Ec-00_001390.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001390.1
Unique NameEc-00_001390.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length62
Homology
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BLAST of Ec-00_001390.1 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 4.470e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 MGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 183
            MGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR
Sbjct:   47 MGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 107
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BLAST of Ec-00_001390.1 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.190e-8
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    7 ETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQER 171
            ETDP ++  LK  A+RGLSNY +HES S D +LK RME  +    A++ + Q+ R
Sbjct:   50 ETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRAR 104
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BLAST of Ec-00_001390.1 vs. uniprot
Match: A0A7S1ZML8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZML8_TRICV)

HSP 1 Score: 50.1 bits (118), Expect = 5.370e-6
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    7 ETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADL 150
            E DP KIE++K GAIR LSNY+++ESG+ D +L K M       ++ +
Sbjct:   75 EKDPAKIESMKAGAIRALSNYMLYESGAKDQKLGKAMNKFNQDTISGI 122
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BLAST of Ec-00_001390.1 vs. uniprot
Match: A0A024GHE4_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHE4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 8.210e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    7 ETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEA 123
            ETDP KIE LKG A+RGLSNYLV  + S D  +K  M++
Sbjct:   82 ETDPEKIEMLKGNAVRGLSNYLVMANASKDKGMKNAMKS 120
The following BLAST results are available for this feature:
BLAST of Ec-00_001390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LE94_ECTSI4.470e-34100.00Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A835Z7F8_9STRA4.190e-847.27Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S1ZML8_TRICV5.370e-645.83Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A024GHE4_9STRA8.210e-558.97Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1611112..1612037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length186
Hectar predicted targeting categoryother localisation
Gene idEc-00_001390.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001390Ec-00_001390Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1611112..1612037 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001390.1.3Ec-00_001390.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1611112..1611208 -
Ec-00_001390.1.2Ec-00_001390.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1611564..1611608 -
Ec-00_001390.1.1Ec-00_001390.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1611994..1612037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001390.1CDS:Ec-00_001390.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1611112..1611208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001390.1Ec-00_001390.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1611112..1612037 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001390.1 ID=Ec-00_001390.1|Name=Ec-00_001390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=62bp
MGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADL
KQRQQERDGKR*
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spliced messenger RNA

>Ec-00_001390.1 ID=Ec-00_001390.1|Name=Ec-00_001390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=186bp|location=Sequence derived from alignment at chr_00:1611112..1612037- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAGACCGACCCAGTCAAGATAGAAGCGCTCAAGGGAGGCGCAAT
ACGAGGATTGTCAAACTACTTGGTGCACGAATCGGGCAGCAACGACCCGC
AACTGAAGAAGCGAATGGAAGCAGTCAAGACCCACGCCTTGGCCGACCTC
AAGCAACGACAACAGGAACGGGACGGGAAGCGGTGA
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protein sequence of Ec-00_001390.1

>Ec-00_001390.1 ID=Ec-00_001390.1|Name=Ec-00_001390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=62bp
MGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADL
KQRQQERDGKR*
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mRNA from alignment at chr_00:1611112..1612037-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001390.1 ID=Ec-00_001390.1|Name=Ec-00_001390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=926bp|location=Sequence derived from alignment at chr_00:1611112..1612037- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGAGACCGACCCAGTCAAGATAGAAGCGCTCAAGGGAGGGTGAGG
CACGAAACATAATTTGTCGTTCAGAGTACCACACAATTTCTGTTGTTCGC
CCATTGTAGCTTGGGGGTAATTCATTTATGATCAGCGTACCTTGAGCCGC
TCACAGCAGAAGTTATGTGCCTCTGTGATAGGTGCCTATGCACTCGTCCA
GGAATGGGGCTGCCTGTTCTCCGAGCACAAAAAAAACTGTCGCGGTTATT
CGTCCAGCGGTTAGTGCAGGACTTACATGCTGTCCAAGGGGAATCTGCGC
GTATTGTTGGACCTCGCGCTGCCGACTTTTTTTTATTCTAATACATACCA
GAGCGGTTTCAGTCGGCGACAAATCAATCCTACCTTGTGCGCGCTCGTAC
GTCGGTCTGCCCTGCCTTGTATCTGGCAGCGCAATACGAGGATTGTCAAA
CTACTTGGTGCACGAATCGGGCAGGTGAGGAAGCCAGCTTGACTACTCTG
TACAGCAGCAGTGGTGTTTTATTTCACACGCTGACCTCCTCTTTATCCTG
CACTGCTGTACCGTCTAACTACCTCGAAGACGTTTCCTGCTCACAGACAA
TATTTTCAGCTTTCCCGTACCTTTCAAAATCACAGTTGGTTGACACGCCA
GCCAGAGCCACGCGATGTATGTGTAGCCTCACGTGCGCTTCCAGTTTTTT
TTTTACGAAATCACCTTCTTCGCCTCCTGTTTCAGTCGTTTTTCTTTTGT
TCTCGTCCTTCTTCCACTTCCTCCTTCCTCTTCGCTTCTTTTGCGGAACC
ACCGCTTTACGCTTTGTCTGATTGGTTAGCAACGACCCGCAACTGAAGAA
GCGAATGGAAGCAGTCAAGACCCACGCCTTGGCCGACCTCAAGCAACGAC
AACAGGAACGGGACGGGAAGCGGTGA
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Coding sequence (CDS) from alignment at chr_00:1611112..1612037-

>Ec-00_001390.1 ID=Ec-00_001390.1|Name=Ec-00_001390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=186bp|location=Sequence derived from alignment at chr_00:1611112..1612037- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGAGACCGACCCAGTCAAGATAGAAGCGCTCAAGGGAGGCGCAAT
ACGAGGATTGTCAAACTACTTGGTGCACGAATCGGGCAGCAACGACCCGC
AACTGAAGAAGCGAATGGAAGCAGTCAAGACCCACGCCTTGGCCGACCTC
AAGCAACGACAACAGGAACGGGACGGGAAGCGGTGA
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Synonyms
The feature 'Ec-00_001390.1' has the following synonyms
Synonym
Esi0013_0092
Esi_0013_0092
Putative NADH co