Ec-00_000880.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000880.1
Unique NameEc-00_000880.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length236
Homology
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.060e-40
Identity = 132/186 (70.97%), Postives = 136/186 (73.12%), Query Frame = 3
Query:  288 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSAXXXXXXXXAPDSEKNGASAEGGS 845
            PRDDSIKP+VVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEAR+RVGGRCYTKRWISSGVKPPER XXXXX                  EK X  XXXXXXXXXXXXXXX        XXXXXXXXX     EKVPE G +EL A ATSTPPAP SA        APDS K GA+AEGGS
Sbjct:  513 PRDDSIKPIVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARRRVGGRCYTKRWISSGVKPPERPXXXXXSTKGPRVARREAAAAA--EKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGAAEKVPEKGEQELAASATSTPPAPDSADAAIAA--APDSGKRGAAAEGGS 694          
BLAST of Ec-00_000880.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.140e-31
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 3
Query:  369 AGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSA 776
            +GLG ALELQKLGIEVIV EARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSA
Sbjct:  454 SGLGGALELQKLGIEVIVGEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSA 589          
BLAST of Ec-00_000880.1 vs. uniprot
Match: D8LDW3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.350e-12
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 3
Query:  702 EKVPETGGRELTAGATSTPPAPGSAXXXXXXXXAPDSEKNGASAEGGS 845
            EKVPETGGRELTAGATSTPPAPGS XXXXXXXXAPDSEKNGASAEGGS
Sbjct:   40 EKVPETGGRELTAGATSTPPAPGSXXXXXXXXXAPDSEKNGASAEGGS 87          
BLAST of Ec-00_000880.1 vs. uniprot
Match: UPI0003602C02 (flavin monoamine oxidase family protein n=1 Tax=Longispora albida TaxID=203523 RepID=UPI0003602C02)

HSP 1 Score: 68.6 bits (166), Expect = 2.130e-9
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  288 PRDDSIKPVVVSSLGR----PHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGV 485
            P  DSI  VV + LGR    P RV+V+GAG AGL AA ELQ+ G E +V+EA+ RVGGR YT R  + G+
Sbjct:   29 PVPDSILDVVTAGLGRREQHPKRVIVIGAGMAGLVAAFELQRQGHEPVVLEAQNRVGGRVYTMRDFAPGL 98          
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A7X4BVU0_9BACT (FAD-dependent oxidoreductase n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4BVU0_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 4.590e-8
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  288 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKR 467
            P +    P  +++ GRP R+VVVGAG AGL AA EL + G EV V+EAR+RVGGR  T R
Sbjct:   32 PVEPEDSPGALAATGRPMRIVVVGAGMAGLAAAYELSRAGHEVTVLEARERVGGRVLTLR 91          
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A7S2SPD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPD9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.860e-8
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 3
Query:  333 RPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTK 464
            R  RVVV+GAG AGL AA EL+KLG EVIV+EAR R+GGRC+++
Sbjct:  131 RLFRVVVIGAGMAGLAAARELEKLGFEVIVLEARHRIGGRCHSE 174          
BLAST of Ec-00_000880.1 vs. uniprot
Match: UPI0016899B31 (FAD-dependent oxidoreductase n=2 Tax=Phormidium sp. FACHB-1136 TaxID=2692848 RepID=UPI0016899B31)

HSP 1 Score: 63.5 bits (153), Expect = 9.240e-8
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  324 SLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYT 461
            ++  P RV+VVGAG AGL AA ELQ+LG EV+VVEAR R+GGR +T
Sbjct:   31 TVSNPKRVIVVGAGLAGLAAAQELQRLGHEVVVVEARDRIGGRVWT 76          
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A838MFQ8_9HYPH (FAD-dependent oxidoreductase n=3 Tax=Rhizobiaceae TaxID=82115 RepID=A0A838MFQ8_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-7
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3
Query:  300 SIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVK 488
            ++KP   ++ G+P +V+VVGAG AGL AA  L + GIEVIVVEAR R+GGR  T R +   V+
Sbjct:   71 ALKPAFAAAAGKP-KVIVVGAGIAGLSAARTLMRHGIEVIVVEARDRIGGRISTDRSLGVAVE 132          
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A2S9F344_9MYCO (Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp. ITM-2017-0098 TaxID=2099692 RepID=A0A2S9F344_9MYCO)

