Ec-00_000930.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000930.1
Unique NameEc-00_000930.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length451
Homology
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: D8LE48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI)

HSP 1 Score: 600 bits (1547), Expect = 6.790e-212
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 1 
Query:    1 MTVIDNAVEAQTSAHKRTVVQVPGRSLAIFDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYENDGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAEDGDSGATSTTPAPLPILAPTPSMAPTLATSAPPSSRASPVTGTTSPSAPVEAELTSAPVEAEAGADTGSSDGNSGISATLEIFIGVASTVASAVILGAAKIIFSRRQPADAA 1350
            MTVIDNAVEAQTSAHKRTVVQVPGRSLAIFDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYENDGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAEDGDSGATSTTPAPLPILAPTPSMAPTLATSAPPSSRASPVTGTTSPSAPVEAELTSAPVEAEAGADTGSSDGNSGISATLEIFIGVASTVASAVILGAAKIIFSRRQPADAA
Sbjct:    1 MTVIDNAVEAQTSAHKRTVVQVPGRSLAIFDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYENDGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAEDGDSGATSTTPAPLPILAPTPSMAPTLATSAPPSSRASPVTGTTSPSAPVEAELTSAPVEAEAGADTGSSDGNSGISATLEIFIGVASTVASAVILGAAKIIFSRRQPADAA 450
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 4.600e-59
Identity = 226/414 (54.59%), Postives = 256/414 (61.84%), Query Frame = 1 
Query:  121 LELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPS-NVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGE-PA--KDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAE----DGDSGATSTTPAPLPILAPTPSMAPTLATSAPPSSRASPVTGTTSPSAPVEAELTSAPVEAEAGADTGSSDGNSGISA-TLEIFIGVASTVASAVILGAAKIIFSRR 1332
            + + SIDVGDL+GDG PDV VAFQ +  + WF N DG G F+ GTDIDT   G  S +VK+AD+DGDGDLDV+ A K GDRVTWYEN DGE TFA+G+D+STTADGA  LA                      XXXXXXXXXXXXXXX  E  + PA  KDVVT              S+DG+H + N+ DGRI W+EN DG G+F EG D+  LDSAR VV VDLDNDGD+DL+AC+NVG         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLL E    DG S AT TT  P P     PS                P   TT P+A                 DTG SD +S     T E+ I V STVASA+ LG  KI++ RR
Sbjct:    1 MRIGSIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLDGLGEFSVGTDIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADDPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLEN-DGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIEIDDDDGGSDATGTTATPAPXXXXXPS----------------PDDVTTDPAA-----------------DTGDSDNDSAEDLWTNEMLIAVVSTVASAMFLGLVKILWDRR 380
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.470e-53
Identity = 133/237 (56.12%), Postives = 154/237 (64.98%), Query Frame = 1 
Query:  133 SIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPS-NVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGE-PA--KDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 828
