Ec-00_007280.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007280.2
Unique NameEc-00_007280.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length103
Homology
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BLAST of Ec-00_007280.2 vs. uniprot
Match: A0A6H5J804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J804_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.240e-13
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:  215 VRHRLGRVFDKVVKARNRAAEMITSKAIANQILK---TASSPASAAVGLADGARAAGTAGEGS 394
            VRH LGRVFDKVVKARN   EMITSKAIAN +LK   TASSPASAAVGLADGAR AGTA EGS
Sbjct:  500 VRHHLGRVFDKVVKARNLTGEMITSKAIANHMLKPYLTASSPASAAVGLADGARDAGTAREGS 562
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BLAST of Ec-00_007280.2 vs. uniprot
Match: D7G4C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-8
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 2 
Query:  104 PQAQPRRELRASIVQQPRGSPRSHRGEEPAGEGLQPD 214
            P+  P   LRASIVQQPRGSPRSHRGEEPAGEGLQPD
Sbjct:   16 PRLSPAGRLRASIVQQPRGSPRSHRGEEPAGEGLQPD 52
The following BLAST results are available for this feature:
BLAST of Ec-00_007280.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J804_9PHAE1.240e-1382.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4C5_ECTSI1.640e-883.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11752337..11755992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1881
Hectar predicted targeting categoryother localisation
Gene idEc-00_007280.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007280Ec-00_007280Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11752337..11755992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007280.2Ec-00_007280.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11754392..11754700 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007280.2.1Ec-00_007280.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11752337..11752464 +
Ec-00_007280.2.2Ec-00_007280.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11753078..11753165 +
Ec-00_007280.2.3Ec-00_007280.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11754328..11755992 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0072805UTR:Ec-00_007280.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11752337..11752464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007280.2CDS:Ec-00_007280.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11754392..11754700 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0072803UTR:Ec-00_007280.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 11754701..11755992 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007280.2 ID=Ec-00_007280.2|Name=Ec-00_007280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=103bp
