Ec-00_001480.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_001480.1
Unique Name	Ec-00_001480.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	744

Homology

[Close]

BLAST of Ec-00_001480.1 vs. uniprot
Match: D8LEA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA2_ECTSI)

HSP 1 Score: 625 bits (1611), Expect = 1.690e-215
Identity = 391/499 (78.36%), Postives = 391/499 (78.36%), Query Frame = 2

Query: 1076 VRAKIIAVGKAEMILNEVCLAIARRVGRAEGTQMSDNKGAILMEVHRNPAEFASQIKKNIVAQFSKWDIDRVDLEASAELAREKATDAIQVHEAERANLSARTELLEEKIRQMEVDGQRVVAEAESAAKDSHEEALAASAAKSKLTQELEAAAARNEELCETAKDKEQEFQAQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQVHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQVLKTPDALRSVAEERVAGAAPTKRPDNSKRAETSSNHGWMTTQNGGGRXXXXXXXXXXXXXXXXXXXXHSWAQQGSGEAGVGSTARVRRTIKMLEDCD 2572
            VRAKIIAVGKAEMILNEV                           HRNPAEFASQIKKNIVAQFSKWDIDRVDLEASAELAREKATDAIQ                                                                                 AQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQVHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQVLKTPDALRSVAEERVAGAAPTKRPDNSKRAETSSNHGWMTTQNGGGRXXXXXXXXXXXXXXXXXXXXHSWAQQGSGEAGVGSTARVRRTIKMLEDCD
Sbjct:   26 VRAKIIAVGKAEMILNEV---------------------------HRNPAEFASQIKKNIVAQFSKWDIDRVDLEASAELAREKATDAIQ---------------------------------------------------------------------------------AQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQVHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQVLKTPDALRSVAEERVAGAAPTKRPDNSKRAETSSNHGWMTTQNGGGRXXXXXXXXXXXXXXXXXXXXHSWAQQGSGEAGVGSTARVRRTIKMLEDCD 416

[Close]

BLAST of Ec-00_001480.1 vs. uniprot
Match: A0A6H5KGB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB1_9PHAE)

HSP 1 Score: 624 bits (1609), Expect = 2.690e-214
Identity = 344/390 (88.21%), Postives = 358/390 (91.79%), Query Frame = 2

Query: 1466 SHEEALAASAAKSKLTQELEAAAARNEELCETAKDKEQEFQAQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQVHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQVLKTPDALRSVAEERVAGAAPTKRPDNSKRAETSSNHGWMTTQNGGGRXXXXXXXXXXXXXXXXXXXXHSWAQQGSGEAGVGSTARVRRTIKMLEDCDWSIEKQRERETSATNNVSALH 2635
            SHEEA+AASAAKS LTQEL+A AARN+ELC+TAKDKE+EFQAQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQ HKYRELAGARGVQAAQ+K EISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASM QLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQ+LKTPDALRSVAEERVA AAPTKRPDNSKR+ETSSNHGW+++QNGG R                     SWA+ GSGEA VGSTARVRRTIKMLE+CDWSIEKQRERET+A NNVS LH
Sbjct:   13 SHEEAIAASAAKSILTQELQATAARNKELCQTAKDKEKEFQAQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQAHKYRELAGARGVQAAQLKAEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMVQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQMLKTPDALRSVAEERVAAAAPTKRPDNSKRSETSSNHGWISSQNGGSRGIKNHASPDRENEAAPRLANQSWARHGSGEARVGSTARVRRTIKMLENCDWSIEKQRERETNANNNVSVLH 402

The following BLAST results are available for this feature:

BLAST of Ec-00_001480.1 vs. uniprot

BLAST of Ec-00_001480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEA2_ECTSI	1.690e-215	78.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KGB1_9PHAE	2.690e-214	88.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:1696420..1703867 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2654
Hectar predicted targeting category	other localisation
Gene id	Ec-00_001480.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_001480	Ec-00_001480	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 1696420..1703867 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001480.1.13	Ec-00_001480.1.13	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1696420..1696498 -
Ec-00_001480.1.12	Ec-00_001480.1.12	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1696857..1697126 -
Ec-00_001480.1.11	Ec-00_001480.1.11	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1697627..1697754 -
Ec-00_001480.1.10	Ec-00_001480.1.10	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1698094..1698244 -
Ec-00_001480.1.9	Ec-00_001480.1.9	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1698574..1698677 -
Ec-00_001480.1.8	Ec-00_001480.1.8	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1698998..1699126 -
Ec-00_001480.1.7	Ec-00_001480.1.7	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1699650..1699788 -
Ec-00_001480.1.6	Ec-00_001480.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1700262..1700326 -
Ec-00_001480.1.5	Ec-00_001480.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1700767..1700887 -
Ec-00_001480.1.4	Ec-00_001480.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1701307..1701428 -
Ec-00_001480.1.3	Ec-00_001480.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1702005..1702142 -
Ec-00_001480.1.2	Ec-00_001480.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1702471..1702649 -
Ec-00_001480.1.1	Ec-00_001480.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1702839..1703867 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001480.1	CDS:Ec-00_001480.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 1696420..1696498 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001480	5UTR:Ec-00_001480.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 1703446..1703867 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001480.1	Ec-00_001480.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 1696420..1703445 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:1696420..1703867-
coding sequence from alignment at chr_00:1696420..1703867-