            SIDVGDL+GDG PDV VAFQ +  + WF N  G G F+ G DIDT   G  S +VK+AD+DGDGDLDV+ A K GDRVTWYEN DGE TFA+G+D+STTADGA  LA                      XXXXXXXXXXXXXXX     + PA  KDVVT              S+DG+H + ++ DGRI W+EN DG G+F EG D+  LDSAR VV VDLDNDGD+DLVACD VG
Sbjct:  115 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADDPAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVG 350
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: D7FHI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.550e-52
Identity = 144/235 (61.28%), Postives = 163/235 (69.36%), Query Frame = 1 
Query:  133 SIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSN-VKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXX-SYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 828
            SIDVGDLDGDG PDV VAFQ S  + WF N DG G F+ GTDIDT   G  SN VK+AD+DGDGDLDV+ A K GDRVTWYEN DGE TFA+G+D+STTADGA+ LA                      XXXXXXXXXXXXXXX             XXXXXXXXXXXXXX S+DG+H + ++ DGRI W+EN DG G+F EG+DI  L+SAR VV VDLDNDGD+DLV CD VG
Sbjct:  154 SIDVGDLDGDGSPDVVVAFQTSFQLTWFSNLDGLGEFSVGTDIDTYEDGDHSNFVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFDGNHTAGSFPDGRILWLEN-DGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVG 387
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 8.360e-34
Identity = 90/216 (41.67%), Postives = 108/216 (50.00%), Query Frame = 1 
Query:  133 SIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPV 777
            S+ V DL+GDGFPDV VAF  SD V W+RN+DG G F+ G DI TD  G+   VK ADVDGDGD D++S     DRVTWYEN DGEGTFA+GLD+S T+ GA  +A                                      ++  + A                     D    S +YYDGR+ W ENTDG GTF  G+DID L S    V V
Sbjct:  106 SVAVADLNGDGFPDVVVAFPYSDTVTWYRNSDGLGSFSLGVDIATDTDGAWV-VKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISATSSGA-DMAVAADIDGDEAVDIVVASFDDDRVTWFKNTDGKGAFALGVDLAQDANGATYVAAGDLDGDG------DLDVVSGSYYDGRVTWYENTDGAGTFAVGQDIDILPSVASAVAV 313
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: A0A1F3PTM3_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PTM3_9BACT)

HSP 1 Score: 105 bits (262), Expect = 1.630e-20
Identity = 80/246 (32.52%), Postives = 111/246 (45.12%), Query Frame = 1 
Query:   88 FDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSH--ASSNYYDGRIFWIENTDGEGTFGEGEDIDSL-DSARIVVPVDLDNDGDVDLVA 813
            F P KV+  S   + SI   DLDGDG  D+  A    D + W+ N DG G ++    I + A G+   V  AD+DGDGD+DV+SA K  D++ W+EN DG GTF+    +ST A+    +                                              ++VVT                DG     S++YYD +I W EN DG GTFG  + I +L D A  + P DLD DGD+D+++
Sbjct:  435 FGPQKVITTSVNGVCSIYCTDLDGDGDIDILSASSDDDKIAWYENIDGNGSYSIQQVITSVANGAQC-VSSADLDGDGDMDVLSASKDDDKIAWFENIDGYGTFSFQQIISTAANSPRSVNCADLDGDGDLDVISASYQDDKIAWYENTDGFGTFG---------TQNVVTTLADAAHSINSADLDGDGDIDLLSASYYDDKIAWYENVDGNGTFGVQQIISTLADYAVSIFPADLDGDGDMDVLS 670
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT)

