Ec-00_001450.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001450.1
Unique NameEc-00_001450.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length263
Homology
BLAST of Ec-00_001450.1 vs. uniprot
Match: D8LEA0_ECTSI (Thioredoxin-like_fold domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA0_ECTSI)

HSP 1 Score: 521 bits (1343), Expect = 2.670e-186
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 2
Query:  128 MRGNYGRSPPAHRNMAAASRRLSFRTLLGVALLFGLTLTILAAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSAVPWFKGWAAQNAE 913
            MRGNYGRSPPAHRNMAAASRRLSFRTLLGVALLFGLTLTILAAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSAVPWFKGWAAQNAE
Sbjct:    1 MRGNYGRSPPAHRNMAAASRRLSFRTLLGVALLFGLTLTILAAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSAVPWFKGWAAQNAE 262          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A815YPJ9_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A815YPJ9_9BILA)

HSP 1 Score: 126 bits (317), Expect = 4.000e-31
Identity = 69/201 (34.33%), Postives = 113/201 (56.22%), Query Frame = 2
Query:  263 VQSEPAIPF--DGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLS 859
            + ++  IP   DGYG      G  +A + +E++LD  C DC  +WP + +V +AYG +  F +  FPLPYH N+F A++    I   +  + D S+ ++ T+VF  Q+   ND+T+ MT PQ+ D L ++      ++   F  GMA+ ++  +TR  +KY C  GV GTP   I G+ A+  D   +  DW+ ++DP+L+
Sbjct:   14 ISAQAPIPTRPDGYGV----GGPADAHVVIEMFLDPLCPDCKASWPTVLQVIQAYGTKIHFRFHTFPLPYHTNSFVASQGVHVISNVTNRNLD-SIFTYVTKVFENQETWYNDATKNMTMPQVVDSLAAFVAQLGLVTKAQFLAGMANDDINFETRVSWKYACSRGVVGTPTFLINGV-ATSADDSWSLADWKSVIDPILA 208          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A820AKD2_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820AKD2_9BILA)

HSP 1 Score: 125 bits (315), Expect = 2.840e-30
Identity = 72/208 (34.62%), Postives = 112/208 (53.85%), Query Frame = 2
Query:  251 AAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSA 874
            A V + S P    DGYG      G  +A + VE++LD  C DC  +WP + +V + YG +  F +  FPLPYH N+F A++    I   +  + DA +  + T+VF  Q++  ND+T+ MT PQ+ D L ++      ++ D F  GMA+ ++  +TR  +KY C   V GTP   I G+  S  D   +  DW+ ++DP+L+    A
Sbjct:   20 AQVPIPSHP----DGYGV----GGPADAHVVVEMFLDPLCPDCKASWPTVLQVIQYYGTKIHFRFHTFPLPYHTNSFVASQGVHVIANATSRNLDA-IFLYVTKVFENQEKWYNDATKTMTMPQVVDSLATFVAQLGLVTKDKFLAGMANDDINDETRISWKYACSRNVVGTPTFLINGVAVSA-DASWSVDDWKSVIDPILASNGVA 217          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A2R6WDY7_MARPO (Thioredoxin-like_fold domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WDY7_MARPO)

HSP 1 Score: 105 bits (262), Expect = 1.930e-23
Identity = 70/213 (32.86%), Postives = 104/213 (48.83%), Query Frame = 2
Query:  245 ILAAVAVQSEPAIP----FDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTE-VFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTS 868
            +L +++V    AIP    +DG+G   +   ++   + +E ++D  C DC +AWP + +V   YG    F+   FP+P+H+NAF AA+A     L+   S ++S      E +F  QD   ND+T   T   +       A    G+ AD F  G  D+  +  TR  FKYGC   V  TP   + GI  S  D   + +DW  +LDPL S  S
Sbjct:   16 VLCSISVSLVAAIPIPAHYDGFG---IPPRSIPEPVLLEAFIDPICIDCKIAWPTVTKVLSIYGSSLSFIVHPFPVPFHHNAFFAARA-----LHIASSLNSSSTFPLLELIFKKQDSFLNDATNDETPASVVSRFVDLAAE-VGLPADEFAAGFTDSNTDQATRISFKYGCARYVTSTPSFLLNGIYVSA-DETWSVEDWAKLLDPLTSSLS 218          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A194ANN1_PINFU (Thioredoxin-like_fold domain-containing protein n=1 Tax=Pinctada fucata TaxID=50426 RepID=A0A194ANN1_PINFU)