mRNA sequence

>Ec-00_001480.1 ID=Ec-00_001480.1|Name=Ec-00_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=744bp
MDEIEHIENSDEGLRDPSIADAPLKKGKKRTRHKATRGSKRRPRSANLLT
SAANSSSSNRPGVDAKLGDENTERQRQQREGSRMRGDGQRISRNVNSASA
PQLLMRNTTPGIAGDRKRADENTTGSVHEEGGGRRLFGRRRTPSAVNNVD
GVDDLDVEEEGELEKAQQSIKDTTRSLQELGLQKQEIELRHRQMENRCTQ
LEVELSSKQSELKSYKAEVRAKIIAVGKAEMILNEVCLAIARRVGRAEGT
QMSDNKGAILMEVHRNPAEFASQIKKNIVAQFSKWDIDRVDLEASAELAR
EKATDAIQVHEAERANLSARTELLEEKIRQMEVDGQRVVAEAESAAKDSH
EEALAASAAKSKLTQELEAAAARNEELCETAKDKEQEFQAQLDRFMEYPK
AAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREK
ARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQ
VHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIAR
LARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERD
EFALCIKDLRARNSWLEKQVLKTPDALRSVAEERVAGAAPTKRPDNSKRA
ETSSNHGWMTTQNGGGRGIKNRAAPGRENEAAPRLENHSWAQQGSGEAGV
GSTARVRRTIKMLEDCDWSIEKQRERETSATNNVSALHGGGGGG