HSP 1 Score: 100 bits (249), Expect = 6.810e-19
Identity = 75/235 (31.91%), Postives = 105/235 (44.68%), Query Frame = 1 
Query:  130 RSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGS----HASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDS--ARIVVPVDLDNDGDVDLVA 813
             SI   D+DGDG  DV  A    D + W+ N DG G F T   I TDA G+  +V  AD+DGDGD+DV+SA  T D++ WYEN DG G+F I   ++T AD A  +                                              + +++                DG      AS+  Y+ +I W ENTDG GTFG  + I + D+  A  +   D+D DGD+D+++
Sbjct:  347 ESICSADIDGDGDMDVLSASFHDDKIAWYENTDGSGTFGTQQSITTDANGA-RDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITTVADNARSVYSADLDGDGDMDVLSASEDDDKIAWYENTDGNGTFG---------VQQIISTTAYYALSVYSADLDSDGDMDVLSASATEYEDKICWYENTDGNGTFGT-QQIITTDAYYAVSIYSADIDGDGDMDVLS 570
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: UPI00165541A0 (T9SS type A sorting domain-containing protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI00165541A0)

HSP 1 Score: 99.4 bits (246), Expect = 2.030e-18
Identity = 72/246 (29.27%), Postives = 106/246 (43.09%), Query Frame = 1 
Query:   88 FDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSH--ASSNYYDGRIFWIENTDGEGTFGEGEDI-DSLDSARIVVPVDLDNDGDVDLVA 813
            F P +++        S+   DLDGDG  D+   +     VVWF N DGQG F     I  +A  + + V   D+DGDGD+D++SA    D++ WYEN DG+G F     +ST AD A  +                                             A+ ++T                DG +   S++  D +I W ENT+G+G FG  + I  + + A  V   D+DNDGD+D++A
Sbjct:  484 FGPQQIITTGASNAESVYAADLDGDGDMDIVSTYSTISSVVWFENTDGQGNFGARQTITYNADFAQA-VYAEDIDGDGDMDILSASSGDDKIAWYENTDGQGNFGTQQVISTNADSASSVYAIDLDGDGDIDVLSASRADDKIAWYENTDGQGTFG---------AQQIITTDADFATSVYAIDMDNDGDNDVISASSTDDKIAWYENTNGQGGFGVQQIIVTNANGASSVYAADVDNDGDIDILA 719
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: A0A345H4F5_9FLAO (Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella n=1 Tax=Kordia sp. SMS9 TaxID=2282170 RepID=A0A345H4F5_9FLAO)

HSP 1 Score: 97.1 bits (240), Expect = 1.150e-17
Identity = 72/244 (29.51%), Postives = 109/244 (44.67%), Query Frame = 1 
Query:   88 FDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDS-LDSARIVVPVDLDNDGDVDLVA 813
            F   +++  +   +RS+   DLDGDG  D+  A    + + W+ N DGQG F     I T+A G+ + V   D+DGDGD+DV+SA  + D++ WYEN DG+GTF+    +S  AD A  +                                          G+   DV+                      S++Y D +I W ENTDG+GTF   + I + + +   V   D+D DGD+D++A
Sbjct:  432 FGSQQIITTNADRVRSVYASDLDGDGDLDLLSASNNDNKIAWYENTDGQGSFGPQQIITTNANGA-NKVFAIDLDGDGDMDVLSASGSDDKIAWYENTDGQGTFSAEQIISANADNAQSVYPADLD------------------------------------GDGDMDVL----------------------SASYVDDKIAWYENTDGQGTFSAEQIISTNITNPSSVYAADVDGDGDMDVLA 616
[Close]
BLAST of Ec-00_000930.1 vs. uniprot
Match: A0A1F3PPP5_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PPP5_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-17
