Ec-28_002420.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-28_002420.1
Unique NameEc-28_002420.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length94
Homology
BLAST of Ec-28_002420.1 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.720e-64
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGAEATATRTTTASSPI 93
            MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGAEATATRTTTASSPI
Sbjct:    1 MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGAEATATRTTTASSPI 93          
BLAST of Ec-28_002420.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.360e-48
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0
Query:    1 MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPI 77
            MGDRD PSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPI
Sbjct:    1 MGDRDIPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPI 77          
BLAST of Ec-28_002420.1 vs. uniprot
Match: L8H910_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H910_ACACA)

HSP 1 Score: 63.5 bits (153), Expect = 9.100e-10
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    8 SHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVF 72
            S  LF++++P ++TE E    F+   G+ S R+R+D+NE+ VGFV+F D +SA  A+E+F    F
Sbjct:   45 STALFIAEIPLEVTEAEFRSTFSSEPGYISARLRRDRNENTVGFVEFSDHKSAAEAREQFNNFKF 109          
BLAST of Ec-28_002420.1 vs. uniprot
Match: A0A2P6N8W8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N8W8_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 2.110e-9
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    8 SHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVF 72
            S  LF+++LP DIT+++L  +F    GF+S R+RKDKN + V F++F D ++A  AK   +G  F
Sbjct:   10 SSTLFLAELPFDITQEDLVSIFEVYDGFQSARIRKDKNNNLVAFLEFSDADAAATAKSNAQGIKF 74          
BLAST of Ec-28_002420.1 vs. uniprot
Match: F4PLK3_CAVFA (RNA-binding region RNP-1 domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLK3_CAVFA)

HSP 1 Score: 58.9 bits (141), Expect = 3.650e-8
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    7 PSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGH 70
            P   LFVS+LP D+TE+EL  LF    GF SCR+   + ++ + F DF D  SA +A E  +G+
Sbjct:  213 PQSTLFVSNLPKDVTERELSILFRFMRGFISCRLVIREGKYPICFCDFRDIPSAIMAMEILQGY 276          
BLAST of Ec-28_002420.1 vs. uniprot
Match: Q55ER7_DICDI (RNA-binding region RNP-1 domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55ER7_DICDI)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-6
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0
Query:    7 PSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKG 69
            P   LFVS+LP D+TE+EL  LF    GF   R+   + +  + F DF+DT+S+  A E  +G
Sbjct:  270 PCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLPMCFCDFIDTQSSMFALEFLQG 332          
BLAST of Ec-28_002420.1 vs. uniprot
Match: UPI0006450842 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450842)

HSP 1 Score: 53.9 bits (128), Expect = 2.380e-6
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0
Query:   11 LFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHP 76
            LFVS+LP D+TE+EL  LF    GF S R+     ++ + F DF D  SA +A E   G  FR  P
Sbjct:  251 LFVSNLPKDVTERELSILFRFMRGFVSVRLVHRDGKYPICFCDFRDVPSAAMAMEILNG--FRMDP 314          
BLAST of Ec-28_002420.1 vs. uniprot
Match: D3AYT0_POLPP (RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AYT0_POLPP)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-6
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0
Query:   11 LFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKG 69
            LFVS+LP D+TE+EL  LF    GF + R+ + + ++ + F DF DT SA  A E   G
Sbjct:  273 LFVSNLPKDVTERELSILFRFMRGFINVRLVQREGKYPICFCDFRDTLSAAGAMEMLNG 331          
BLAST of Ec-28_002420.1 vs. uniprot
Match: A0A1R1YMK2_9FUNG (U1 small nuclear ribonucleoprotein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YMK2_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 4.750e-6
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
Query:    7 PSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAK 64
            P+  LF+  LPSD+T+ ELE LF    GF    VR    +HD+ FV++ D   AT AK
Sbjct:   71 PNKILFLQQLPSDVTQNELENLFNPFSGF--VEVRTIPGKHDIAFVEYEDEMCATNAK 126          
BLAST of Ec-28_002420.1 vs. uniprot
Match: A0A8J4Q3L3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q3L3_9MYCE)

HSP 1 Score: 53.1 bits (126), Expect = 4.750e-6
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 0
Query:   11 LFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHP 76
            LFVS+LP D+TE+E+  LF    GF   R+   + +  + F DF+DT SA +A +  +G  FR  P
Sbjct:  408 LFVSNLPKDVTEREMSILFRFMGGFIGIRLINKEGKLPICFCDFIDTPSAAMALDMLQG--FRMDP 471          
The following BLAST results are available for this feature:
BLAST of Ec-28_002420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FXN5_ECTSI1.720e-64100.00RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4C0_9PHAE2.360e-4898.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L8H910_ACACA9.100e-1041.54RNA recognition motif domain containing protein n=... [more]
A0A2P6N8W8_9EUKA2.110e-943.08Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F4PLK3_CAVFA3.650e-843.75RNA-binding region RNP-1 domain-containing protein... [more]
Q55ER7_DICDI1.300e-641.27RNA-binding region RNP-1 domain-containing protein... [more]
UPI00064508422.380e-643.94hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3AYT0_POLPP3.330e-644.07RNA-binding region RNP-1 domain-containing protein... [more]
A0A1R1YMK2_9FUNG4.750e-644.83U1 small nuclear ribonucleoprotein n=1 Tax=Smittiu... [more]
A0A8J4Q3L3_9MYCE4.750e-640.91Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..80
e-value: 9.3E-12
score: 55.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..77
e-value: 3.5E-15
score: 55.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..84
score: 11.827
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..90
e-value: 2.7E-18
score: 68.0
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 11..75
NoneNo IPR availablePANTHERPTHR10501:SF41PROTEIN COUCH POTATOcoord: 11..75
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2225453..2230010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002420.1Ec-28_002420.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_28 2225173..2230130 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-28_002420.1 ID=Ec-28_002420.1|Name=Ec-28_002420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=94bp
MGDRDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVG
FVDFLDTESATIAKERFKGHVFRGHPIGAEATATRTTTASSPI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf