Ec-sdr_f_000140.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-sdr_f_000140.1
Unique NameEc-sdr_f_000140.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length757
Homology
The following BLAST results are available for this feature:
BLAST of Ec-sdr_f_000140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 370..660
e-value: 9.3E-5
score: 20.7
NoneNo IPR availablePANTHERPTHR10796PATCHED-RELATEDcoord: 29..660
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 599..622
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 524..545
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 628..651
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 652..756
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 498..517
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 579..598
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 551..578
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 623..627
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 546..550
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..497
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 518..523
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 455..658
NoneNo IPR availableTMHMMTMhelixcoord: 636..658
NoneNo IPR availableTMHMMTMhelixcoord: 498..517
NoneNo IPR availableTMHMMTMhelixcoord: 599..621
NoneNo IPR availableTMHMMTMhelixcoord: 556..578
NoneNo IPR availableTMHMMTMhelixcoord: 524..546
NoneNo IPR availableTMHMMTMhelixcoord: 268..290
NoneNo IPR availableTMHMMTMhelixcoord: 469..488

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sdr_fcontigsdr_f:504768..518520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000140.1Ec-sdr_f_000140.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAsdr_f 504768..518520 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-sdr_f_000140.1 ID=Ec-sdr_f_000140.1|Name=Ec-sdr_f_000140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=757bp
MLRTGWGRCPSFCLACTNASTTSSNTPPQVFGFVPCLLIDEKRKDVARFD
LGCCWKEATQPERIISGPPRVRSRRDSFVLEQHSDTDHLAAIADETWNDT
GDEARSPPCSPAAALVGKTVPTQLSSSCRYGTSHATGELSLPFPRSPPRV
RNGGSERGAGRNNGQDCHQTKRPDAHQPRSRHEAINNIMTAEAKREASAG
GRRVSALIQEKPRKNMTTACFEAVEAPRNPRGWGRGQGGTGGCEPSCWGG
VIQGYCNWLLDRNSARRAVLAGFGVLVATAVSIISVEGSPGYDINVFFRR
SSYLRDFVTTARRHGMLLGESSLPVAAYIRGVDLSEAATQQAILDLEIAL
VSSSQSTIAGTTSIDQDTIVSGNATSSWLRGFINWLPSSSYASSSEEYTS
TNEQGLWVGSADLFHEAVNDFLAEPEYQRFEDDFSFHEGKPVACRIWARH
LNFKGPNAVATMKAAGDAVAAIGIAPVPFVFATEYIFAEQYAATTREITF
SMIATAVSTTVIGYLFLGRVALACILALTTFAAQVQALAIVVLLYPGGSG
LNAHIITPSLFLTTGLCAGSVGALLQSFATQDCERSFYVNLRISIAETAG
PVSSASVVVAIGVLPLLLISAASTSTTYFFGSVAISALLAALLSLLHALL
LAPTLLLACEKCMVPTPTPPFSPAATIEAETLPWLPRSRPGKNVEMSGNG
YVFAVGPTGAVAVLGENKTVGSNRDGGSRGESSRTNGNRVQKAHCAGGSA
TVLDNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp