATTC TGGGTGTCGCGGCAGTGACGCCGGCGCATTATTGACGCTTAGCTTTATCC TATGGGTTTTTTCTTTTGATGACGCCATTCCTGACGTCCTGCTGTTTCGT TTTGTTTTTCACTTTCGCTTGCGCTCTGTGGCCATGCAACGATCAACGCA ACACCATAACCCCATGATCATAAAAAAACTGGCGGGCAAGTGAGTGGAAG TCTTGTTTCGAAAGCGTGGCAATCTCACGATGTTTCAGCACACCCAAGAC CTCGTGCCCACTTCCTCTTCCGCGCAGTTGCCTCTTACGACGTCCTCAAG CTCGACATGCCTTCCCTTCTCCCCCGTGTTTCACTTGGCGCGCCTTGGCA CCTCCGCAGGGGGGCGCGTCCTGCGGGATGAACGCGCAGCAACTGGAAGA TGCCGCCGCCCGCCTGGAAGAAGTCTTCGTGCCTGCCGTGAAGCGGCTGA GGGCACGGTCTTCGGTGGACGTGGTGCTTGACTCCCTCTTCCAGGGTGCC GACGATGCCGGAGACTTCGTCGTCCGATTCGAGGTTACCCTCACCAGGCG AGTGTCGTGCGGCGCGGTGTGGTGATTCAAGCACCGGTCTAAGGAAGAAA GTTGCGCGTGCCGGTTAATTTGGCCAAACTTATTCGCCGAATATCACTCC CCTCTCTCGAAGCAATGGGGTGGCACCCCGGATACTTCGTACTCGAAAGA AAAAAGCTGAAAAAGCGTCGCACTTCAAAAGCCGAATTGTCGTGTTTTTT CTGATCTCCAGCGGTGGTTCTGGGAGCCGCACGTGATGTTCTCCACCACT CGCTTTTCTAACGTGGGCACTTCTTGTATTCCCACACGTACACTACACAC GGTGTGCACGACGTCGAGCTGATCTGCTGTAGCACTGGCTCCCTGACGCC AAGGTATCAACTACGTGGGCCAGAAATACCTAGAAGCCTAGAAGTAGATC ACAGGCTTCGTTCACCCGCCATCCGTAGCTCGCGCACCTTCCTTAGCTGT ACTGTAGCACTCCCACCCACTCCACGCCTTCACCAACAATTGACAACGAA ACCGGTATCGATAACTCATGACGATAACCAGGACAGCACTGCTTGTTTAA TTACTACTGGGTATTGCTGTGTGCCTGACACGACTGAATGTCCATCAATG GCAACGTTGACGATGCAGGTGCCACCCGGAAGACATCGACTCGAGCCCCG CTCCCGCCCTTCGAGAGTGCGCATCAGCTATCAAAGAGGCCGTCAGGGAC GAGGGGGTAAACGACAAGGACACGCACGAGGTAGTGTTCGTGGGCAGACC CATGTGGGAACTGGTGTCACCGGTCTTGGACTTGTCGGCCAAGGCCGGGG GGGGTGCTGGTGCTTCTGGTTGA
back to top

Coding sequence (CDS) from alignment at chr_00:1791776..1796298-

>Ec-00_001570.1 ID=Ec-00_001570.1|Name=Ec-00_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1443bp|location=Sequence derived from alignment at chr_00:1791776..1796298- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCATGTGAGGTAGACATGGAAAAGCACAGCAGCAGTCAAGACTATCA
ACCGAAGGACGTGGGTCATAGCGAAGTTTCAAAACAAAACAGCAACGGCT
TCGCCTGGTGGAGACCTCGTTCTATCCTCCGAGCATCCCTTGCCGATGTC
TCCCTCAGCACCACCAACACCAGCGTCGTCAGCAACAGCAACAGCAACAG
CAACAGTTCCCCGCCGCTACCGCACCAAGGCGGCGGAGAGGGAGAGGGAG
AGGGAGAGTCGTCTCCCTCCTCGCTGTTCGACGTAGCAGCGGCAGCACAA
CAGCAGCAGTTCGAGACACAGCTCAAGCCCAAGATCCAGCACCACAGCAA
CTGGACCAGAGGCAGCAGGGACGGCACCGAGGCACCGTCCCCCGACGAGG
ACGATGCCACCAACAACCACCACAATGACGCCGACTCTGCTACTGCTGCA
TCGCCGTCGCTCCTGCCGGCGTACAACAACGACTCGGCCCGGCGGCGACG
ACCAGAGCAAGGCCTCCTCGGATCCTCGTCCGGAAAGCTCAAGTCCCTCA
AGCTCGCCCCGATAGGCTCGGAGCAACTCGCAAAGCACACAGCAGCAGCA
GCAGCAGTGGATTCGGATCGCCCTGGGACTCCTGTCAGGGGTGGCGGTAT
TGGCAGCACCTGGTGCGTGGGCCCTCTGCAGGTTCGTCGGCAGGAGCAGC
AGGACGAGCAGCAGCGGCGGCGGTTGGACGAGCAACGGCGCACGCCTTCC
AAGCCGCCGCGGACTAACCACCACGCCGGCGCCGTGGGCGCCCGCTTCGC
CGTGGCTAGCGAGGGGGGCATGGGTACGCTCGGCGAGAAGGCTACGGCGC
AAGCGGGGGTGGGAGAGGGCAGCTGGAGGGAGGAGGGCATGGACGACGAG
ACCGCGGCAGAGGAGGGGGGCCAGGTGGCGGCGGAGCGGATGAGAGCCTT
GACCTCCGGCCAAGGGGAATTTCTGGCGAGAAGAGGCTTCGCCGCCGGTC
TGGTGTCACATTTCCTGGAGGAGACGAACTGCGAGTTCAGGGTTCTCCAG
GGGGGCGCGTCCTGCGGGATGAACGCGCAGCAACTGGAAGATGCCGCCGC
CCGCCTGGAAGAAGTCTTCGTGCCTGCCGTGAAGCGGCTGAGGGCACGGT
CTTCGGTGGACGTGGTGCTTGACTCCCTCTTCCAGGGTGCCGACGATGCC
GGAGACTTCGTCGTCCGATTCGAGGTTACCCTCACCAGGTGCCACCCGGA
AGACATCGACTCGAGCCCCGCTCCCGCCCTTCGAGAGTGCGCATCAGCTA
TCAAAGAGGCCGTCAGGGACGAGGGGGTAAACGACAAGGACACGCACGAG
GTAGTGTTCGTGGGCAGACCCATGTGGGAACTGGTGTCACCGGTCTTGGA
CTTGTCGGCCAAGGCCGGGGGGGGTGCTGGTGCTTCTGGTTGA
back to top