spliced messenger RNA

>Ec-00_001480.1 ID=Ec-00_001480.1|Name=Ec-00_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2654bp|location=Sequence derived from alignment at chr_00:1696420..1703867- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCACGACAAGAAAGCTCGTATCGGATATCGGAAGATTGAACGTGTGGAGC
ATTGGGATGATGGGGGATTCCATGCGAATCGACGACAGCAATAACACTAG
AACATGGTGGAAGCATTGACAGTCGAGCCGATTCGCACTTCCGCCAAGGA
ATGCGCATCAGGCTGAGTCAAACGAATGTGCAACAGATTCCGCCGCGCCT
ACAGCAGGGTTACGGTTCCGAACGAATCGTTTTTCCGCCGCGCATGCGTA
GATGTACAGCAGGTCGAGTTTCTCCGCACCGCGCTCTATTCTGGCAGCAT
CACTGGCATAGTACACACGTGCACGTCCAACAGAACCGCTGTACGTTCTC
CTCATGAATATGTGATCAAGAGAATTGACTTCGCAGCAACAGAGACGCGA
CGCCCCTCTCAGCTGGCAAAGGATGGATGAAATCGAACACATCGAAAACA
GCGATGAGGGCCTCCGCGATCCTTCCATTGCCGATGCACCTCTCAAGAAA
GGGAAGAAAAGAACTCGCCATAAGGCAACCAGAGGCAGCAAAAGACGGCC
GAGGTCAGCAAACTTGCTAACATCAGCGGCAAACAGCAGCAGCTCAAACC
GCCCTGGTGTAGACGCCAAACTTGGAGACGAAAACACCGAACGACAGCGA
CAGCAGAGGGAGGGGTCGAGAATGCGTGGCGATGGCCAAAGGATAAGCAG
GAACGTCAATTCCGCGTCAGCCCCACAGCTACTAATGAGGAATACCACCC
CTGGTATTGCTGGTGATAGAAAACGCGCAGATGAAAACACCACCGGTTCC
GTGCACGAGGAAGGAGGAGGTCGGCGTCTTTTTGGCCGGAGAAGAACCCC
CTCTGCGGTGAACAATGTCGACGGGGTTGATGACTTGGACGTTGAAGAAG
AGGGAGAGCTGGAGAAAGCACAACAAAGCATCAAGGATACTACTCGGTCG
TTGCAAGAGTTGGGGCTTCAGAAACAGGAAATAGAGTTGCGGCACCGACA
AATGGAGAACCGCTGCACGCAATTGGAAGTCGAGTTGAGCTCTAAGCAGA
GCGAGCTGAAGTCCTACAAGGCCGAGGTTCGTGCCAAGATCATCGCCGTC
GGCAAGGCGGAGATGATCCTCAACGAGGTCTGCCTCGCGATAGCCCGCAG
GGTGGGACGCGCGGAGGGGACTCAGATGTCGGACAACAAGGGCGCTATTC
TGATGGAGGTGCACAGAAATCCAGCGGAGTTCGCCTCGCAAATAAAGAAA
AATATTGTCGCCCAGTTTTCCAAGTGGGACATCGATCGCGTGGACTTAGA
GGCGTCGGCCGAACTTGCAAGGGAGAAGGCGACCGATGCTATCCAGGTGC
ACGAGGCCGAGCGCGCCAATCTCTCGGCACGCACGGAGCTTCTCGAAGAG
AAAATTCGCCAGATGGAGGTCGACGGCCAGCGAGTAGTGGCGGAAGCGGA
GAGCGCCGCCAAGGACAGTCACGAAGAAGCCCTAGCCGCGTCTGCAGCTA
AGAGTAAACTGACTCAAGAGCTCGAAGCAGCGGCAGCGCGAAACGAAGAG
CTTTGTGAGACCGCCAAGGACAAGGAACAGGAGTTCCAGGCCCAACTGGA
CCGTTTTATGGAGTATCCGAAAGCGGCCGAGAGGATGGCGGAGGAGTTAG
AGAGGTGCAAAAAGACTGCTCGGCGAGAAAAAAACTTGATGGTCCTGGAG
CGAAAGGAATTTCGTCGACAGCTGCACATGTTTCAGAAGTGGCAGACGGA
GAACAGCAACTTACGGGAGAAGGCCAGAGCCCAGGAGATGCAGGTCGTGG
CTCTACGGCGCCAGCTAGCGGTGACCGAATCGGGGTTGGCCGGGAGTGCT
TCAACGAGAAAGGCGGTGATAGGGGGAACAGTGGATCGCTTGCAACGAGC
AGAGACCGCGGCAAAGCACCAGGTTCACAAGTACCGAGAGTTGGCAGGAG
CGCGAGGGGTTCAAGCTGCGCAAATGAAGACGGAGATCTCTTCCCTCAAG
GCCACCATCAAAACCCTTCGACTCAAGCTCGAGCCACCCGCACACGACTC
CTACGAAACGGAGATAGCCAGACTCGCGAGGGTCAACCCCGAAGTGCTGG
ACATCCAGCAGAAGTCGGGGCTAAGCAAAGAGGACATGGAGGCCAGCATG
GCGCAGCTCAAGCTTCTACGGGAGAAGGAGGAGCAGAAGGATGCGCTAAT
TGCGCTCGCGCGGGAGCGAGACGAGTTCGCGTTGTGTATCAAGGACCTCA
GAGCCCGAAACTCTTGGCTCGAGAAACAAGTGCTAAAGACCCCGGACGCG
CTCCGGTCTGTGGCGGAGGAGCGTGTGGCAGGTGCGGCCCCTACCAAACG
ACCCGATAATTCCAAACGTGCGGAAACGTCGTCCAACCACGGCTGGATGA
CCACTCAGAACGGCGGAGGCCGAGGGATCAAGAATCGCGCAGCCCCCGGT
AGGGAGAACGAGGCCGCACCGAGGCTGGAGAACCATTCGTGGGCCCAGCA
GGGTTCCGGAGAGGCGGGGGTAGGGTCAACGGCAAGGGTCAGACGAACAA
TAAAAATGCTCGAAGATTGCGACTGGAGTATCGAGAAACAGCGTGAGCGA
GAGACCAGCGCCACCAACAATGTTAGTGCCCTACACGGTGGTGGCGGCGG
CGGC

protein sequence of Ec-00_001480.1

>Ec-00_001480.1 ID=Ec-00_001480.1|Name=Ec-00_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=744bp
MDEIEHIENSDEGLRDPSIADAPLKKGKKRTRHKATRGSKRRPRSANLLT
SAANSSSSNRPGVDAKLGDENTERQRQQREGSRMRGDGQRISRNVNSASA
PQLLMRNTTPGIAGDRKRADENTTGSVHEEGGGRRLFGRRRTPSAVNNVD
GVDDLDVEEEGELEKAQQSIKDTTRSLQELGLQKQEIELRHRQMENRCTQ
LEVELSSKQSELKSYKAEVRAKIIAVGKAEMILNEVCLAIARRVGRAEGT
QMSDNKGAILMEVHRNPAEFASQIKKNIVAQFSKWDIDRVDLEASAELAR
EKATDAIQVHEAERANLSARTELLEEKIRQMEVDGQRVVAEAESAAKDSH
EEALAASAAKSKLTQELEAAAARNEELCETAKDKEQEFQAQLDRFMEYPK
AAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREK
ARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQ
VHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIAR
LARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERD
EFALCIKDLRARNSWLEKQVLKTPDALRSVAEERVAGAAPTKRPDNSKRA
ETSSNHGWMTTQNGGGRGIKNRAAPGRENEAAPRLENHSWAQQGSGEAGV
GSTARVRRTIKMLEDCDWSIEKQRERETSATNNVSALHGGGGGG

mRNA from alignment at chr_00:1696420..1703867-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_001480.1 ID=Ec-00_001480.1|Name=Ec-00_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7448bp|location=Sequence derived from alignment at chr_00:1696420..1703867- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCACGACAAGAAAGCTCGTATCGGATATCGGAAGATTGAACGTGTGGAGC
ATTGGGATGATGGGGGATTCCATGCGAATCGACGACAGCAATAACACTAG
AACATGGTGGAAGCATTGACAGTCGAGCCGATTCGCACTTCCGCCAAGGA
ATGCGCATCAGGCTGAGTCAAACGAATGTGCAACAGATTCCGCCGCGCCT
ACAGCAGGGTTACGGTTCCGAACGAATCGTTTTTCCGCCGCGCATGCGTA
GATGTACAGCAGGTCGAGTTTCTCCGCACCGCGCTCTATTCTGGCAGCAT
CACTGGCATAGTACACACGTGCACGTCCAACAGAACCGCTGTACGTTCTC
CTCATGAATATGTGATCAAGAGAATTGACTTCGCAGCAACAGAGACGCGA
CGCCCCTCTCAGCTGGCAAAGGATGGATGAAATCGAACACATCGAAAACA
GCGATGAGGGCCTCCGCGATCCTTCCATTGCCGATGCACCTCTCAAGAAA
GGGAAGAAAAGAACTCGCCATAAGGCAACCAGAGGCAGCAAAAGACGGCC
GAGGTCAGCAAACTTGCTAACATCAGCGGCAAACAGCAGCAGCTCAAACC
GCCCTGGTGTAGACGCCAAACTTGGAGACGAAAACACCGAACGACAGCGA
CAGCAGAGGGAGGGGTCGAGAATGCGTGGCGATGGCCAAAGGATAAGCAG
GAACGTCAATTCCGCGTCAGCCCCACAGCTACTAATGAGGAATACCACCC
CTGGTATTGCTGGTGATAGAAAACGCGCAGATGAAAACACCACCGGTTCC
GTGCACGAGGAAGGAGGAGGTCGGCGTCTTTTTGGCCGGAGAAGAACCCC
CTCTGCGGTGAACAATGTCGACGGGGTTGATGACTTGGACGTTGAAGAAG
AGGGAGAGCTGGAGAAAGCACAACAAAGCATCAAGGATACTACTCGGTCG
TTGCAAGAGTTGGGGCTTCAGAAACAGGAAATAGAGTTGCGGCACCGACA
AATGGAGAACCGCTGCACGCAATTGGAAGGTGCGTGTGGTTTGATATTCG
GGCTACTTGACTGCCCCCACGGTACCGTTTTGCCTGCAGCACAGTGTGCT
TGCTTTCAAGGCCCTTGGGGTCTTCTCTTGTGAGGATGCCCACAGTCATT
TCTAGCCTACGTCTTTCTTCATGGTTGGCACTCCCGTGCATCCCTTATTC
CTGTCCGTTCTACAATAGTCGAGTTGAGCTCTAAGCAGAGCGAGCTGAAG
TCCTACAAGGCCGAGGTTCGTGCCAAGATCATCGCCGTCGGCAAGGCGGA
GATGATCCTCAACGAGGTCTGCCTCGCGATAGCCCGCAGGGTGGGACGCG
CGGAGGGGACTCAGATGTCGGACAACAAGGGCGCTATTCTGATGGAGGTT
TGCTGTACAACGATTAGCGTCCACCACGGTTCGACTGTGCAATACTCGAA
GAATAGTCTACACCCATGAGAGAGGCGGAACACCTGCGGTTGCAACTTAA
GGCAACAGAGGGGTCAAAACTGAGAGCCACGTTACGTATGTATGTATAGC
TCTCGTTCTCGCAGAACGTGTCTTTACCACCACCGCCACCACCAGTACAC
TACCACTGCCACTTTCCAAAGGCACCGACATCGTGTGCTTGTCTCACTCG