Identity = 73/248 (29.44%), Postives = 110/248 (44.35%), Query Frame = 1 
Query:   88 FDPLKVVYASPLELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPAKDVVTXXXXXXXXXXXXXXSYDGS----HASSNYYDGRIFWIENTDGEGTFGEGEDIDSLD-SARIVVPVDLDNDGDVDLVA 813
            F   K++  S     S+   D+DGDG  DV  +  + + + W+ N DG G F+T T +  +   +P +V  AD+DGD D+DV+SA    D++ WYEN DG GTF   + +ST A+GA  +                                       ++R      V+T                DG      AS+  YD R+ W ENTDG G+FG  + I  +   +  V   D+DND D+D+++
Sbjct:   63 FGVQKIITLSATGANSVCSVDIDGDGDFDVLSSSSMDNKITWYENTDGFGTFST-THVICNTVNNPQSVFFADIDGDSDMDVLSASAGDDKIAWYENTDGAGTFGPQIIISTNANGATSV---YSADIDLDGDMDVLSASVADNKIAWYENTNGTGTFGIQR------VITTSAYTAYSVCCADIDGDGDLDVLSASATTYDNRVAWYENTDGAGSFGPQQIISVIAYGSNSVYYADIDNDDDIDVLS 300
The following BLAST results are available for this feature:
BLAST of Ec-00_000930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE48_ECTSI6.790e-212100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHI6_ECTSI4.600e-5954.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHI7_ECTSI1.470e-5356.12N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D7FHI8_ECTSI2.550e-5261.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K481_9PHAE8.360e-3441.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1F3PTM3_9BACT1.630e-2032.52Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
A0A1F3PQL1_9BACT6.810e-1931.91Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
UPI00165541A02.030e-1829.27T9SS type A sorting domain-containing protein n=1 ... [more]
A0A345H4F5_9FLAO1.150e-1729.51Repeat domain in Vibrio, Colwellia, Bradyrhizobium... [more]
A0A1F3PPP5_9BACT1.270e-1729.44Por_Secre_tail domain-containing protein n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1213059..1218803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score602.4
Seed ortholog evalue1.7e-169
Seed eggNOG ortholog2880.D8LE48
Length1353
Hectar predicted targeting categoryother localisation
Gene idEc-00_000930.1
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs29QRV@1,2RX97@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000930Ec-00_000930Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1213059..1218803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000930.1Ec-00_000930.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1213059..1218803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000930.1.7Ec-00_000930.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1213059..1213201 -
Ec-00_000930.1.6Ec-00_000930.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1214028..1214090 -
Ec-00_000930.1.5Ec-00_000930.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1214781..1215012 -
Ec-00_000930.1.4Ec-00_000930.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1215756..1216086 -