HSP 1 Score: 57.4 bits (137), Expect = 1.330e-7
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 3
Query:  345 VVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYT 461
            VVVVGAGFAGL AA EL +LG +V+V+E R RVGGR YT
Sbjct:    4 VVVVGAGFAGLSAARELSRLGRDVVVLEGRDRVGGRSYT 42          
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A6G1SFH7_9ACAR (Lysine-specific histone demethylase 1A n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SFH7_9ACAR)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-7
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3
Query:  306 KPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKR 467
            KP + S   R  RV+V+GAG +GL AA +LQK G+EVIV+EAR RVGGR +T R
Sbjct:  259 KPPLKSGGKRAGRVIVIGAGLSGLAAARQLQKFGMEVIVLEARNRVGGRVHTYR 312          
The following BLAST results are available for this feature:
BLAST of Ec-00_000880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE1.060e-4070.97PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI1.140e-3197.79PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LDW3_ECTSI1.350e-1297.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI0003602C022.130e-954.29flavin monoamine oxidase family protein n=1 Tax=Lo... [more]
A0A7X4BVU0_9BACT4.590e-855.00FAD-dependent oxidoreductase n=3 Tax=Gemmatimonade... [more]
A0A7S2SPD9_9STRA8.860e-868.18Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI0016899B319.240e-865.22FAD-dependent oxidoreductase n=2 Tax=Phormidium sp... [more]
A0A838MFQ8_9HYPH1.310e-752.38FAD-dependent oxidoreductase n=3 Tax=Rhizobiaceae ... [more]
A0A2S9F344_9MYCO1.330e-771.79Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp.... [more]
A0A6G1SFH7_9ACAR1.630e-759.26Lysine-specific histone demethylase 1A n=1 Tax=Ace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1134319..1135682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue4e-29
Seed eggNOG ortholog2880.D8LQQ1
Length849
KEGG koko:K11450
KEGG Pathwayko04714,map04714
Gene idEc-00_000880.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000880Ec-00_000880Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1134319..1135682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000880.1.1Ec-00_000880.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1134319..1134747 +
Ec-00_000880.1.2Ec-00_000880.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1135263..1135682 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008805UTR:Ec-00_000880.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1134319..1134459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000880.1CDS:Ec-00_000880.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1134460..1134747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000880.1Ec-00_000880.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1134460..1135682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=236bp
MQRQQQQLQQSSRKNKRRQEDTSAVEAAKKKRKVQGGGGDPTATARKKKP
RDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQR
VGGRCYTKRWISSGVKPPERPPPPPPSTKGPRVARREAAAAAAAEKAAME
KAAAAEKAAAGGTAAGGKEATGGKAAAEKESAAEKVAEKVPETGGRELTA
GATSTPPAPGSAAAAAAATTAPDSEKNGASAEGGSX
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spliced messenger RNA

>Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=849bp|location=Sequence derived from alignment at chr_00:1134319..1135682+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GAGGAGGAGGAGGAGCAGGAAGAAGAGGAAGACGATGAGGAGGAAGAGGA
GCGGCAGAGGCAGCGACGGAAGCAACAGCGGAAGATGGAGAAGCTGCGGC
AGCAACGGCGAAAGCAGCAGAAGCTGCAACAGCAACGGAAGATGCAGCGG
CAGCAGCAGCAGCTTCAACAGTCCTCCAGAAAAAATAAGAGAAGACAGGA
AGACACTAGCGCTGTGGAGGCAGCTAAGAAGAAGCGGAAGGTGCAGGGCG
GCGGCGGCGACCCCACGGCCACGGCACGAAAAAAGAAACCGCGAGATGAC
TCCATCAAGCCTGTCGTAGTGAGCTCGTTGGGACGGCCGCACCGGGTCGT
TGTTGTCGGGGCCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGCTGCAGA
AACTGGGCATAGAAGTTATCGTGGTGGAGGCGAGGCAGAGGGTCGGTGGC
CGCTGCTACACGAAGCGCTGGATCTCGAGCGGGGTCAAGCCCCCGGAACG
CCCGCCGCCGCCCCCGCCATCGACGAAGGGCCCGCGGGTTGCTCGGAGGG
AGGCAGCGGCGGCGGCGGCGGCGGAAAAGGCGGCGATGGAAAAAGCAGCG
GCGGCGGAAAAAGCGGCGGCGGGGGGAACGGCGGCGGGGGGAAAAGAAGC
GACGGGGGGAAAGGCGGCGGCGGAAAAAGAGTCGGCGGCGGAAAAGGTGG
CGGAAAAGGTGCCGGAAACGGGGGGACGAGAGCTGACCGCTGGCGCTACC
AGCACTCCACCAGCACCTGGCTCTGCTGCCGCCGCTGCCGCCGCCACCAC
CGCTCCAGACTCCGAAAAGAACGGCGCGTCGGCCGAAGGGGGTTCNNNN
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protein sequence of Ec-00_000880.1

>Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=236bp
MQRQQQQLQQSSRKNKRRQEDTSAVEAAKKKRKVQGGGGDPTATARKKKP
RDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQR
VGGRCYTKRWISSGVKPPERPPPPPPSTKGPRVARREAAAAAAAEKAAME
KAAAAEKAAAGGTAAGGKEATGGKAAAEKESAAEKVAEKVPETGGRELTA
GATSTPPAPGSAAAAAAATTAPDSEKNGASAEGGSX
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mRNA from alignment at chr_00:1134319..1135682+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1364bp|location=Sequence derived from alignment at chr_00:1134319..1135682+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GAGGAGGAGGAGGAGCAGGAAGAAGAGGAAGACGATGAGGAGGAAGAGGA GCGGCAGAGGCAGCGACGGAAGCAACAGCGGAAGATGGAGAAGCTGCGGC AGCAACGGCGAAAGCAGCAGAAGCTGCAACAGCAACGGAAGATGCAGCGG CAGCAGCAGCAGCTTCAACAGTCCTCCAGAAAAAATAAGAGAAGACAGGA AGACACTAGCGCTGTGGAGGCAGCTAAGAAGAAGCGGAAGGTGCAGGGCG GCGGCGGCGACCCCACGGCCACGGCACGAAAAAAGAAACCGCGAGATGAC TCCATCAAGCCTGTCGTAGTGAGCTCGTTGGGACGGCCGCACCGGGTCGT TGTTGTCGGGGCCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGCTGCAGA AACTGGGCATAGAAGTTATCGTGGTGGAGGTGAGCCGGAGGAGGGGGGGG GGGTGCAGAGTATAATTTGTTTTTTGGGGGGGGGACATTGGACGTGCACG TCGATGTAGGATACGGTTACCCTTCGGATTTGTGGTCTGACTAGTGTCCG CGTGGTGGTGTCGAAGACGTGTGTACCGGAGACCTCGTCCCACCTTGTAA CACGGTTCTTCTCATGTATGACCGCGATTAACTCGTGTCCTATTCGATGC CGACCTGCTTCGAGAGAGAAGGAACCCCTTTTTTTGGCAGTCTCTCTTCT CGCAAGCGTGGAAATGCACACGCGTGACACTACTTTCGTCGCCCTGTACA CGGGAGTTACGCGCACCAAAGTTATCTGCCGTTGTATGTTTTGATGTTCT GGCGCCAGTATACTGCGCTGTTCGCTACTCGTAGCCAGCACCAGCAGAGA CAATACTAAAGTGCACCTCGCAAACACAGAGACACTCTGGCCTCCACTCG TACCGTCTGCCGACCCGCGGCCACGTGGTGGACTCTGACAACAGGCGAGG CAGAGGGTCGGTGGCCGCTGCTACACGAAGCGCTGGATCTCGAGCGGGGT CAAGCCCCCGGAACGCCCGCCGCCGCCCCCGCCATCGACGAAGGGCCCGC GGGTTGCTCGGAGGGAGGCAGCGGCGGCGGCGGCGGCGGAAAAGGCGGCG ATGGAAAAAGCAGCGGCGGCGGAAAAAGCGGCGGCGGGGGGAACGGCGGC GGGGGGAAAAGAAGCGACGGGGGGAAAGGCGGCGGCGGAAAAAGAGTCGG CGGCGGAAAAGGTGGCGGAAAAGGTGCCGGAAACGGGGGGACGAGAGCTG ACCGCTGGCGCTACCAGCACTCCACCAGCACCTGGCTCTGCTGCCGCCGC TGCCGCCGCCACCACCGCTCCAGACTCCGAAAAGAACGGCGCGTCGGCCG AAGGGGGTTCNNNN
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Coding sequence (CDS) from alignment at chr_00:1134319..1135682+

>Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=708bp|location=Sequence derived from alignment at chr_00:1134319..1135682+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCGGCAGCAGCAGCAGCTTCAACAGTCCTCCAGAAAAAATAAGAG
AAGACAGGAAGACACTAGCGCTGTGGAGGCAGCTAAGAAGAAGCGGAAGG
TGCAGGGCGGCGGCGGCGACCCCACGGCCACGGCACGAAAAAAGAAACCG
CGAGATGACTCCATCAAGCCTGTCGTAGTGAGCTCGTTGGGACGGCCGCA
CCGGGTCGTTGTTGTCGGGGCCGGATTCGCAGGGCTTGGTGCTGCGCTCG
AGCTGCAGAAACTGGGCATAGAAGTTATCGTGGTGGAGGCGAGGCAGAGG
GTCGGTGGCCGCTGCTACACGAAGCGCTGGATCTCGAGCGGGGTCAAGCC
CCCGGAACGCCCGCCGCCGCCCCCGCCATCGACGAAGGGCCCGCGGGTTG
CTCGGAGGGAGGCAGCGGCGGCGGCGGCGGCGGAAAAGGCGGCGATGGAA
AAAGCAGCGGCGGCGGAAAAAGCGGCGGCGGGGGGAACGGCGGCGGGGGG
AAAAGAAGCGACGGGGGGAAAGGCGGCGGCGGAAAAAGAGTCGGCGGCGG
AAAAGGTGGCGGAAAAGGTGCCGGAAACGGGGGGACGAGAGCTGACCGCT
GGCGCTACCAGCACTCCACCAGCACCTGGCTCTGCTGCCGCCGCTGCCGC
CGCCACCACCGCTCCAGACTCCGAAAAGAACGGCGCGTCGGCCGAAGGGG
GTTCNNNN
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Synonyms
The feature 'Ec-00_000880.1' has the following synonyms
Synonym
Esi1269_0001
Esi_1269_0001