CTGACCACCGATGAGTTCAAACCGCAAACATACTTCTCGCGGTGCCCCAC
TCATCATTCTTCCACCCACCTAAAGGTGCACAGAAATCCAGCGGAGTTCG
CCTCGCAAATAAAGAAAAATATTGTCGCCCAGTTTTCCAAGTGGGACATC
GATCGCGTGGACTTAGAGGCGTCGGCCGAACTTGCAAGGGAGAAGGCGAC
CGATGCTATCCAGGTGATCCGAAACCTGAAGCAGAGTAGTCAATAGCAGC
ACCAGATTAAATTCTTTCGGATTCGGTCCGGGGCACGTACGAATATGGAT
TCCAGCACGTCAAACTACAAGTCCAGCGGTAGAACCAACCCGCGCGACAT
GATTATAGGTTGGGCTCATGGTGCCAAGTTTCCGCGCTCACAAGTAGACA
GTGAGGATGGGGGTTGGAATCCTGGTCACGACAGCCAACCAAAATACAAG
ATATCAGTATCACGCTCAGAAACGCTCATATTGTGCTCATACACTATTTA
GTTGCTCCATTACAAGGCCCTATGTTCAAAGGGCCACATGCATGTCTTTC
GTTCAGTTATGTTGATGCCCAGATTCCGGTCGATTGCGGGTGAGCGTAGC
ATCCAGATTCCACAATAAGCCAAACAATAGTGGCTCTCTGCTCGCACTCG
GGCGTCAAGCTATGTACCTCGGCGAGCTACCCACGACGGTGCCTTCGTAT
GTACAGCATGAACACTTAGGGCTAGCTTCTTCAGCCCGCAAAAATCTGGT
ACTGTAGCTCATCGGTACTTGGACGATTTTTGTCGCAAGGTGCACGAGGC
CGAGCGCGCCAATCTCTCGGCACGCACGGAGCTTCTCGAAGAGAAAATTC
GCCAGATGGAGGTCGACGGCCAGCGAGTAGTGGCGGAAGCGGAGAGCGCC
GCCAAGGACAGGTACTTGACGTAGACATTTTCTTTGTTCGTGTGGGGAGC
TGTCAAGGGAACAAAAGCGTACCCTTTGCGGTAGCACGTGGTTCTTTGGG
CTGGGCGAGGCCATGTCCGAAATTCGAGGGAGGGAACAAGGAAAGAGGCC
GGGTAGTCAGCCTTCTATCCTGAGAGCGTGAATGATGGGCATTTGACACT
TCGGGGAATGGTTTGGTGCCATTTATGGATCAAAGAAACGACAAGGAATC
CTGAGGGTGGTGGGTATTTGCCACTATGTCCGAAAATGTTACCCTGATGA
AGTGCCGTTCCCGTTCATGCCCCTCCGCCTCCTATTGTGCGGCATCTCAC
ACGTGCGGGGCCGGTTTCATGCACTGCTCGTACTTGCATTTCATGAACAC
TGCGACACCCATCTACCGGGTGGTATCTAGTCACGAAGAAGCCCTAGCCG
CGTCTGCAGCTAAGAGTAAACTGACTCAAGAGCTCGAAGCAGCGGCAGCG
CGAAACGAAGAGCTTTGTGAGACCGCCAAGGACAAGGAACAGGAGTTCCA
GGTGTCTCATGTTTAATTCGTTGCTACGATTCCCTTCAAGAAACTATTGT
AAACAGCGACGAAGAAACAACTTCGCAACATGCGGTTAGACAGCAAGATC
ACCCAATGCGTTCGTAGTCCCCGACTTAACGAAAAGGCAAGGACCCCCAC
GTTCGGTTTAGAGCACCTAAGTGTTTTATGGAAACATGCTGGTGCATCGT
AAACTGTCTATTACCAACAGAGACTATTGTGAAGTCGCCTGCGCTTGGTT
GTCCCTGTGTGAGCCGAAGACACATTTTTTGCACCCATTCTGAAACCTCT
CTTTTCGCACCTGAATGACTATTGTTTGAATGCTGCGCTTGTATCCAGCA
TTTGAGACAATTGACACCACGGTTCATTCCGCCAATATGTCGTGTTTATC
CTGGTGAGGGTGATGGTATAACACTACGTTTGTGCCTGCAGGCCCAACTG