HSP 1 Score: 105 bits (262), Expect = 3.350e-23
Identity = 67/217 (30.88%), Postives = 108/217 (49.77%), Query Frame = 2
Query:  233 LTLTILAAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYG-DRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSAVP 880
            L L+  A V +  +P + F  YG+     G   A +++E ++   C D    +  +  VA  YG  R    Y LFPLPYH NAF AAKA + +  ++  +E      F   ++   D  SND+T  M++ ++   L  + +  + +S   F   M+   +E  TR ++KY C  G  GTP   +  +L +  D   T  +W+ +LDPLL  TS+++P
Sbjct:   10 LVLSAFAQVPIPKQP-LGFT-YGN-----GDASAQIQLEAFMGPLCPDSKECFATLQNVASFYGPSRLRLRYHLFPLPYHRNAFIAAKATRIVDRFTNSNE---TIDFMGTIYTNIDSFSNDATHGMSEAEVIQKLADYGSKMAKVSMKEFVDMMSSDTIEGDTRTEWKYTCSRGFSGTPTFTVNDVLVAA-DPKWTVSEWRQVLDPLLGITSNSIP 215          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A5A7Q744_STRAF (Thioredoxin superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q744_STRAF)

HSP 1 Score: 99.8 bits (247), Expect = 1.880e-21
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 2
Query:  296 YGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQ-LYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSR 862
            YG   L+ G +     +E + D  C D   +WP +  V + YGDR + + RLFPLPYH NAF A++A   +  + S  S    + +FF      Q+  S +ST  +++  + D +  +++ + G S      G  + E +  TR  FK G + GV GTPQ ++ G + +       +  W+ +LDPL+S+
Sbjct:   30 YGDKSLKAGQI----LIEAFFDPVCPDSRNSWPPLKEVLKYYGDRVKLITRLFPLPYHANAFVASRAITIVNDVVSTSSAYLLLEAFFN----NQETFSGNSTFNLSRAVVTDRIVKFSSKAVGHSQSAIQSGFQNDETDYLTRVGFKQGGIRGVYGTPQFFVNGFIFAEPGSAQNYSTWRAVLDPLVSK 211          
BLAST of Ec-00_001450.1 vs. uniprot
Match: B3S4F9_TRIAD (Thioredoxin-like_fold domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S4F9_TRIAD)

HSP 1 Score: 98.6 bits (244), Expect = 5.820e-21
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 2
Query:  233 LTLTILAAVAVQSEPAIPF-DGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYG-DRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLL 856
            L L  L  V     P +P  DGY   +   G+ EA + +E ++DLAC DC  AWP++ ++A++YG ++    + + PL YH  A+ AA   + +   +    D  + ++   VF  Q E  N  T  M+  Q+       A  ++G+SA  F   + ++ ++  TR   K     GV GTP  +I GI   G   + T + W+ ++DPLL
Sbjct:    5 LVLFALIPVIYSQAPILPRPDGY---VYHNGSPEAPIHMEAFIDLACPDCKTAWPILKKLADSYGPNKLRMTFHINPLVYHRQAYYAAMGVRALVAANVSVHD--LFNYMDAVFKNQSEFYNKPTLKMSGLQVIQAYAKLAHKAAGISAMKFANALQNSGIDHTTRLSSKLAWERGVTGTPSFFINGIRVIG-QSNWTVKQWKKVIDPLL 208          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A176WPY7_MARPO (Thioredoxin-like_fold domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WPY7_MARPO)