Ec-00_000930.1.3Ec-00_000930.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1217524..1217752 -
Ec-00_000930.1.2Ec-00_000930.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1218361..1218584 -
Ec-00_000930.1.1Ec-00_000930.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1218673..1218803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000930.1CDS:Ec-00_000930.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1213059..1213201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000930.1 ID=Ec-00_000930.1|Name=Ec-00_000930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=451bp
MTVIDNAVEAQTSAHKRTVVQVPGRSLAIFDPLKVVYASPLELRSIDVGD
LDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKL
ADVDGDGDLDVVSAWKTGDRVTWYENDGEGTFAIGLDLSTTADGAYGLAL
ADLDGDDDLDVVSASVWDGLAWYENSDGNGVFSFGISLERGEPAKDVVTA
DLDGDGDLDIIAASYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSL
DSARIVVPVDLDNDGDVDLVACDNVGGRVMWYENTNGQGNFSAAIDIAID
SGVNMVIAVDLDGDDDFDLLTASRDSGRVIWYENLLAEDGDSGATSTTPA
PLPILAPTPSMAPTLATSAPPSSRASPVTGTTSPSAPVEAELTSAPVEAE
AGADTGSSDGNSGISATLEIFIGVASTVASAVILGAAKIIFSRRQPADAA
*
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spliced messenger RNA

>Ec-00_000930.1 ID=Ec-00_000930.1|Name=Ec-00_000930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1353bp|location=Sequence derived from alignment at chr_00:1213059..1218803- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGTCATTGACAATGCAGTGGAAGCCCAGACTTCTGCCCACAAAAG
AACGGTGGTGCAGGTTCCCGGGAGAAGTTTAGCTATCTTCGACCCTCTCA
AGGTTGTGTACGCCTCGCCTCTCGAGCTACGGTCGATTGACGTCGGCGAC
CTGGATGGCGACGGGTTCCCTGATGTTGCAGTAGCATTTCAACTCTCCGA
TCATGTGGTGTGGTTTCGGAATGCAGACGGTCAGGGTGGATTTACGACCG
GCACTGATATCGATACGGACGCGGGAGGTTCGCCTTCAAATGTCAAGCTA
GCCGACGTCGACGGGGATGGGGACTTGGACGTAGTATCCGCATGGAAGAC
CGGCGATCGAGTTACATGGTATGAAAACGACGGAGAAGGAACGTTCGCGA
TCGGCCTTGATCTTTCGACAACGGCCGATGGTGCTTACGGGCTGGCGCTG
GCGGACCTAGATGGAGACGACGATCTTGACGTCGTGTCAGCATCCGTTTG
GGATGGGTTGGCGTGGTACGAGAACTCGGACGGCAACGGGGTATTCTCGT
TCGGCATCAGCTTGGAACGTGGGGAACCTGCCAAGGACGTCGTAACGGCG
GATCTCGACGGGGACGGCGATCTCGATATCATCGCTGCATCCTACGACGG
CAGTCACGCCAGTAGTAATTACTACGACGGCCGAATATTCTGGATCGAAA
ACACCGACGGCGAAGGAACGTTTGGAGAAGGCGAAGACATCGACTCGCTG
GACTCCGCGAGGATTGTGGTGCCTGTGGATCTCGACAATGACGGGGATGT
TGATCTGGTGGCCTGCGACAACGTCGGGGGGCGGGTAATGTGGTATGAAA
ACACAAACGGGCAGGGGAACTTTTCGGCCGCCATCGACATCGCCATCGAC
TCCGGGGTAAACATGGTGATTGCGGTTGACCTCGATGGGGACGATGACTT
CGATTTATTGACCGCTAGTCGGGATAGCGGCCGCGTGATCTGGTACGAAA
ACCTGCTCGCAGAAGACGGTGACAGCGGAGCAACATCAACAACGCCAGCG
CCGCTCCCCATCCTTGCTCCAACACCGTCGATGGCCCCGACCCTGGCCAC
GAGTGCCCCGCCCTCATCACGAGCATCACCAGTCACCGGCACCACGTCTC
CTTCTGCACCGGTCGAAGCGGAACTAACTTCTGCACCGGTCGAAGCAGAA
GCAGGTGCAGACACCGGCAGCAGCGATGGCAACAGCGGCATTAGCGCCAC
ACTCGAGATATTTATCGGGGTCGCGTCGACGGTTGCAAGCGCAGTGATTT
TGGGAGCCGCCAAGATTATATTTTCGAGAAGACAACCGGCAGACGCCGCT
TAA
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protein sequence of Ec-00_000930.1

>Ec-00_000930.1 ID=Ec-00_000930.1|Name=Ec-00_000930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=451bp
MTVIDNAVEAQTSAHKRTVVQVPGRSLAIFDPLKVVYASPLELRSIDVGD
LDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSNVKL
ADVDGDGDLDVVSAWKTGDRVTWYENDGEGTFAIGLDLSTTADGAYGLAL
ADLDGDDDLDVVSASVWDGLAWYENSDGNGVFSFGISLERGEPAKDVVTA
DLDGDGDLDIIAASYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSL
DSARIVVPVDLDNDGDVDLVACDNVGGRVMWYENTNGQGNFSAAIDIAID
SGVNMVIAVDLDGDDDFDLLTASRDSGRVIWYENLLAEDGDSGATSTTPA
PLPILAPTPSMAPTLATSAPPSSRASPVTGTTSPSAPVEAELTSAPVEAE
AGADTGSSDGNSGISATLEIFIGVASTVASAVILGAAKIIFSRRQPADAA
*
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mRNA from alignment at chr_00:1213059..1218803-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000930.1 ID=Ec-00_000930.1|Name=Ec-00_000930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5745bp|location=Sequence derived from alignment at chr_00:1213059..1218803- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAGTCATTGACAATGCAGTGGAAGCCCAGACTTCTGCCCACAAAAG
AACGGTGGTGCAGGTTCCCGGGAGAAGTTTAGCTATCTTCGACCCTCTCA
AGGTTGTGTACGCCTCGCCTCTCGAGCTACGGTGAGTTGTCCGTTGTTTC
CCGGGAGGGGAAAAAGGATCGACCGAGGCGTCGATCTCCCGTGCTTTCCC
TCGCGCTTGCCCAACGCAGGTCGATTGACGTCGGCGACCTGGATGGCGAC
GGGTTCCCTGATGTTGCAGTAGCATTTCAACTCTCCGATCATGTGGTGTG
GTTTCGGAATGCAGACGGTCAGGGTGGATTTACGACCGGCACTGATATCG
ATACGGACGCGGGAGGTTCGCCTTCAAATGTCAAGCTAGCCGACGTCGAC
GGGGATGGGGACTTGGACGTAGTATCCGCATGGAAGACCGGCGGTAAGTG
CGTCTGCTGCGCATATTGAAGGCGTTTCATAGACAACGAATTTCGTAGTC
TCCGTTGTACCGTCAGTCACGCATAAAACCTTCGTTGTTCATCGTTCATT
TCTTGTCTTTGCTAGCACTATAGCTCATCTTCGATGTCTCGCCTGTTGTA
CAGGCAGCCAAGACGCAATAGACTTGCCCGAGCCCAACCCTAAGTTCCAC
CAGCTTGCAAAACAACCGGAAGAGGTGGGGTGGGGGACTCGTGGCGTCAA
CAACTGACGAAAGACTCGATTCAAAGGAATAGAAGAAACAGAGAAATCGT
TTCAACAACAGAAGTTTCGGCGTTGATGCTACACATGCGCGCGTGGGCTC
CGGAAGAATAACGACGCGGAGGATGGCCAACAAGGCATGGCGAGCACACG
GACTTCCGTTAGCCAAAGAAAACGCCCCGCCACGATGGCGTCTGAATCTC
ATCTGGTCCTTCCTCTTGTCTGTGGTGTCGATTGGCTTTCGTTCATTCAT
TGGGATTCCATGCCATTAAGGCACCGTGTCATCGCCGTTGCCGTTCCCTG
AGTACAATGGAAAAGTCCCTTCTCCGGAACCATACGTGAAATACGCCGCA
GATCGAGTTACATGGTATGAAAACGACGGAGAAGGAACGTTCGCGATCGG
CCTTGATCTTTCGACAACGGCCGATGGTGCTTACGGGCTGGCGCTGGCGG
ACCTAGATGGAGACGACGATCTTGACGTCGTGTCAGCATCCGTTTGGGAT
GGGTTGGCGTGGTACGAGAACTCGGACGGCAACGGGGTATTCTCGTTCGG
CATCAGCTTGGAACGTGGGGAACCTGCCAAGTGAGGTTACTCTGCGGTGT
AGCTGATCCACGATAGAAAAGGCAATATGTTTTAGACGTCTCGTTGATGA
TGTATCTTCCGTGATTTGTCTGTTTCTCAAGCATTCCCGGAGCCGGAACG
AAAAAAGGACCCTTTATATTTTTTATGAACGACCAATAAAACACGAAAAA
TTTCACGGAAGAGTGCTTTCTTGCAAATATATGGAGGCGTTTTCCCCCGA
TCCGTGAAAGTAGCGAGCAGTTTTTTTTGGGGGCTTGCTGCTTTCACGGA
TCCGGGGAATTTGACACAAGGGTCGGGCAGGGTCGGGCAGGCGCACCGCG
GGCGGGCGCTGTAACATCACTGAGAACGCTCGCAAGACCTGCTAGACTCA
CGTCCAGGTCTGTTGTGGAGACGGACAAGCGGCAGAAGTCGCGTTCAGTC
CGTTCTTGGTCCAAAACGAGACACTTCGTGGTGCTCGCGTCTTCAACTGC
TGCTGTTGGTGCTGGAGATATTTTGTCAATCAAACATAGCAAACACGGAA
ACAGCAGAACGAGTACAGCAGCAGCACCAAGACCTCCAACGCGTTGATTC