GACCGTTTTATGGAGTATCCGAAAGCGGCCGAGAGGATGGCGGAGGAGTT
AGAGAGGTGAGGAACAGAATAAATCTTGATCACGCCGACTTGAGTGCATT
CAATGATGTGAAAATGTTGTCCATGCAAGGAATGAGACATGGTGGGTATC
CTTCAGATGGGCGATGGGCGTTTCACTCCTTAGGCGCTAACCCCCATGCC
GTAGACGTGCTTATCTGCCTAGATCTAAGCATCTCTTACTCTTGTCTCTC
ATAGCTTTGTCCAGTTTCAAAGCCCGTGATGGATTGTGCATGATCTGAGG
AAAATGTACTGAGGTTTTCAGGGCACGTATTGCAGCACGGTGGGCTTCTG
CCGTGAAATCGATACGGTGAACACCAACAACCGTGCTATCGAGTCCTACC
CTGGACTTCAACGTACAAAAGCCTCCACTGAAACCCCGAGCATACACCTC
TGATGAGGCCACCAGGTTGGATTCATTTCTTGAGAACGAACGATCTGCCG
AAATGTACTCCGTGCTGCTGTTGACTCAGGTGCAAAAAGACTGCTCGGCG
AGAAAAAAACTTGATGGTCCTGGAGCGAAAGGAATTTCGTCGACAGCTGC
ACATGTTTCAGAAGTGGCAGACGGAGAACAGCAACTTACGGGAGAAGGCC
AGAGCCCAGGAGATGCAGGTATCCCCTTCTCTCATCCGAAAGGCATGAAA
ATCCGACACCGAGCATCCAGCTTTCGTTCAGAATGTTGTATATTAAGCTC
GGAATAAATCTGGGGCCTGATGGGGATAAGGTTCCATGAGTGACCACCTT
GTCTACGTTACAGAAACGGTTGATGAAGCGCCAAGTGACCTTGCGCCCCT
TGCGAAAAGGAAGACAATCCGCCACACAGACATATGTTGGTCTTTTCAAG
AGTAATGGTCATTGGGGGGGGGATGTGTCTGCTGCAGGTTTTGCAGGAAG
TAGTTCCTCCGCAACGCGGTGAGCCTTGTCCCCCTTTGTCATTACCATAA
AGCGTTGCCACAGTTCCTCGTTCCTGCATGGTCGTCACAGCTAGCTTTCG
GGACGAATTCCGAAGCATTGATGCCATCGAGACGCCACACGTTAGTCATG
TCTTTCGTGGCAATGGACTGAGGTTGGTTCCCACCCTCCCTCCTCCTCTC
TGATGCCGAAACCGGGGGGGGAACTTGCCCAACATCAAAAGGTCGTGGCT
CTACGGCGCCAGCTAGCGGTGACCGAATCGGGGTTGGCCGGGAGTGCTTC
AACGAGAAAGGCGGTGATAGGGGGAACAGTGGATCGCTTGCAACGAGCAG
AGACCGCGGCAAAGCACCAGGTGGCCAACAGTAGCAAGACGAACTTCACG
CAGATTTTCGAGTCTTCGTCGGAATGATCTACATTGGAAAAGACATACCT
ATTCTATTGTGTTCGAGTTCATAATGAGGCGATCAGAACCTTGGTTTTCT
GGCCTGGATTTCGGTCGAGATCCGGTCGGTTATCTACAGAAGACAGAGAA
CAAAACTGCCATCGCTCGGGGATCAGCGCTTGGCCCTGCCATCTTCGGTG
TCGAATTGCCGAACGTTGGTTTCATCTCTCGAAACGGTCGCTTCCGTTGG
AGGCGCTCAACCGTGTGTGTTTGCGGTGGTTGTGTGACAGGTTCACAAGT
ACCGAGAGTTGGCAGGAGCGCGAGGGGTTCAAGCTGCGCAAATGAAGACG
GAGATCTCTTCCCTCAAGGCCACCATCAAAACCCTTCGACTCAAGTAAGC
GAAACCACAGTAATACATGCGTTCACCCCGCTTGCTGAGGGTAACGGTGA
TTGTTTATTTACTAAGGCACGATTTAGGGCCTAGGCCCCACATCGAATAC
CCTAACCGATAGGATTTTGCTCACCAGTTCCCGTCTCTCTGACGGCACCA
AGACAGCGCCCTTTGTCGTACACGGTTCTCGGCGCCTCCTCAATAGAGAG
