Ec-00_003160.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_003160.1
Unique NameEc-00_003160.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length99
Homology
BLAST of Ec-00_003160.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 3.930e-70
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF 98
            MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF
Sbjct:    1 MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF 98          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.500e-48
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0
Query:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            +TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV
Sbjct:  153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.540e-38
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            +TPFQCRLRDC+YSAP++VNVRYTRGRQIV K N+ IGR+P+ML S  CVLTGK+E ELA +KECPYDPGGYFV+KGVEKV
Sbjct:   52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132          
BLAST of Ec-00_003160.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 143 bits (360), Expect = 1.470e-37
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            VTPFQCRLRDCTYSAP+ V+VRYTRGRQIV K  + IGRIP+ML SCKC+L G+SEAELA+ KECPYDPGGYF+VKGVE+V
Sbjct:  121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH)

HSP 1 Score: 131 bits (329), Expect = 2.510e-37
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 0
Query:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            VTPFQCRLRDCTYSAPL+VNV+YTR +QIV K NI IGRIP+ML S KCVL  KS  EL  +KEC YDPGGYFVVKG EKV
Sbjct:   23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 5.020e-37
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    6 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + +GR+P+ML S KC+L+ K+E +LA MKECPYDPGGYFV+KGVEKV
Sbjct:  140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV)

HSP 1 Score: 130 bits (328), Expect = 1.120e-36
Identity = 56/80 (70.00%), Postives = 72/80 (90.00%), Query Frame = 0
Query:    6 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            +PFQCRLRDCTYSAP++V+VRYTRGRQIV K  + +GR+P+ML S KC+L+GK+E +LA M+ECP+DPGGYF++KGVEKV
Sbjct:   51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.480e-36
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    6 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IG++P+ML S KC+L GKSE +LA MKECPYDPGGYFVVKGVEKV
Sbjct:  162 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKCILNGKSEQDLARMKECPYDPGGYFVVKGVEKV 241          
BLAST of Ec-00_003160.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS)

HSP 1 Score: 138 bits (347), Expect = 8.300e-36
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    6 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IGR+P+ML S KC+L  KSE ELA MKECPYDPGGYFV+KGVEKV
Sbjct:   61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140          
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.350e-35
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    6 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
            TPFQCRLRDCTYSAP++V+VRYTRGRQIV K  I IGR+P+ML S KC+LTGK+  +LA MKECP+DPGGYFVVKGVEKV
Sbjct:  295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374          
The following BLAST results are available for this feature:
BLAST of Ec-00_003160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP28_ECTSI3.930e-70100.00DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE1.500e-4898.77DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S3DT07_9STRA1.540e-3877.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
I2CNY0_NANGC1.470e-3779.01DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A482SHA3_9ARCH2.510e-3776.54DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A7S2XTK8_9STRA5.020e-3775.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7S2EFY4_TRICV1.120e-3670.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A1E7EUM7_9STRA4.480e-3678.75DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
B8BQM2_THAPS8.300e-3678.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QYU8_9STRA7.350e-3577.50DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 5..85
e-value: 3.0E-28
score: 98.7
NoneNo IPR availableGENE3D3.90.1100.10coord: 2..88
e-value: 4.3E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 5..85
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 5..86
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 5..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3200250..3201086 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003160.1Ec-00_003160.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 3200250..3201086 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_003160.1 ID=Ec-00_003160.1|Name=Ec-00_003160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=99bp
MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLS
CKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2