Homology
BLAST of Ec-00_000050.3 vs. uniprot
Match: A0A6H5JAX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX9_9PHAE) HSP 1 Score: 374 bits (960), Expect = 5.370e-122 Identity = 200/214 (93.46%), Postives = 204/214 (95.33%), Query Frame = 1 Query: 1561 MLGRGGSEAVANGSRSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGVFAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVSPARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR 2202
MLGRGGSEAVANGSRSAIAA AGASTLP GFSSAAGGHYRVPTPTEQTPSPRKGMP G GGGVFAFGVDSPDSSGPDKRDDHGYFEAS GGSK+AGGCGGNLGTGYEQG VSPARRWRSED+GGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAAC RER+AGRLRLEAQRRHSSEEILHLE EGRRL+AEVARLRR
Sbjct: 1 MLGRGGSEAVANGSRSAIAAAAGASTLPSTGFSSAAGGHYRVPTPTEQTPSPRKGMPYGGGGGVFAFGVDSPDSSGPDKRDDHGYFEASEGGSKKAGGCGGNLGTGYEQGQGVSPARRWRSEDSGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACARERNAGRLRLEAQRRHSSEEILHLEAEGRRLEAEVARLRR 214
The following BLAST results are available for this feature:
BLAST of Ec-00_000050.3 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| A0A6H5JAX9_9PHAE | 5.370e-122 | 93.46 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Length | 2368 |
| Hectar predicted targeting category | other localisation |
| Gene id | Ec-00_000050.3 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=251bp
MNTAVHPSPASAGNRPIACFPQGPSPDMKLTSDSSGMLGRGGSEAVANGS
RSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGV
FAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVS
PARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVT
ARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR
* back to topspliced messenger RNA >Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2368bp|location=Sequence derived from alignment at chr_00:36544..39463- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
TAGGACGTGACAAGACATGCACTCGCAGGGTGTCGGCGACCAGCGCAGCA
TTCAGAGCCGAGAACAGACAGACACACATAGCGCGATGCTAGAGAAAGGA
GAGACAAGCCAGGGCTGCAAGGCGGGCTCGAGGGTTCGAACGGGAGCGGA
CGAGAAAGCGTGGCTCTCGCGGCAAGAACTTGCATCCAAGCGCTCGACAG
CAGATCCTCGCAGCAGCCAAGCTTTCCACCAACAACGCTCACGGCCAGCT
ACGGCAGATGGCGTGGCGACTGGGGGTAGAGGTGCAGGGAGATCGCTCCT
GCCTCTTACAAAGTTGAGTAGCAAACTATTTGCAACCTTATTTTAGGCAG
CGCACAGGGGCCGACAGTAGCACTCCCACGAGCAGGGTGTTTATTTCCAA
CGGGCGTCTGTCTCCCTGTGGAACACAGCTACATGCGGAAGTGCTTCCGC
TGCGCAGCTGATGCCCAGCACGGGCAAGATCCATGTGGCTTCTTGCCCAC
