Ec-00_000910.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000910.1
Unique NameEc-00_000910.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length170
Homology
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BLAST of Ec-00_000910.1 vs. uniprot
Match: D7FJ81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ81_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 4.290e-92
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 
Query:    1 MASRGSGSSTRRATPNAIEAGWIARTGGGVTRFSRSKXXXXXXXXXXXXXXXQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGAXXXXXXXXXSEHLTQDFWYVWRDHTLAPCCCLRLRFWCCPRRC 507
            MASRGSGSSTRRATPNAIEAGWIARTGGGVTRFSRSKXXXXXXXXXXXXXXXQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGAXXXXXXXXXSEHLTQDFWYVWRDHTLAPCCCLRLRFWCCPRRC
Sbjct:    1 MASRGSGSSTRRATPNAIEAGWIARTGGGVTRFSRSKXXXXXXXXXXXXXXXQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGAXXXXXXXXXSEHLTQDFWYVWRDHTLAPCCCLRLRFWCCPRRC 169
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BLAST of Ec-00_000910.1 vs. uniprot
Match: D7G0S0_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 5.890e-29
Identity = 88/99 (88.89%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:   82 GGVTRFSRSKXXXXXXXXXXXXXXXQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGA 378
            GGVTRFSRSKXXXXXXXXXXXXXXX  EEP VDDDVEADLSSVRNVSAGSDPSARASKSV       RQSTGAAPQGSSSQTVPAPSTRR+SAPPVTGA
Sbjct:   19 GGVTRFSRSKXXXXXXXXXXXXXXXXXEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVG------RQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGA 111
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BLAST of Ec-00_000910.1 vs. uniprot
Match: D7FVS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS2_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.380e-5
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  160 AEEPFVDDDVEADLSSVRNVSAGSDPSARASKSV 261
            AEEP VDDDVE DLSSVRNVS GSDP ARAS+SV
Sbjct:   10 AEEPDVDDDVETDLSSVRNVSGGSDPPARASESV 43
The following BLAST results are available for this feature:
BLAST of Ec-00_000910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJ81_ECTSI4.290e-92100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S0_ECTSI5.890e-2988.89Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FVS2_ECTSI3.380e-585.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1170044..1171488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length510
Hectar predicted targeting categoryother localisation
Gene idEc-00_000910.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000910Ec-00_000910Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1170044..1171488 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000910.1.1Ec-00_000910.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1170044..1170202 +
Ec-00_000910.1.2Ec-00_000910.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1171138..1171488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000910.1CDS:Ec-00_000910.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1170044..1170202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000910.1Ec-00_000910.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1170044..1171488 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000910.1 ID=Ec-00_000910.1|Name=Ec-00_000910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=170bp
MASRGSGSSTRRATPNAIEAGWIARTGGGVTRFSRSKSKGKGKKDASPPP
QAQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGA
APQGSSSQTVPAPSTRRQSAPPVTGAGSGSGGGSSSEHLTQDFWYVWRDH
TLAPCCCLRLRFWCCPRRC*
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spliced messenger RNA

>Ec-00_000910.1 ID=Ec-00_000910.1|Name=Ec-00_000910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=510bp|location=Sequence derived from alignment at chr_00:1170044..1171488+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCAAGAGGGTCGGGTTCATCGACCCGTAGGGCTACCCCTAATGC
CATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGGTAACCCGCTTCT
CCCGCTCCAAGTCTAAAGGAAAGGGGAAGAAGGATGCTTCGCCACCGCCG
CAGGCTCAAGCGGAGGAGCCCTTTGTCGATGATGATGTTGAGGCGGACCT
GTCTTCCGTCAGGAACGTCTCCGCAGGCTCGGATCCGTCGGCCAGGGCGT
CGAAGAGTGTTGTTTCCGGCGGTGGTGCTTGTCGGCAGTCGACGGGGGCT
GCCCCGCAGGGTTCGTCTTCGCAGACGGTACCTGCCCCGTCCACACGTCG
CCAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGGCGGCA
GCAGCAGTGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCAC
ACCCTCGCGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCG
TCGCTGCTGA
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protein sequence of Ec-00_000910.1