MITSKAIANQILKTASSPASAAVGLADGARAAGTAGEGSRVLHRPRLERQ
TGRGMPEQQERVLESCIGRGWSGRRGGGRRNSRRGFWIRLPPLNAVGVCF
VF*
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spliced messenger RNA

>Ec-00_007280.2 ID=Ec-00_007280.2|Name=Ec-00_007280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1881bp|location=Sequence derived from alignment at chr_00:11752337..11755992+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCCCTGGAGGAACAGGAATTCGAAAAGAAGATGGACGCGCTCAAGGCCAG
TGTCGAGTCGATGAAGGACAAAGGACGCGCTCAAGGCGCTGTCCGGGACG
TCCTCCCCAGGCTCAGCCCCGCAGGGAGGCTACGGGCTTCCATTGTTCAA
CAGCCTCGGGGAAGCCCTCGATCTCATCGCGGAGAAGAACCTGCAGGAGA
AGGCCTTCAACCAGACGGTGCGACACCGTTTGGGCCGTGTCTTCGACAAG
GTCGTCAAGGCTAGGAATCGGGCGGCGGAGATGATCACGTCGAAAGCGAT
CGCGAACCAGATATTGAAGACGGCCTCGAGTCCTGCATCGGCCGCGGTTG
GATTGGCAGACGGGGCGAGGGCCGCCGGAACAGCAGGAGAGGGTTCTCGA
GTCCTGCATCGGCCGCGGTTGGAGCGGCAGACGGGGCGAGGGATGCCGGA
ACAGCAGGAGAGGGTTCTCGAGTCCTGCATCGGCCGCGGTTGGAGCGGCA
GACGGGGCGGGGGACGCCGGAACAGCAGGAGAGGGTTCTGGATAAGGCTG
CCCCCTCTCAACGCCGTGGGTGTGTGTTTCGTTTTCTAGAGCATGGCCTA
CAGGACAGAGCAATTCTGTTTGATTCCGCTTCATGTTGTGGTCTTGCGTG
TGTCTTTGTTTTGTCTGTTTTGTTTTTTTTTCACCGTCATGGGACAGGGT
AGTGACGCTTGCTGTTACTGTCAAGCGCTGGGGGTGTAATACTGTACGTC
CACGGATGATCATGTTTTTGTTCGTTTATTTTTAGGCTCTCCCGCTGGTT
TCGAGAGAGAGGCTCGGAAGGGGTGCGTGCGTGTTCAATTTTCCTGATAA
TGTGCAAGTATATTAGTGAGTCCCTCGACGCTGCTTCAGGGAGGACGTTG
CTAGAGTCGTCGAATGGTCGCGGTAGTATATTTGCGTAGGAAAGGGCCTT
TTATGCCCTCTGCCCCGTGATTGTGTTGTGGTTTGGTTGCTCTTTTTGCC
TCTGTCATGAACAGGCCGGTGTGGTGACTCTCGGTTGCTTTATTTTTGGT
CGTGCGGGCATGTGGGGGAGCTGCGTGTTGTAGGTCTGTTGTTGTTTCTA
GCTCTGTCGAGGGACAAGCGGGGCGTGATGCCTCGGTTGTGGTGTTTTTT
TGTCGTGCGGGCATATGGTGGGCAACTGGGCCTCGTTCTTGGCGGAGAGT
AAGGTGAGGGCCGAGGGCAATATCTACTGGCGAACGTGCTTAATAGCACC
CATTAGATGTCGTCGATCTCAACAACAGCCGCTGGTGGGCCACTGCCTTA
CCGTCCACGAACATGTTCAATGGCACCCGATCTCAACAGCCGCTGGTAGG
CCATTGAAGGAGATGCGTCCAGCCGCCGGACTAGATCAATCGTAGCGGTG
GTGTTGTGATAATATGCATAGAGCGCCGTGGTGTGTTGAGTTCCTTTTTT
TTTGCTCTCCCGCTGGTTTCGAGAGACTCAGCGTGCGTGTTCACGTTTCG
TCATACTGTGTACTTGTTCTAGTCCCTCGACGCTGTGCGTCAACGAGGAC
GTTGCGAGAGTAATCGAGTGGTCGCCGAAGTCTGCGCGTAGAACGAAAGA
GACGCGGTCTTTTGCCTTCTGCACTGTGACGCTGTTGTGGTGTGCTTGTT
TTTATCTTTGCCATGGAAGAGGCGGGTCTAGTGACTCTCTCGGTTGTGTA
TCTTGTCTGTACTGCAGTTGTCTACGCACATCGATGGTCGGTGTCTGTTG
TTTACGTGGCTTTCGCTTAACAAGGAAATACCCGAGGAATTAACAAGGAT
ATACCCGAGGAACTATAGGATATATTAAGCCACACCATCTCCATACTTCA
AGTCTGTGGCGGGTGTGCCGCCTTCGCGATG
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protein sequence of Ec-00_007280.2

>Ec-00_007280.2 ID=Ec-00_007280.2|Name=Ec-00_007280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=103bp
MITSKAIANQILKTASSPASAAVGLADGARAAGTAGEGSRVLHRPRLERQ
TGRGMPEQQERVLESCIGRGWSGRRGGGRRNSRRGFWIRLPPLNAVGVCF
VF*
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mRNA from alignment at chr_00:11752337..11755992+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007280.2 ID=Ec-00_007280.2|Name=Ec-00_007280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3656bp|location=Sequence derived from alignment at chr_00:11752337..11755992+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCCCTGGAGGAACAGGAATTCGAAAAGAAGATGGACGCGCTCAAGGCCAG
TGTCGAGTCGATGAAGGACAAAGGACGCGCTCAAGGCGCTGTCCGGGACG
TCCTCCCCAGGCTCAGCCCCGCAGGGAGGTAAGGGCCAAACCTCCACTGC
CACCGCAGCCCTCGCCACGGTGTGCTTCCTCGCTGTAGTCACAATTCAGT
ATTTATCGCGTCAGTCAGAGAGCGCACGCGCTAGCGTGTACTGAACCAAT
ATCCAAATGGGTCCGAAGATCTATTGCTGAGTGGTTCGGTGAATTCGCGC
AGCGTCCTTTAAACGCGTTGAACAGGAACTTTTTTTTTCTCCCACGGTCG
TTCTGAACGAACATAGCCCCTCCACCTTGCAAAGGGTTTTTAGTAACACC
CGGGAGAATAACGTAGGTACGTATGTACGTCCATTTCCACGGCGAAGTAC
TTTATTCACTTACCCTCCGTCAAGTGGCTTGAGAGCTCGCACAAATCCCA
AGAAAAAACAAGACTAGCGGCGGGTACTTGTGCGCCGATCTATAGCCTTA
CGAAGATCCTCCGGTCGCTAAAATGATAATGCATGAAGCCCCTTTCTGTT
GGCCAAAAGGTTCGTTTCAGCATTTTTCCCATTAGTCTCGGTTCCGCATA
AAATACATTTCGGTTTGGCTGGCCCCCAAGCTTCCCCGAAGGTGTTTATA
TTCCGCACCTCCCCCCGACAAAGGCCTGTGAAATGAACAAGGCTACGGGC
TTCCATTGTTCAACAGCCTCGGGGAAGCCCTCGATCTCATCGCGGAGAAG
AACCTGCAGGAGAAGGCCTTCAACCAGACGTGAGTGTAGTGTTCTCTCCT
AGGACAGCCAACCGAGCGTCTCCGACGACATGCTACACCGGCCGTGCCCA
GTCAATTTTTTCGCACTAATATATGGTATCCACTATGGATTGACGCGGAA
TTTTGACCTTTGAGGATTGACGCCAACATAAAGTAACGGTTGAGGGTTTT
GACGGGAAAAAAATTCGCACCGCGTGTGCCCGTTGGCACGTGGTAGGGAA
AAAAAAAAAATGGTGATGTAGAGTTGCCGCGTTAAACGCCGGTCATGTGT
TCACGACCCCGGGTTGGTTCGGGATGCCACCCAGGGACGACATGCTGAAG
CGAAGACTCACACTCCCAGGCTCCCAGGAGACTAGGTGTACCCCTCCGCC
TCATCCCGCCGACCTTCCCTCTTTTGCCGCGGCGACTTCCCAGGCGTCAA
ACTGCCGTTGCTGAGTGAGGCAGCTGCTCGCTGTACTGCTGTGTACCGAT
GTCACTGCGGCAGCAGAGCACCGAACCCCGTGAGGGGGCGGGCAAAATGC
ACCTACTGACTGGCCAAGTCCGTGTACCCTCCCTTAATCCTCTATATGTG
CTCCCTTCGAGGGCGGGACTCCCCCGATTTCTGCCTATGCCCCTTTTTGC
TGCTGAAAGCCCGTGCGCAATCGCGATGGCTCATCTACCGAACGCGCGCG
CCGAACACGCGAGTCCGGCCACTGGGCCGCCGTGAGAACTGCCGAGACGT
GTGTGTGCAGGACCGCTAGGAGCAATCAGTAGGCATGGCCAATGTGTTCG
CTGCTGACCGCGCTCCTTTCGTGATTTGGTGATGGTAACAGAGCACAGAG
CAAGCGTGTGTGAGCCACAGTCTGGCGACATTGGAAGTGTCAATCTCTTC
GCGTCGGTGTAAGTTTTGACGCTTTTTCACAAAAATTTCGCCGTCAGAGT
TTGCCTCCAAAAACGCGGCGTAACCTCGTCACGTCAAAACTTCCTGAAAT
GTCAATCTTTCACGTCATTTCAACAACACGTGGATTCCCTCTAATATATC
GCCCAATTTATGCGCACCAATCGTTCGCCCAAGAGGCGTCGGGCCATGCA
TTTCCTGTCGCTGTGTCGGGAGTGTCTGAAGTTGGAACGTTTTGGGCTTA