GTCGAGCTGTGTTGCATGTAGACAACCGGCATTTGCCCCCGTTGTCGATG
TTGTTATCGTGATTGCTCGGGAAATCAAGTTTTTCGGTAGGTGGACATCC
GCATTTTCACACCAATCGTGGTAAACTCACCGCATCCATTTTTCGCCTCG
CGACGGCGATTGCCGCCAACGTATCTATCTTCACCCCACCCTCGCAACTT
GCGAGATGCGCGCACACGATATCTCGTCCCGGCGGCTGTCACTCCAGTTT
CAGTGATCGCGGGTTGCTGCTCCCTCAACCCGCTACGCTGCATTTCGGCT
AGTGGTAGTAGCAACGGCACGTGTGCCGTGTGCAGCAGTGGCATTTTCAA
AACCTCGGGTGCGTGCATCGAATCATTCTCACAGAGCCCTGCCAAAAATT
GCAAGCATTCTAGAGTCCAGCTCGTTTTTATGGCAGTAGTACGATAGTGG
CGCGAAAGAAAGCCGTAGCGGAGTTCCCAGCCGACGGTTGCGCGCCCTCC
GCATGCTTTTCGAAGAATACTCCAAGATATTAACATGTCACCACGTGAGA
TACCACCCCCCCCTGAAGGTCGAACGACCACAGCAAGAAGAGAGCCGCTG
CCGAAGGCGCGGCATTGGAAAGGAAATATCTAAACCAATCCAAAGCCCCA
TCGGTCGGTACTGCTGTCTGTCACCCTAACTGATGTGGAGAAATCTAGCT
GCAAAAAGTTGTCCAGAGGGGGTGAGGTAATCTTGTGCGGCTTAAGGTAT
ACCCAAACTGGTATATGCGACGTACGCGTAGGCAAGATCGGAGTCCTTGG
ATTGGTGATTGGGGAGGGAAAGAAGCCCAACGTACAAGCACACCGATCCG
CCGGCTGTGGGGCGCCCTGTACCCAAATGCCCGCTATACGTACCCGCTTG
TATGAGCTCGCTTTCCCGACCTTCTTCTATACCCACCCACATTCATCTGT
CGCATGAATACCGCTGTTCACCCTTCGCCCGCATCGGCGGGAAACCGCCC
TATCGCTTGTTTCCCGCAGGGCCCATCCCCGGACATGAAATTGACCTCCG
ACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCGAAGCCGTCGCGAATGGC
AGTCGCAGCGCCATCGCCGCCACCGCGGGCGCGTCAACACTCCCAAGGGC
CGGGTTTTCGTCCGCCGCCGGTGGCCACTACCGGGTACCGACCCCGACAG
AACAGACCCCGTCCCCTCGCAAAGGCATGCCCAACGGCGATGGCGGGGGC
GTGTTTGCGTTCGGGGTAGATTCGCCGGATAGCAGCGGCCCTGACAAGCG
CGACGATCACGGGTACTTCGAGGCTAGCGGAGGAGGATCGAAAAGGGCCG
GCGGCTGCGGTGGCAATCTCGGAACGGGATACGAGCAAGGACACAGTGTT
TCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCAGGCGGCGGAGAGAGCGA
CGACGAGGTGGAAGGAGGGGGGGTGGACGCCGGGTTTCGAGAAGAGCTGG
ACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCGAGCGGAAGCTGATGGTG
ACGGCGAGAGATGGGCTGGCGGCGGCCTGCGAGAGAGAGCGGAGCGCGGG
GCGCTTGCGGCTGGAGGCGCAGAGGAGGCACAGCAGCGAAGAGATCCTTC
ACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCGGAGGTGGCCAGGCTTCGG
AGGTGATTGCCGTGCTGCGCAGCAGCTGTGGGTGCTTCGTTTTTTTTAGT
AAACATAAATTCTGGACAATGTATATACCGGCTAAGTTAGGGCCTGCGTG
CCCCCTCCCTGACCTTGTTTCATACAATAGTATAGTAGCCTTACCTTCGT
TGTGTAGGCAGCTGGGCG back to topprotein sequence of Ec-00_000050.3 >Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=251bp
MNTAVHPSPASAGNRPIACFPQGPSPDMKLTSDSSGMLGRGGSEAVANGS
RSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGV
FAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVS
PARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVT
ARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR
* back to topmRNA from alignment at chr_00:36544..39463- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2920bp|location=Sequence derived from alignment at chr_00:36544..39463- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TAGGACGTGACAAGACATGCACTCGCAGGGTGTCGGCGACCAGCGCAGCA
TTCAGAGCCGAGAACAGACAGACACACATAGCGCGATGCTAGAGAAAGGA
GAGACAAGCCAGGGCTGCAAGGCGGGCTCGAGGGTTCGAACGGGAGCGGA
CGAGAAAGCGTGGCTCTCGCGGCAAGAACTTGCATCCAAGCGCTCGACAG
CAGATCCTCGCAGCAGCCAAGCTTTCCACCAACAACGCTCACGGCCAGCT
ACGGCAGATGGCGTGGCGACTGGGGGTAGAGGTGCAGGGAGATCGCTCCT
GCCTCTTACAAAGTTGAGTAGCAAACTATTTGCAACCTTATTTTAGGCAG
CGCACAGGGGCCGACAGTAGCACTCCCACGAGCAGGGTGTTTATTTCCAA
CGGGCGTCTGTCTCCCTGTGGAACACAGCTACATGCGGAAGTGCTTCCGC
TGCGCAGCTGATGCCCAGCACGGGCAAGATCCATGTGGCTTCTTGCCCAC
GTCGAGCTGTGTTGCATGTAGACAACCGGCATTTGCCCCCGTTGTCGATG
TTGTTATCGTGATTGCTCGGGAAATCAAGTTTTTCGGTAGGTGGACATCC
GCATTTTCACACCAATCGTGGTAAACTCACCGCATCCATTTTTCGCCTCG
CGACGGCGATTGCCGCCAACGTATCTATCTTCACCCCACCCTCGCAACTT
GCGAGATGCGCGCACACGATATCTCGTCCCGGCGGCTGTCACTCCAGTTT
CAGTGATCGCGGGTTGCTGCTCCCTCAACCCGCTACGCTGCATTTCGGCT
AGTGGTAGTAGCAACGGCACGTGTGCCGTGTGCAGCAGTGGCATTTTCAA
AACCTCGGGTGCGTGCATCGAATCATTCTCACAGAGCCCTGCCAAAAATT
GCAAGCATTCTAGAGTCCAGCTCGTTTTTATGGCAGTAGTACGATAGTGG
CGCGAAAGAAAGCCGTAGCGGAGTTCCCAGCCGACGGTTGCGCGCCCTCC
GCATGCTTTTCGAAGAATACTCCAAGATATTAACATGTCACCACGTGAGA
TACCACCCCCCCCTGAAGGTCGAACGACCACAGCAAGAAGAGAGCCGCTG
CCGAAGGCGCGGCATTGGAAAGGAAATATCTAAACCAATCCAAAGCCCCA
TCGGTCGGTACTGCTGTCTGTCACCCTAACTGATGTGGAGAAATCTAGCT
GCAAAAAGTTGTCCAGAGGGGGTGAGGTAATCTTGTGCGGCTTAAGGTAT
ACCCAAACTGGTATATGCGACGTACGCGTAGGCAAGATCGGAGTCCTTGG
ATTGGTGATTGGGGAGGGAAAGAAGCCCAACGTACAAGCACACCGATCCG
CCGGCTGTGGGGCGCCCTGTACCCAAATGCCCGCTATACGTACCCGCTTG
TATGAGCTCGCTTTCCCGACCTTCTTCTATACCCACCCACATTCATCTGT
CGCATGAATACCGCTGTTCACCCTTCGCCCGCATCGGCGGGAAACCGCCC
TATCGCTTGTTTCCCGCAGGGCCCATCCCCGGACATGAAATTGACCTCCG
ACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCGAAGCCGTCGCGAATGGC
AGTCGCAGCGCCATCGCCGCCACCGCGGGCGCGTCAACACTCCCAAGGGC
CGGGTTTTCGTCCGCCGCCGGTGGCCACTACCGGGTACCGACCCCGACAG
AACAGACCCCGTCCCCTCGCAAAGGCATGCCCAACGGCGATGGCGGGGGC
GTGTTTGCGTTCGGGGTAGATTCGCCGGATAGCAGCGGCCCTGACAAGCG
CGACGATCACGGGTACTTCGAGGCTAGCGGAGGAGGATCGAAAAGGGCCG
GCGGCTGCGGTGGCAATCTCGGAACGGGATACGAGCAAGGACACAGTGTT
TCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCAGGCGGCGGAGAGAGCGA
CGACGAGGTGGAAGGAGGGGGGGTGGACGCCGGGTTTCGAGAAGAGCTGG
ACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCGAGCGGAAGGTCTGTGTC
GATGTTGCTGCGAAGTTGTGAGGGTGGGAGTGATGGTTGGTGTTCTTTGC
ACCGTCTGAGTTTGCGGGCTTTGCGGGAGTTAGCCTTCCGGCGTGTAGAT
GTGTGTATGTGGCTCCTCTTGCTTGTGGTCTACCGTAGGTGGTTGTAGAT
GAAACGTCCCGTTGGGCCAGGTTTCAAAGCTGGATTACTCCCCAGCAAGG
GTGGTAGCGCCGAAAATTGCGACGTTGGAGCCTGTTCGTCGAGAGCTTTT
CGAAAACGTCTCGTTTGCTTTATGGGGAGCATCCTTTCCGTCGTGGAGTA
ATCGGTGCGGAGTGTGTAGTATCCTGTGTCTCCTACGGTACTCTGCTCAG
TATGTACAAGAGCTCGCACGTATGGCTTGTATGTACACTTGTGCTGTACG
TGTTTTTTTTCGTCTTTCGCCAGGCTTGTGAGAGCTTCAGCGCCGACGCT
TGTGTGATTAGATGGCCAGCGTATTGTCGCGGAAGACAGCGATGAAAATG
TCTGCTGTTCCCTCCAAATTGCGTCGCCCAACCAACTTGGCAGCTGATGG
TGACGGCGAGAGATGGGCTGGCGGCGGCCTGCGAGAGAGAGCGGAGCGCG
GGGCGCTTGCGGCTGGAGGCGCAGAGGAGGCACAGCAGCGAAGAGATCCT
TCACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCGGAGGTGGCCAGGCTTC
GGAGGTGATTGCCGTGCTGCGCAGCAGCTGTGGGTGCTTCGTTTTTTTTA
GTAAACATAAATTCTGGACAATGTATATACCGGCTAAGTTAGGGCCTGCG
TGCCCCCTCCCTGACCTTGTTTCATACAATAGTATAGTAGCCTTACCTTC
GTTGTGTAGGCAGCTGGGCG back to topCoding sequence (CDS) from alignment at chr_00:36544..39463- >Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=753bp|location=Sequence derived from alignment at chr_00:36544..39463- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAATACCGCTGTTCACCCTTCGCCCGCATCGGCGGGAAACCGCCCTAT
CGCTTGTTTCCCGCAGGGCCCATCCCCGGACATGAAATTGACCTCCGACA
GTTCTGGCATGCTGGGTCGTGGTGGAAGCGAAGCCGTCGCGAATGGCAGT
CGCAGCGCCATCGCCGCCACCGCGGGCGCGTCAACACTCCCAAGGGCCGG
GTTTTCGTCCGCCGCCGGTGGCCACTACCGGGTACCGACCCCGACAGAAC
AGACCCCGTCCCCTCGCAAAGGCATGCCCAACGGCGATGGCGGGGGCGTG
TTTGCGTTCGGGGTAGATTCGCCGGATAGCAGCGGCCCTGACAAGCGCGA
CGATCACGGGTACTTCGAGGCTAGCGGAGGAGGATCGAAAAGGGCCGGCG
GCTGCGGTGGCAATCTCGGAACGGGATACGAGCAAGGACACAGTGTTTCC
CCCGCTCGGAGGTGGCGCTCGGAGGATGCAGGCGGCGGAGAGAGCGACGA
CGAGGTGGAAGGAGGGGGGGTGGACGCCGGGTTTCGAGAAGAGCTGGACG
TGTTCGCGTCGTCTTTGCGAAGGGACTTCGAGCGGAAGCTGATGGTGACG
GCGAGAGATGGGCTGGCGGCGGCCTGCGAGAGAGAGCGGAGCGCGGGGCG
CTTGCGGCTGGAGGCGCAGAGGAGGCACAGCAGCGAAGAGATCCTTCACC
TCGAGGGTGAAGGGAGGCGGTTGAAGGCGGAGGTGGCCAGGCTTCGGAGG
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Synonyms
The feature 'Ec-00_000050.3' has the following synonyms
| Synonym |
|---|
| Esi1007_0001 |
| Esi_1007_0001 |
|