Ec-00_000870.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_000870.2 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.410e-36 Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQDRIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQDRIMELALT+S SMT E+CE C GS+Y QYGRE Sbjct: 195 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQDRIMELALTESSSMTTELCELTCAGSSYFSTQYGRE 269
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FJ36_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ36_ECTSI) HSP 1 Score: 122 bits (307), Expect = 8.140e-32 Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQDRIMELALTDSFSMTME 439 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQDRIMELALTDSFSMTME Sbjct: 56 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQDRIMELALTDSFSMTME 111
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI) HSP 1 Score: 107 bits (267), Expect = 2.780e-25 Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C GN D+TCGGF AA+VY Y T E TPT S+VGC+QD+ D R+MELALTDS SMT E+CEAECTG+ Y G+QYG E Sbjct: 46 CAGNADQTCGGFDAANVYRY-TNESTPTSSFVGCYQDESDARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSE 120
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI) HSP 1 Score: 107 bits (268), Expect = 8.230e-23 Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C G+ D+TCGGF AA+VY Y T E TPT S+VGC+QD+ D RIMELALTDS SMT E+CEAECTG+ + G+QYGRE Sbjct: 701 CAGDADQTCGGFDAANVYRY-TDESTPTSSFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGNTFFGMQYGRE 775
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI) HSP 1 Score: 106 bits (265), Expect = 9.630e-23 Identity = 60/109 (55.05%), Postives = 71/109 (65.14%), Query Frame = 2 Query: 176 LPTSALSTDEMLVWAGW-HRLRKAWGVD*VHL*CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 + T L T + + W H LR + G+ D+TCGGF AA+VY Y T PT S+VGC+QD+ D RIMELALTDS SMTMEICEAECTG+ Y GLQYGRE Sbjct: 324 MTTEVLLTSAVRAYMPWKHLLRHP-------VRARGDADQTCGGFDAANVYQY-TDGNAPTSSFVGCYQDESDARIMELALTDSSSMTMEICEAECTGNTYFGLQYGRE 424
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 105 bits (261), Expect = 4.470e-22 Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C G+ D+TCGGF AA+VY Y+ + T ++VGC+QD+ D RIMELALTDS SMT E+CEAECTGS Y G+QYGRE Sbjct: 396 CAGDADQTCGGFDAANVYLYTGDDALSTSTFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRE 471
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 103 bits (256), Expect = 3.290e-21 Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C G+ D+TCGGF AA+VY Y+ + T S+VGC+QD+ D RIMELALTDS SMT E CEAECTG+ Y G+QYGRE Sbjct: 811 CAGDADQTCGGFDAANVYLYTGDDVPTTSSFVGCYQDESDARIMELALTDSSSMTKERCEAECTGNTYFGMQYGRE 886
BLAST of Ec-00_000870.2 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.920e-20 Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQ-DRIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C G+ D+TCGGF AA+VY+Y T E T ++VGC+QD+ RIMELALTDS SM+ME+CEA+C G+ Y GLQYGRE Sbjct: 274 CAGDADQTCGGFDAANVYSY-TDESTAISAFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRE 348
BLAST of Ec-00_000870.2 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 8.630e-19 Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C G+ D+ CGGF AA+VY ++ T T S VGC+QD+ D RIME ALTD+ SMTME+CEAEC+G+ Y G+QYG E Sbjct: 163 CSGDADQLCGGFDAANVYLFTG--ETSTSSLVGCYQDESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTE 236
BLAST of Ec-00_000870.2 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 3.830e-9 Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 2 Query: 272 CPGNPDETCGGFYAASVYAYSTVE-PTPTFSYVGCFQDDQDRIMELALTDSFSMTMEICEAECTGSAYVGLQYGRE 496 C G+ ETCGGFYA S+Y + + SY+GC+ D D + + S +MT EIC A C GSAY G QY E Sbjct: 304 CGGDAGETCGGFYAMSIYENDADDGESDDPSYLGCYSDPADSRVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVE 379 The following BLAST results are available for this feature:
BLAST of Ec-00_000870.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_000870.2 ID=Ec-00_000870.2|Name=Ec-00_000870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=175bpback to top spliced messenger RNA >Ec-00_000870.2 ID=Ec-00_000870.2|Name=Ec-00_000870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=797bp|location=Sequence derived from alignment at chr_00:1114258..1117253- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. CTGGTACAATCGCGATGACACGTTGGCATAGAGACACTTGTGGCCTGCCGback to top protein sequence of Ec-00_000870.2 >Ec-00_000870.2 ID=Ec-00_000870.2|Name=Ec-00_000870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=175bp MPREPRRDMRRLLRRQCLRLLDGGANAHVFLCGMLPGRPGPYHGARADGQback to top mRNA from alignment at chr_00:1114258..1117253- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_000870.2 ID=Ec-00_000870.2|Name=Ec-00_000870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2996bp|location=Sequence derived from alignment at chr_00:1114258..1117253- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:1114258..1117253- >Ec-00_000870.2 ID=Ec-00_000870.2|Name=Ec-00_000870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=525bp|location=Sequence derived from alignment at chr_00:1114258..1117253- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_000870.2' has the following synonyms
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