HSP 1 Score: 101 bits (251), Expect = 3.750e-20
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 2
Query:  287 FDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTE-VFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTS 868
            +DG+G   +   ++   + +E ++D  C DC +AWP + +V   YG    F+   FP+P+H+NAF AA+A     L+   S ++S      E +F  QD   ND+T   T   +       A    G+ AD F  G  D+  +  TR  FKYGC   V  TP   + GI  S  D   + +DW  +LDPL S  S
Sbjct:  621 YDGFG---IPPRSIPEPVLLEAFIDPICIDCKIAWPTVTKVLSIYGSSLSFIVHPFPVPFHHNAFFAARA-----LHIASSLNSSSTFPLLELIFKKQDSFLNDATNDETPASVVSRFVDLAAE-VGLPADEFAAGFTDSNTDQATRISFKYGCARYVTSTPSFLLNGIYVSA-DETWSVEDWAKLLDPLTSSLS 805          
BLAST of Ec-00_001450.1 vs. uniprot
Match: UPI00145888FB (uncharacterized protein LOC117332932 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145888FB)

HSP 1 Score: 96.3 bits (238), Expect = 9.120e-20
Identity = 68/218 (31.19%), Postives = 109/218 (50.00%), Query Frame = 2
Query:  212 GVALLFGLTLTILAAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYG-DRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSR 862
            G+ ++F L   +   + + S+P     G+ + +   G   A +++  +L   C D   A+P + +VA+ YG DR   +  LFPLPYH NAF AAK A+   + S G+   S  S+ T V+      SND T   T+ Q++D+  S A + + +    F+    D+ +E  TR  +KY    GV  TP   I  +L    +   T +DW+ ++D LL R
Sbjct:    5 GLFVVFALIGAVYGQIPIPSKPL----GFSYGL---GNKSAPIQLSTFLGPLCPDSQNAFPTLLKVADYYGPDRVRLITHLFPLPYHRNAFLAAKGAQITNVLSSGN---STYSWMTAVYSNLAAFSNDVTHDKTEKQVQDMFASMAKTLN-LDQTKFNTMYKDSGIEEATRLDWKYTATRGVAWTPAFMINDVLIQA-EPTWTLEDWKKVIDSLLGR 210          
BLAST of Ec-00_001450.1 vs. uniprot
Match: A0A7S3H9Z6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9Z6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.420e-19
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  443 YRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAE-----VEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLS 859
            YR+FPLPYH  AF  +KAA+ +Q    G+ +A V +FF   +  QD I N +T   T   +  ++E WA   +G++ +N+ +GM  +      +E++TR  +K  C+ GV  TP   I G+   GLD   TF+DWQ  LDPL++
Sbjct:    2 YRVFPLPYHQQAFIVSKAAQLVQ--QLGNPEA-VFTFFDTAYANQDLIYNANTLDKTYNDVVKLVEPWAVQGTGVTEENYFIGMNSSTSVGNPIEMETRYMWKQVCIEGVFATPLFQIDGLKVGGLD---TFEDWQATLDPLVA 139          
The following BLAST results are available for this feature:
BLAST of Ec-00_001450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA0_ECTSI2.670e-186100.00Thioredoxin-like_fold domain-containing protein n=... [more]
A0A815YPJ9_9BILA4.000e-3134.33Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]
A0A820AKD2_9BILA2.840e-3034.62Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A2R6WDY7_MARPO1.930e-2332.86Thioredoxin-like_fold domain-containing protein n=... [more]
A0A194ANN1_PINFU3.350e-2330.88Thioredoxin-like_fold domain-containing protein n=... [more]
A0A5A7Q744_STRAF1.880e-2131.05Thioredoxin superfamily protein n=1 Tax=Striga asi... [more]
B3S4F9_TRIAD5.820e-2130.48Thioredoxin-like_fold domain-containing protein n=... [more]
A0A176WPY7_MARPO3.750e-2033.33Thioredoxin-like_fold domain-containing protein n=... [more]
UPI00145888FB9.120e-2031.19uncharacterized protein LOC117332932 n=1 Tax=Pecte... [more]
A0A7S3H9Z6_9STRA2.420e-1938.19Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1683932..1686569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score528.5
Seed ortholog evalue1.8e-147
Seed eggNOG ortholog2880.D8LEA0
Length917
Hectar predicted targeting categorysignal anchor
Gene idEc-00_001450.1
EggNOG free text desc.tRNA 5'-leader removal
EggNOG OGsKOG2567@1,KOG2567@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001450Ec-00_001450Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1683932..1686569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001450.1Ec-00_001450.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1683932..1686441 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001450.1.4Ec-00_001450.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1683932..1684160 -
Ec-00_001450.1.3Ec-00_001450.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1684862..1685055 -
Ec-00_001450.1.2Ec-00_001450.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1685565..1685714 -
Ec-00_001450.1.1Ec-00_001450.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1686226..1686569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001450.1CDS:Ec-00_001450.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1683932..1684160 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0014505UTR:Ec-00_001450.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1686442..1686569 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001450.1 ID=Ec-00_001450.1|Name=Ec-00_001450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=263bp
MRGNYGRSPPAHRNMAAASRRLSFRTLLGVALLFGLTLTILAAVAVQSEP
AIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGD
RTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQ
DEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRN
QFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSAV
PWFKGWAAQNAE*
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spliced messenger RNA