>Ec-00_000910.1 ID=Ec-00_000910.1|Name=Ec-00_000910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=170bp
MASRGSGSSTRRATPNAIEAGWIARTGGGVTRFSRSKSKGKGKKDASPPP
QAQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGA
APQGSSSQTVPAPSTRRQSAPPVTGAGSGSGGGSSSEHLTQDFWYVWRDH
TLAPCCCLRLRFWCCPRRC*
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mRNA from alignment at chr_00:1170044..1171488+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000910.1 ID=Ec-00_000910.1|Name=Ec-00_000910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1445bp|location=Sequence derived from alignment at chr_00:1170044..1171488+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCAAGAGGGTCGGGTTCATCGACCCGTAGGGCTACCCCTAATGC
CATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGGTAACCCGCTTCT
CCCGCTCCAAGTCTAAAGGAAAGGGGAAGAAGGATGCTTCGCCACCGCCG
CAGGCTCAAGTAAGTTCGCGCGATACCGATGGGACCTGTCATGGGGTTAG
TCTGTTGAGGAGGCTGAGCGATATCTTGGTCCATTGTCGGATTTGATGGA
TTCACCAGTGAGCGGTCACCACCGAGGCCGGCGCCTGCGCAAGCTCAGGT
CCAAGATGGCCGTTGAAGACGAAGCACCCAACGTGCGTAAATGCGCGGCT
ACCTTTTTGTTTTGTTTTTTAGTTTTCGTACCATCATTCCATGGCCTTGT
CAAATAGCTGGACCGTCCCTATGGTGTCATGTACCCGCACCGATAGGTAC
GGCTGTCCTTTCTTTTACAGTTGCGACCGCTCTTCCTTTTAGTCGTGAAC
TCCCTCTCTACGTGGCAGTTGAAAGGACGAAGTGTCGAGAGCATGACGCA
CGTATGCATGATGGCCTGCACATAATTTCCAAACACCAACCATCTACAAG
CACAGCATTTGGAACTTACATGCACCTGTGTCTGGTTCGCTCTGGACCCA
ATTTGATGCAGATGAACTGCAGAGGGGCATGCGTACTTTCCTACAGGCTG
TTGCGGAGTTTGAGCTAGGTTCGGGGCTCTTGCCTCGATGGATGTGCTGG
ATGAGGAAACCTGTAGCTTTCACCAACGACTGCTTTTTTCAAGGCAGCAC
AACATCTCGCGTTGAATTTAAAGTAAAAAGTAGAGCATAAAGGAATAATT
AATAAAGACTTGTACCCATTCGAGATATATTAGTTGCGCAAGAGCGAACA
GCCAACAACTACAAGTACGCTTCGAAGATTTCAGATCGCATTCCGGCTAA
CCCCGAATCTCGAGTCCTCTCAACGTCCTCCCGTCATAGCCGCATTATGA
CGCAATACGTTGTGCCCAGCCACATCGCAAAACTTGCTCTAATTTTTTTG
TCTGACCCGCCCTTGTCGGGTTGCTGTGTCTTTGTCTGTCCCAGGCGGAG
GAGCCCTTTGTCGATGATGATGTTGAGGCGGACCTGTCTTCCGTCAGGAA
CGTCTCCGCAGGCTCGGATCCGTCGGCCAGGGCGTCGAAGAGTGTTGTTT
CCGGCGGTGGTGCTTGTCGGCAGTCGACGGGGGCTGCCCCGCAGGGTTCG
TCTTCGCAGACGGTACCTGCCCCGTCCACACGTCGCCAGTCCGCGCCCCC
CGTTACCGGTGCTGGTAGCGGGAGCGGCGGCGGCAGCAGCAGTGAGCACC
TCACGCAGGACTTCTGGTACGTTTGGCGAGATCACACCCTCGCGCCCTGC
TGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGCTGA
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Coding sequence (CDS) from alignment at chr_00:1170044..1171488+

>Ec-00_000910.1 ID=Ec-00_000910.1|Name=Ec-00_000910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=510bp|location=Sequence derived from alignment at chr_00:1170044..1171488+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCAAGAGGGTCGGGTTCATCGACCCGTAGGGCTACCCCTAATGC
CATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGGTAACCCGCTTCT
CCCGCTCCAAGTCTAAAGGAAAGGGGAAGAAGGATGCTTCGCCACCGCCG
CAGGCTCAAGCGGAGGAGCCCTTTGTCGATGATGATGTTGAGGCGGACCT
GTCTTCCGTCAGGAACGTCTCCGCAGGCTCGGATCCGTCGGCCAGGGCGT
CGAAGAGTGTTGTTTCCGGCGGTGGTGCTTGTCGGCAGTCGACGGGGGCT
GCCCCGCAGGGTTCGTCTTCGCAGACGGTACCTGCCCCGTCCACACGTCG
CCAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGGCGGCA
GCAGCAGTGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCAC
ACCCTCGCGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCG
TCGCTGCTGA
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Synonyms
The feature 'Ec-00_000910.1' has the following synonyms
Synonym
Esi1283_0001
Esi_1283_0001