CTTCGGTTCGGCTGTCTATATGATACTCACTCCCGGCGCTGTGCTGCTTC
GTGGGTATTGGGGGCTTGGATGTGCTGCTCAATAAGGTGTGTGAGAGACG
TGTGCCACCTCACCAAAATGCCGTTGGAAAAAATGCGGCGAGATGATGTG
TGTTTGGTCGGACACATCAACATCAATCCACGGCACCACGCAGCAGTAGA
GCAATAGGGCCTCCGACACGCTAATTCGTTCGGATTGGCCATCTATATGA
TGCTGCTCTTTAGTGAGCAAAACCAAGTCAACCTGTTGTGTGCCGAGCGT
GTATTCAGGGAAGGAAACGTACTTTTGCGATGACATCACGAATAGACTAG
AACAAGAGAAAAATAATTGGGGTTTCTTTTCACCGTTCCGTGAAAAAAAT
CGTGAATTTTCCGTTGCGTTAGCAATAGGCCTAAAGTAGAAACACAATGT
CTTCTCGTGAGATGGCCATTGATGGTTCCGTAGGACTGTTCAACATCTGT
AAACAGTGCACCACGGAGCATTTCCCAAGACTTCAGCGCCTATTGTTCGG
CGACCTCTCGTACACGGGGCAGTCTATGGCATTGTCGGGATACTGCCCTA
GACACCCCTCTCCACGCCCTTGTTCTTGTCGTACGCCCGGCGTTCGTACA
TTGCTTGGGCAATGCAGGCGCATCGCGAAAGCCATTTGCTATTCACATTG
CGTGAAACTCTTGGTGTGTATGTTATTCCCTCCTTTGATTATTTTCTGCC
CCCTAGAGTTTTGTCCACCCCTACACCTGTTTGCTCACTCAAGCATGACG
TCGGGGCCCGCGTCCAAGCCATGTTTTCGCGATTTCGTCGGATGCCGTAA
TATTATTACTGCAACAGGGACGTCGTAACGGCGGATCTCGACGGGGACGG
CGATCTCGATATCATCGCTGCATCCTACGACGGCAGTCACGCCAGTAGTA
ATTACTACGACGGCCGAATATTCTGGATCGAAAACACCGACGGCGAAGGA
ACGTTTGGAGAAGGCGAAGACATCGACTCGCTGGACTCCGCGAGGATTGT
GGTGCCTGTGGATCTCGACAATGACGGGGATGTTGATCTGGTGGCCTGCG
ACAACGTCGGGGGGCGGGTAATGTGGTATGAAAACACAAACGGGCAGGGG
AACTTTTCGGCCGCCATCGACATCGCCATCGACTCCGGGGTAAACATGGT
GAGTCGGGACAACGCCTGCCTCAACGCCCAAGGGCGCTCTCTCGATCCTA
AACGGAACTAGAGCTTACTCGACGATGCCTGTATAGTGATACGGCCCTTT
CTCGGCGCGGCGGTGCATCGCGGCGACGACTTGTTGCCGCTGTGTATAGT
GGCTCCGTATTTCCACGACGAGTTTAACCCTCCCCGGAAAACGACAGCAG
TACTGCTGTGGTGACCAGCGTAGGGGGCTCCTGGGCAGACTGGAGAGCTT
GAAAACGATAGCTCGGTATATGTGGTTCGTAGAAAAGTATGTAGCTGATG
GACCCAGGTTCAAACCCCGGGGTCTGGCAACGTTTCTCGTTTTCAATTTT
TGTGCGTTTCTCTCGGCATCGACGGGGTGCTGACGAGGAGTTACGGTCAA
AGGTAGCGGAGAGTATGCGGTTTGACAGTACCCAAACGTTCGTGCTTGCT
GCTGTCCAAGTGCTATCAAACCCTTCAAAACGGTCGAATATGAGCGGCCA
CAACAAAGGCGTACGGGACGTCTTACGATGGCGTTTTTGTTGCCATGGCA
TATTGCATGGATGCTTTCCACTATCTCCATATTCAACGGCGACCCACCGT
TAGGCATGAAACGAGAACCGCGAACTTTGCGCCGGGAGGGGGAGCGTGGG
CGGGATGATCCATCGTTGCTGGCATTTGGTTTTCATTCTCCCCTTCTCGG
TCTCCATGGACGCCTCATTCCCACACCAACACTTGTTCCAGGTGATTGCG
GTTGACCTCGATGGGGACGATGACTTCGATTTATTGACCGCTAGTCGGGA
TAGCGGCCGCGTGATCTGGTACGAAAACCTGCTCGCAGAAGACGGTGACA
GCGGAGCAACATCAACAACGCCAGCGCCGCTCCCCATCCTTGCTCCAACA
CCGTCGATGGCCCCGACCCTGGCCACGAGTGCCCCGCCCTCATCACGAGC
ATCACCAGTCACCGGCACCACGTGTGAGGCAAAATCAAAACTAGGGAATC
GGGGCACAAGAAACGATTGCTGGAAAACAGCTGTTAGTGGAACCGGTGGA
TAGTATTACAATATAATGATCGCCTTCACGTCACACTCGTCTCTCCCCCC
CCCCTCCCTTCTCCGCACCAATCTTCACCCCGAGTGGAATCTAAACCTTG
CGACGACATCACTAACCGACACACCTTCCCCGTGCAGTACTCCTGCATCG
GTCGAAGCAGAAGCAGTTGTAGGCAGACCTACTACGACTGGGTGTGAAAG
ACTAAATCTTGGGCATGTTTCTTTCCGTGAGTTGATTCCCGATCGAGTTC
AGGGCAAACCTCACCGTCTATTCCCACCTTTGATAACGTTAAGCATCACG
GACCGCCACCATCGGTGAAAACGTGCGAAATTCAAAGTGAATCGCCTCTG
TCGACATTTCGACATGCGTATGCTGTAGCATGGCCTACACAACAAGTCGT
GTTCTTATATCGAATGATTCGTGTTCTTTTCGACTGGGCAATATCGCTCA
GCCGTTGTTAGCCACCCGGCAACGGAAAACAAGCGCTGGTTCGATGGAAA