>Ec-00_001450.1 ID=Ec-00_001450.1|Name=Ec-00_001450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=917bp|location=Sequence derived from alignment at chr_00:1683932..1686569- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CACACGGCCTGCTCCAACTGTAGCCTACGTGCGGTGGTGAGCGCAATCTT
GCCCACCTACCCTACAGTTATAGATCTATAGGTTTGGTTTCTGCTGCTTT
GCCGGCAAGGAGGACATACTCTTAGTACATGCGGGGGAACTACGGTCGCA
GTCCCCCCGCACATCGTAACATGGCAGCAGCTAGCAGACGATTGTCATTT
CGAACCCTGTTGGGGGTTGCTCTTTTGTTTGGGCTGACCCTCACCATCCT
AGCGGCTGTGGCTGTGCAGTCGGAGCCGGCGATTCCGTTTGACGGATATG
GGCACGTGATACTTCGGCAGGGAACCCTCGAGGCAGCTCTCAAGGTGGAA
GTTTACCTTGACCTGGCATGCTCGGACTGCGCCCTAGCTTGGCCGGTAAT
GAACCGCGTCGCCGAGGCCTACGGCGACCGGACGGAGTTCTTGTACCGCC
TCTTCCCGCTGCCGTACCACAACAACGCCTTCAAAGCCGCAAAGGCGGCT
AAGACCATCCAACTCTACTCCAGAGGCAGCGAAGACGCTTCGGTCGCATC
GTTTTTCACGGAAGTCTTCATTGGGCAGGATGAGATCTCGAACGACTCCA
CCGAACTCATGACACAGCCTCAGATCGAGGACATTTTGGAGTCTTGGGCC
ACCTCCTCCTCGGGCATGAGCGCCGACAACTTCCACATGGGCATGGCCGA
CGCCGAGGTCGAGATCCAAACGCGAAATCAGTTCAAGTACGGCTGCCTTC
ATGGTGTGGACGGCACCCCGCAGGTGTATATAGGAGGCATTTTGGCGAGT
GGGTTGGACGGGGATGCCACGTTCCAAGACTGGCAGGACATCCTCGACCC
TCTTCTCAGTAGAACGTCGTCGGCAGTACCATGGTTCAAGGGGTGGGCTG
CTCAAAACGCCGAGTGA
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protein sequence of Ec-00_001450.1