CTCGCACAGTCTAGACTATCCGAGGGAAGAAACAAGAAACCGCAACAAAA
GAAGAACGTTGGCCCAGGTTTTTCTCTGACTGCCACCTTGCTGTGTGTAC
GCGGCTTCATGCCGCACCGAAAGGCTCGAGCCACCCGCACACGACTCCTA
CGAAACGGAGATAGCCAGACTCGCGAGGGTCAACCCCGAAGTGCTGGACA
TCCAGCAGAAGTCGGGGCTAAGCAAAGAGGACATGGAGGCCAGCATGGCG
CAGCTCAAGCTTCTACGGGAGAAGGTGCGGTCTCAAGCACGTGCATCTGC
ATACGAAAGAACACTGTTGGGGCTCACATCCTGTTGCTTCTCAACACCGT
CGAACTTCGTTGCATCGAAACCCTCCATGTGCCCTAAATGAGAACCAGGT
GTATTTCATCAACAATTTAAGTAAGCCATACGGGAGATCCCCCTCCCCCT
CTTCCCCCTCCTCGACCGGTATTCCATCTGAAAAAGTGGGAGGGTTCGGG
CCAACTATAACTCCCCCGGAACGTCATCATGAGCGTGGAACGGTTCCGTG
TTTCGCGCTTCCGACCAAAAAGGGCATTCACGAGAAAATGAAACTTCCCC
GTTCGGCACACAGGAGGAGCAGAAGGATGCGCTAATTGCGCTCGCGCGGG
AGCGAGACGAGTTCGCGTTGTGTATCAAGGACCTCAGAGCCCGAAACTCT
TGGCTCGAGAAACAAGTGCTAAAGACCCCGGACGCGCTCCGGTAAGGAAG
TCTGGGAAGCGGGATGAGAAGATATCACCGGCTAAATCTTGGCGTCACAG
AATGAGAACTTTCGGTGTCGAATTCTATAGGCCGATATCCTTGTTGTCTA
GCGCTAAATACGCGAACAGACCGACCGGCGGAAAAAGATGGACTTCGACT
GGCCTCCCTATCCCTCGCGCCTCTTTCGTCCCACGATTTCTTACCTTCTG
AGCCAAGTTGATTAGATCACCCGGTCCAATGCGCACAACGCGTGAACACG
AAAACTGGCTTTCATGGATTTTCAGTTTCTGCCTACACGATCGTGGCCTG
TTGGCAAATGTTTTGGTTGTGTCGTCGTCCTCATGACTGTTGCCGTTGTC
ATTGTCGTTGCCTTGTCGTTGCCGTCATCGTTGTCGTCGTTGTTGTTGTC
ACATGAAACCCGTTCTGGGCTCTCCCACTCCTACTCTTACCGGCAAGAAG
CATAACCTAACATTGGGTGCGGTTTGTCGATGGCTTCATAGGTCTGTGGC
GGAGGAGCGTGTGGCAGGTGCGGCCCCTACCAAACGACCCGATAATTCCA
AACGTGCGGAAACGTCGTCCAACCACGGCTGGATGACCACTCAGAACGGC
GGAGGCCGAGGGATCAAGAATCGCGCAGCCCCCGGTAGGGAGAACGAGGC
CGCACCGAGGCTGGAGAACCATTCGTGGGCCCAGCAGGGTTCCGGAGAGG
CGGGGGTAGGGTCAACGGCAAGGGTCAGACGAACAATAAAAATGCTCGAA
GATTGCGACTGGTGAGTGTGGGTGTGGGTGTGATCCGAATGAAAACAATT
GCCCATGTGCCGTTGAGCATTTGTGCCATGATGTAATTTAACCCCCGGCG
GGGATGCATTGAGGACAAGACCCCTAGAGAAGATTCGACAATTTTTTGCA
GTTCACCGGAGATTAAACGCACCGAGGACGCTGCGTAACACCTCTCCGTG
ATCCCACCACACCCACGTGTGTAGTTAGTCTAGGCACATTGTCCCCCCGC
CACTGACCCTCATCCTCCTTCCACACACCGCACTTCGACGATTGCACCCT
TTCGATGTGCAACCGTCAAACGCAAATGTCCTCGGCGGGGCGTCTCGCAT
CGAACAATGCACGATACAGGAGTATCGAGAAACAGCGTGAGCGAGAGACC
AGCGCCACCAACAATGTTAGTGCCCTACACGGTGGTGGCGGCGGCGGC