TGAATCACTCTCATGTCCCTCCACTCCCCCTCCGCTCGCAGGGTGCGACA
CCGTTTGGGCCGTGTCTTCGACAAGGTCGTCAAGGCTAGGAATCGGGCGG
CGGAGATGATCACGTCGAAAGCGATCGCGAACCAGATATTGAAGACGGCC
TCGAGTCCTGCATCGGCCGCGGTTGGATTGGCAGACGGGGCGAGGGCCGC
CGGAACAGCAGGAGAGGGTTCTCGAGTCCTGCATCGGCCGCGGTTGGAGC
GGCAGACGGGGCGAGGGATGCCGGAACAGCAGGAGAGGGTTCTCGAGTCC
TGCATCGGCCGCGGTTGGAGCGGCAGACGGGGCGGGGGACGCCGGAACAG
CAGGAGAGGGTTCTGGATAAGGCTGCCCCCTCTCAACGCCGTGGGTGTGT
GTTTCGTTTTCTAGAGCATGGCCTACAGGACAGAGCAATTCTGTTTGATT
CCGCTTCATGTTGTGGTCTTGCGTGTGTCTTTGTTTTGTCTGTTTTGTTT
TTTTTTCACCGTCATGGGACAGGGTAGTGACGCTTGCTGTTACTGTCAAG
CGCTGGGGGTGTAATACTGTACGTCCACGGATGATCATGTTTTTGTTCGT
TTATTTTTAGGCTCTCCCGCTGGTTTCGAGAGAGAGGCTCGGAAGGGGTG
CGTGCGTGTTCAATTTTCCTGATAATGTGCAAGTATATTAGTGAGTCCCT
CGACGCTGCTTCAGGGAGGACGTTGCTAGAGTCGTCGAATGGTCGCGGTA
GTATATTTGCGTAGGAAAGGGCCTTTTATGCCCTCTGCCCCGTGATTGTG
TTGTGGTTTGGTTGCTCTTTTTGCCTCTGTCATGAACAGGCCGGTGTGGT
GACTCTCGGTTGCTTTATTTTTGGTCGTGCGGGCATGTGGGGGAGCTGCG
TGTTGTAGGTCTGTTGTTGTTTCTAGCTCTGTCGAGGGACAAGCGGGGCG
TGATGCCTCGGTTGTGGTGTTTTTTTGTCGTGCGGGCATATGGTGGGCAA
CTGGGCCTCGTTCTTGGCGGAGAGTAAGGTGAGGGCCGAGGGCAATATCT
ACTGGCGAACGTGCTTAATAGCACCCATTAGATGTCGTCGATCTCAACAA
CAGCCGCTGGTGGGCCACTGCCTTACCGTCCACGAACATGTTCAATGGCA
CCCGATCTCAACAGCCGCTGGTAGGCCATTGAAGGAGATGCGTCCAGCCG
CCGGACTAGATCAATCGTAGCGGTGGTGTTGTGATAATATGCATAGAGCG
CCGTGGTGTGTTGAGTTCCTTTTTTTTTGCTCTCCCGCTGGTTTCGAGAG
ACTCAGCGTGCGTGTTCACGTTTCGTCATACTGTGTACTTGTTCTAGTCC
CTCGACGCTGTGCGTCAACGAGGACGTTGCGAGAGTAATCGAGTGGTCGC
CGAAGTCTGCGCGTAGAACGAAAGAGACGCGGTCTTTTGCCTTCTGCACT
GTGACGCTGTTGTGGTGTGCTTGTTTTTATCTTTGCCATGGAAGAGGCGG
GTCTAGTGACTCTCTCGGTTGTGTATCTTGTCTGTACTGCAGTTGTCTAC
GCACATCGATGGTCGGTGTCTGTTGTTTACGTGGCTTTCGCTTAACAAGG
AAATACCCGAGGAATTAACAAGGATATACCCGAGGAACTATAGGATATAT
TAAGCCACACCATCTCCATACTTCAAGTCTGTGGCGGGTGTGCCGCCTTC
GCGATG
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Coding sequence (CDS) from alignment at chr_00:11752337..11755992+

>Ec-00_007280.2 ID=Ec-00_007280.2|Name=Ec-00_007280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=309bp|location=Sequence derived from alignment at chr_00:11752337..11755992+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCACGTCGAAAGCGATCGCGAACCAGATATTGAAGACGGCCTCGAG
TCCTGCATCGGCCGCGGTTGGATTGGCAGACGGGGCGAGGGCCGCCGGAA
CAGCAGGAGAGGGTTCTCGAGTCCTGCATCGGCCGCGGTTGGAGCGGCAG
ACGGGGCGAGGGATGCCGGAACAGCAGGAGAGGGTTCTCGAGTCCTGCAT
CGGCCGCGGTTGGAGCGGCAGACGGGGCGGGGGACGCCGGAACAGCAGGA
GAGGGTTCTGGATAAGGCTGCCCCCTCTCAACGCCGTGGGTGTGTGTTTC
GTTTTCTAG
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Synonyms
The feature 'Ec-00_007280.2' has the following synonyms
Synonym
Esi0552_0002
Esi_0552_0002