CAAACTTAGGGGATCGAGAGAGGGCGAGACGGTATTGACAACAGTGATCC
ACACTACGTCACACTCCTTCCTTCCCTCCCTGCCTTCTCGAAATTTGCGA
CGGCATCGTGCAGCTCCTTCTGCACCGGTCGAAGCGGAACTAACTTCTGC
ACCGGTCGAAGCAGAAGCAGGTGCAGGTAGGACCGCTGGACGCGAAAGGA
TAGACTTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATG
TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATATT
CGTGAGTTGGCTGCCTGCGGAGGTAAAGACTAACGCCACTGTCTATTCCT
CATGTTGATTGCGGGGGTTGAAACCCCGTTTTCATTTGAGCAACTAGGGC
CGCCCTCGTCGGTGATACATGTGAAATTCGGATCAAGTCGCTACCGCTGA
CGTTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGTATACTAAAATCAAGAAA
AAACAAGATCCAAAATATTTTATTTTTTGAACTTTTCTCGCAATTACGGC
ACCATAGGACGTAGGTGTCGTTTTCACTTTTCTGTGGGCACCCTTGGTGC
TCCTATAGCAAATCACGTGCGATCAAAGTGCCAAGCATTCGTTAAATATG
ATCAAGGTTTGTAACAACATGATCTCTTGGACCACTCATCAACGCCTGCT
CTGCAAACAATCCCCCGAAATGAATCTGTGTGTCGTTTCCTCTCTTTTGA
AGACACCGGCAGCAGCGATGGCAACAGCGGCATTAGCGCCACACTCGAGA
TATTTATCGGGGTCGCGTCGACGGTTGCAAGCGCAGTGATTTTGGGAGCC
GCCAAGATTATATTTTCGAGAAGACAACCGGCAGACGCCGCTTAA
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Coding sequence (CDS) from alignment at chr_00:1213059..1218803-

>Ec-00_000930.1 ID=Ec-00_000930.1|Name=Ec-00_000930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1353bp|location=Sequence derived from alignment at chr_00:1213059..1218803- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAGTCATTGACAATGCAGTGGAAGCCCAGACTTCTGCCCACAAAAG
AACGGTGGTGCAGGTTCCCGGGAGAAGTTTAGCTATCTTCGACCCTCTCA
AGGTTGTGTACGCCTCGCCTCTCGAGCTACGGTCGATTGACGTCGGCGAC
CTGGATGGCGACGGGTTCCCTGATGTTGCAGTAGCATTTCAACTCTCCGA
TCATGTGGTGTGGTTTCGGAATGCAGACGGTCAGGGTGGATTTACGACCG
GCACTGATATCGATACGGACGCGGGAGGTTCGCCTTCAAATGTCAAGCTA
GCCGACGTCGACGGGGATGGGGACTTGGACGTAGTATCCGCATGGAAGAC
CGGCGATCGAGTTACATGGTATGAAAACGACGGAGAAGGAACGTTCGCGA
TCGGCCTTGATCTTTCGACAACGGCCGATGGTGCTTACGGGCTGGCGCTG
GCGGACCTAGATGGAGACGACGATCTTGACGTCGTGTCAGCATCCGTTTG
GGATGGGTTGGCGTGGTACGAGAACTCGGACGGCAACGGGGTATTCTCGT
TCGGCATCAGCTTGGAACGTGGGGAACCTGCCAAGGACGTCGTAACGGCG
GATCTCGACGGGGACGGCGATCTCGATATCATCGCTGCATCCTACGACGG
CAGTCACGCCAGTAGTAATTACTACGACGGCCGAATATTCTGGATCGAAA
ACACCGACGGCGAAGGAACGTTTGGAGAAGGCGAAGACATCGACTCGCTG
GACTCCGCGAGGATTGTGGTGCCTGTGGATCTCGACAATGACGGGGATGT
TGATCTGGTGGCCTGCGACAACGTCGGGGGGCGGGTAATGTGGTATGAAA
ACACAAACGGGCAGGGGAACTTTTCGGCCGCCATCGACATCGCCATCGAC
TCCGGGGTAAACATGGTGATTGCGGTTGACCTCGATGGGGACGATGACTT
CGATTTATTGACCGCTAGTCGGGATAGCGGCCGCGTGATCTGGTACGAAA
ACCTGCTCGCAGAAGACGGTGACAGCGGAGCAACATCAACAACGCCAGCG
CCGCTCCCCATCCTTGCTCCAACACCGTCGATGGCCCCGACCCTGGCCAC
GAGTGCCCCGCCCTCATCACGAGCATCACCAGTCACCGGCACCACGTCTC
CTTCTGCACCGGTCGAAGCGGAACTAACTTCTGCACCGGTCGAAGCAGAA
GCAGGTGCAGACACCGGCAGCAGCGATGGCAACAGCGGCATTAGCGCCAC
ACTCGAGATATTTATCGGGGTCGCGTCGACGGTTGCAAGCGCAGTGATTT
TGGGAGCCGCCAAGATTATATTTTCGAGAAGACAACCGGCAGACGCCGCT
TAA
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Synonyms
The feature 'Ec-00_000930.1' has the following synonyms
Synonym
Esi0013_0004
Esi_0013_0004