Coding sequence (CDS) from alignment at chr_00:1696420..1703867-

>Ec-00_001480.1 ID=Ec-00_001480.1|Name=Ec-00_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2232bp|location=Sequence derived from alignment at chr_00:1696420..1703867- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGATGAAATCGAACACATCGAAAACAGCGATGAGGGCCTCCGCGATCC
TTCCATTGCCGATGCACCTCTCAAGAAAGGGAAGAAAAGAACTCGCCATA
AGGCAACCAGAGGCAGCAAAAGACGGCCGAGGTCAGCAAACTTGCTAACA
TCAGCGGCAAACAGCAGCAGCTCAAACCGCCCTGGTGTAGACGCCAAACT
TGGAGACGAAAACACCGAACGACAGCGACAGCAGAGGGAGGGGTCGAGAA
TGCGTGGCGATGGCCAAAGGATAAGCAGGAACGTCAATTCCGCGTCAGCC
CCACAGCTACTAATGAGGAATACCACCCCTGGTATTGCTGGTGATAGAAA
ACGCGCAGATGAAAACACCACCGGTTCCGTGCACGAGGAAGGAGGAGGTC
GGCGTCTTTTTGGCCGGAGAAGAACCCCCTCTGCGGTGAACAATGTCGAC
GGGGTTGATGACTTGGACGTTGAAGAAGAGGGAGAGCTGGAGAAAGCACA
ACAAAGCATCAAGGATACTACTCGGTCGTTGCAAGAGTTGGGGCTTCAGA
AACAGGAAATAGAGTTGCGGCACCGACAAATGGAGAACCGCTGCACGCAA
TTGGAAGTCGAGTTGAGCTCTAAGCAGAGCGAGCTGAAGTCCTACAAGGC
CGAGGTTCGTGCCAAGATCATCGCCGTCGGCAAGGCGGAGATGATCCTCA
ACGAGGTCTGCCTCGCGATAGCCCGCAGGGTGGGACGCGCGGAGGGGACT
CAGATGTCGGACAACAAGGGCGCTATTCTGATGGAGGTGCACAGAAATCC
AGCGGAGTTCGCCTCGCAAATAAAGAAAAATATTGTCGCCCAGTTTTCCA
AGTGGGACATCGATCGCGTGGACTTAGAGGCGTCGGCCGAACTTGCAAGG
GAGAAGGCGACCGATGCTATCCAGGTGCACGAGGCCGAGCGCGCCAATCT
CTCGGCACGCACGGAGCTTCTCGAAGAGAAAATTCGCCAGATGGAGGTCG
ACGGCCAGCGAGTAGTGGCGGAAGCGGAGAGCGCCGCCAAGGACAGTCAC
GAAGAAGCCCTAGCCGCGTCTGCAGCTAAGAGTAAACTGACTCAAGAGCT
CGAAGCAGCGGCAGCGCGAAACGAAGAGCTTTGTGAGACCGCCAAGGACA
AGGAACAGGAGTTCCAGGCCCAACTGGACCGTTTTATGGAGTATCCGAAA
GCGGCCGAGAGGATGGCGGAGGAGTTAGAGAGGTGCAAAAAGACTGCTCG
GCGAGAAAAAAACTTGATGGTCCTGGAGCGAAAGGAATTTCGTCGACAGC
TGCACATGTTTCAGAAGTGGCAGACGGAGAACAGCAACTTACGGGAGAAG
GCCAGAGCCCAGGAGATGCAGGTCGTGGCTCTACGGCGCCAGCTAGCGGT
GACCGAATCGGGGTTGGCCGGGAGTGCTTCAACGAGAAAGGCGGTGATAG
GGGGAACAGTGGATCGCTTGCAACGAGCAGAGACCGCGGCAAAGCACCAG
GTTCACAAGTACCGAGAGTTGGCAGGAGCGCGAGGGGTTCAAGCTGCGCA
AATGAAGACGGAGATCTCTTCCCTCAAGGCCACCATCAAAACCCTTCGAC
TCAAGCTCGAGCCACCCGCACACGACTCCTACGAAACGGAGATAGCCAGA
CTCGCGAGGGTCAACCCCGAAGTGCTGGACATCCAGCAGAAGTCGGGGCT
AAGCAAAGAGGACATGGAGGCCAGCATGGCGCAGCTCAAGCTTCTACGGG
AGAAGGAGGAGCAGAAGGATGCGCTAATTGCGCTCGCGCGGGAGCGAGAC
GAGTTCGCGTTGTGTATCAAGGACCTCAGAGCCCGAAACTCTTGGCTCGA
GAAACAAGTGCTAAAGACCCCGGACGCGCTCCGGTCTGTGGCGGAGGAGC
GTGTGGCAGGTGCGGCCCCTACCAAACGACCCGATAATTCCAAACGTGCG
GAAACGTCGTCCAACCACGGCTGGATGACCACTCAGAACGGCGGAGGCCG
AGGGATCAAGAATCGCGCAGCCCCCGGTAGGGAGAACGAGGCCGCACCGA
GGCTGGAGAACCATTCGTGGGCCCAGCAGGGTTCCGGAGAGGCGGGGGTA
GGGTCAACGGCAAGGGTCAGACGAACAATAAAAATGCTCGAAGATTGCGA
CTGGAGTATCGAGAAACAGCGTGAGCGAGAGACCAGCGCCACCAACAATG
TTAGTGCCCTACACGGTGGTGGCGGCGGCGGC

Synonyms

The feature 'Ec-00_001480.1' has the following synonyms


Synonym
Esi0013_0105
Esi_0013_0105