>Ec-00_001450.1 ID=Ec-00_001450.1|Name=Ec-00_001450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=263bp
MRGNYGRSPPAHRNMAAASRRLSFRTLLGVALLFGLTLTILAAVAVQSEP
AIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGD
RTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQ
DEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRN
QFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTSSAV
PWFKGWAAQNAE*
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mRNA from alignment at chr_00:1683932..1686569-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001450.1 ID=Ec-00_001450.1|Name=Ec-00_001450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2638bp|location=Sequence derived from alignment at chr_00:1683932..1686569- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CACACGGCCTGCTCCAACTGTAGCCTACGTGCGGTGGTGAGCGCAATCTT GCCCACCTACCCTACAGTTATAGATCTATAGGTTTGGTTTCTGCTGCTTT GCCGGCAAGGAGGACATACTCTTAGTACATGCGGGGGAACTACGGTCGCA GTCCCCCCGCACATCGTAACATGGCAGCAGCTAGCAGACGATTGTCATTT CGAACCCTGTTGGGGGTTGCTCTTTTGTTTGGGCTGACCCTCACCATCCT AGCGGCTGTGGCTGTGCAGTCGGAGCCGGCGATTCCGTTTGACGGATATG GGCACGTGATACTTCGGCAGGGAACCCTCGAGGCAGCTCTCAAGGTGACA AGAAACGTGGTTGAAGTTGTTGCACGAGCGCCCTCTGACGATGCGTATTT CTGCCTAGGCTTGCACCACACAAGACCCCCAAACGATACGAAGAGAAGAG ATGGGCATACATGCACGAGCTGCAGCCGACCGCCAAGCCCCGGGTCAGAA CAACAGCGCATCTCGCTCTCTCTCTCGCTCGCTCTCTCGTTCTCTCTCTC TCTGCATGAAGATTCTTATCTTCCCATTTCCAGGTCGTGATGCGGAAGGT CTGGTCCTCACAACCAACATGTAATTAATCGGTTGAGGCAACCGCTGTGT GTGTGACACACTAATGCCCCTGCGCCCTCCCGCTTTTGCCATTCCACGGG GTGGCATGCTTCTAGACTTTGTACTGCTGTAGCGTCTTCGAAGCCATTTG TGTCCTTCACGCCGCCCAACATTGCCCGCTGAGACGTTGGATACCGTACC CCACCGAATACCACAGTCACTTTTCGTGAGCAGTTTCTCGTTGTTCCCGT GGCAGGTGGAAGTTTACCTTGACCTGGCATGCTCGGACTGCGCCCTAGCT TGGCCGGTAATGAACCGCGTCGCCGAGGCCTACGGCGACCGGACGGAGTT CTTGTACCGCCTCTTCCCGCTGCCGTACCACAACAACGCCTTCAAAGCCG CAAAGGTAAGACAGCCCACCTCCAAACAACCGCGAGCCGTGGAAGCCGGG AGTCAGGGTGAGACACGTTCCACCCTAGAATCGCACGCAGTGACTCGTCG TGTAGATACATAGTGGGAGCAGTATTTCGTGCTGAAAGTCGGACAGCCAT GCTTAGACGACACGGGGGAGGGGGGCGGGGGACACATAAATGTTGACGGG AAGAACTCGGGTGTTGTCGTCGTAAAAGTCGTGAGGGGGGAGGGGATATG AAGATTTTCAGCTTGAGCAGCACGTCTTAACGGCTGACCCCCGGGATCCC TAAGATTGGCAAGAAGCCTGGTGAAATGAACTTGGGCGAAGGACGTGGCG AACCCTTAGCGTTGCACACGTTGCTATGGCGTTCCTTCGCAATGTACGTT TCGTGGGCAGGGCTTTGCACTGGAGATAAGTGGGCGTGATGTGTGTTGGC CATCGGACACTCGTTTCTCCTAACGTCCATTATGTTCGCTCGACCCACCC CGCTCGGTGTGCAGGCGGCTAAGACCATCCAACTCTACTCCAGAGGCAGC GAAGACGCTTCGGTCGCATCGTTTTTCACGGAAGTCTTCATTGGGCAGGA TGAGATCTCGAACGACTCCACCGAACTCATGACACAGCCTCAGATCGAGG ACATTTTGGAGTCTTGGGCCACCTCCTCCTCGGGCATGAGCGCCGACAAC TTCCACATGTGAGTGAGGGGGGAAGTTCGGGGTTACCTTAACCACACGTA GTGCTCAGCGTCTGTTGTCAACTGGTACGGCCGCGGAAAAGATCCCCGAA GAATGAACTTCCTTTTTGACGCCAACCCGCGCATGGCGACCGCCACGCTC TTTCGGTGAGTCCTCAACGGCGGTGACCAGTGCCTTTGGGCCCAGCTCCA TGTGTCAACGCAAGATAAATGTGTGAGCTGATACTTCCACGTACTCGCTG TATTTATCTCCAACTCTGACGTGTCACTCCTACTTTACAGCTTGCGTTGT GACTTGGCATTTGAAACCATGTGCTGGGTTTCCTGCGAGTTTTCGTATGA CTTCAATACAGCGGCACCGGACACCGTTCAAGAGGTTGCCCTCGCAACAA GTTTGGGCTGCATCATCTAGGTCAACAAGAAACACGGTGTTTCACACGAA CGTTTCGAAATGCGACACTTTCTGAGGAAGGAACGGATTGCTGGGCTGCA GTATTGTATTGATGCTGCACGAATTGTTGGGTGTACGATAAAGGGACAAT CGAGTAAACAGTTTACCACGACGCCCACGACGCCCACCCCTCTCTATTGT ATGTTGTGTACCTGCCTGGGACTCACGTCCAGTCCAGCCCAAAAATACAT GCAACGTGTCTGATGACCACACATATTCTTGGTTTTCGCGGCCCCGCCAA AACGCGCAGGGGCATGGCCGACGCCGAGGTCGAGATCCAAACGCGAAATC AGTTCAAGTACGGCTGCCTTCATGGTGTGGACGGCACCCCGCAGGTGTAT ATAGGAGGCATTTTGGCGAGTGGGTTGGACGGGGATGCCACGTTCCAAGA CTGGCAGGACATCCTCGACCCTCTTCTCAGTAGAACGTCGTCGGCAGTAC CATGGTTCAAGGGGTGGGCTGCTCAAAACGCCGAGTGA
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Coding sequence (CDS) from alignment at chr_00:1683932..1686569-

>Ec-00_001450.1 ID=Ec-00_001450.1|Name=Ec-00_001450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=789bp|location=Sequence derived from alignment at chr_00:1683932..1686569- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGGGGAACTACGGTCGCAGTCCCCCCGCACATCGTAACATGGCAGC
AGCTAGCAGACGATTGTCATTTCGAACCCTGTTGGGGGTTGCTCTTTTGT
TTGGGCTGACCCTCACCATCCTAGCGGCTGTGGCTGTGCAGTCGGAGCCG
GCGATTCCGTTTGACGGATATGGGCACGTGATACTTCGGCAGGGAACCCT
CGAGGCAGCTCTCAAGGTGGAAGTTTACCTTGACCTGGCATGCTCGGACT
GCGCCCTAGCTTGGCCGGTAATGAACCGCGTCGCCGAGGCCTACGGCGAC
CGGACGGAGTTCTTGTACCGCCTCTTCCCGCTGCCGTACCACAACAACGC
CTTCAAAGCCGCAAAGGCGGCTAAGACCATCCAACTCTACTCCAGAGGCA
GCGAAGACGCTTCGGTCGCATCGTTTTTCACGGAAGTCTTCATTGGGCAG
GATGAGATCTCGAACGACTCCACCGAACTCATGACACAGCCTCAGATCGA
GGACATTTTGGAGTCTTGGGCCACCTCCTCCTCGGGCATGAGCGCCGACA
ACTTCCACATGGGCATGGCCGACGCCGAGGTCGAGATCCAAACGCGAAAT
CAGTTCAAGTACGGCTGCCTTCATGGTGTGGACGGCACCCCGCAGGTGTA
TATAGGAGGCATTTTGGCGAGTGGGTTGGACGGGGATGCCACGTTCCAAG
ACTGGCAGGACATCCTCGACCCTCTTCTCAGTAGAACGTCGTCGGCAGTA
CCATGGTTCAAGGGGTGGGCTGCTCAAAACGCCGAGTGA
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Synonyms
The feature 'Ec-00_001450.1' has the following synonyms
Synonym
Esi0013_0103
Esi_0013_0103