Ec-00_002530.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_002530.1
Unique NameEc-00_002530.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length129
Homology
BLAST of Ec-00_002530.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 9.550e-83
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS 128
            MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS
Sbjct:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS 128          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 6.170e-75
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS 128
            MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGV+TQKQALLYIGTKMRVPPKAGARAMRQQSS
Sbjct:  236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS 363          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.570e-44
Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVP 115
            MQEQLSKNRVIIE D K N+SA I SSTHERKSRC IH+K+GKVY+ HN+LGDDVPIVV ++AMG  SDQEIVQLVGSEP +++AF  S+E++ +VGV TQKQAL YIG KMR P
Sbjct:  212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNP 326          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 8.160e-41
Identity = 74/112 (66.07%), Postives = 94/112 (83.93%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKM 112
            M EQLSKNRVIIE D K N+SAAITSSTH+RKSRCNI  KN K+Y+KHNSLGDD+PIV+IL+AMG   DQEIVQLVG+EP++++ F  SLE+  ++G+F+Q QAL +IG ++
Sbjct:   66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRV 177          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A1V9Z156_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z156_9STRA)

HSP 1 Score: 151 bits (381), Expect = 7.090e-40
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGA 120
            EQLSKNRVI+E DGK N+ A+ITSSTHERKSR NI +  GK+Y+K NS  DD+PIVV+ R MG TSDQEIV LVG EPD+M++F AS+E+S  + +FTQ QAL YI +KM++  KAGA
Sbjct:  208 EQLSKNRVILEEDGKNNVCASITSSTHERKSRTNIFLNKGKIYLKSNSFTDDLPIVVVFRGMGMTSDQEIVSLVGHEPDVMDSFAASIEESSDLKIFTQTQALTYIASKMKI--KAGA 323          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA)

HSP 1 Score: 144 bits (364), Expect = 9.580e-40
Identity = 74/124 (59.68%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQ 126
            EQLSKNR+IIE DGK N+ A+ITSSTHERKSR NI +  G+VY+K NS G D+PIV++ R MG  SDQEIV LVGSE DI +   AS E++  + VFTQ+QAL YIG+KM    K GA   R +
Sbjct:  186 EQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGATGGRHR 309          
BLAST of Ec-00_002530.1 vs. uniprot
Match: K3X1L2_GLOUD (DNA-directed RNA polymerase subunit beta n=32 Tax=Oomycota TaxID=4762 RepID=K3X1L2_GLOUD)

HSP 1 Score: 144 bits (362), Expect = 2.630e-37
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    3 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQ 126
            EQLSKNRVIIE D K+N+ A+ITSSTHERKSR NI +   +VY+K NS G D+PIV++ R MG  SDQEIV L+GSEPD+ +A  AS E++  + VFTQ QAL YIG+KM    K GA   R +
Sbjct:  196 EQLSKNRVIIEEDAKQNVCASITSSTHERKSRTNIFINKNRVYLKSNSFGSDIPIVIVFRGMGMESDQEIVSLIGSEPDVTDALTASFEEASDLKVFTQLQALEYIGSKMNAVTKVGATGGRHR 319          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.580e-37
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAG 119
            MQEQLSKNRVIIE D K + +A ITSSTHERKSRC+I +K G+VY+KHN+LG+D+PI ++ +AMG  SDQEIVQ+VGSEP+    F  SLE+   + + TQKQAL YIG K+R   + G
Sbjct:  179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRANQRPG 297          
BLAST of Ec-00_002530.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 143 bits (361), Expect = 3.620e-37
Identity = 69/112 (61.61%), Postives = 92/112 (82.14%), Query Frame = 0
Query:    2 QEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMR 113
            QEQLSKNR+I+E D K  +SA++TSSTHERKSR  I  K+G++++KHN++GDDVP+V +LRAMG TSDQEIVQLVGSEP++ +A   SLE++  +G+ TQ QAL YIG ++R
Sbjct:  468 QEQLSKNRIIVELDPKGAVSASVTSSTHERKSRTVITTKHGRIHLKHNTIGDDVPVVAVLRAMGVTSDQEIVQLVGSEPELQDALAPSLEETLELGILTQAQALEYIGARIR 579          
BLAST of Ec-00_002530.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 143 bits (360), Expect = 4.890e-37
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNG-KVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMR 113
            MQEQLSKNRVIIE D K N+SA+ITSSTH+RK R NI +KNG KVY+K+N LGDDVPIVV+L+AMG  SDQEIV +VG  P++++AF  SLE+   +G+ TQ QAL YIG K+R
Sbjct:  204 MQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYLKNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGICTQAQALRYIGAKIR 317          
The following BLAST results are available for this feature:
BLAST of Ec-00_002530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL54_ECTSI9.550e-83100.00DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE6.170e-7599.22DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA6.570e-4472.17DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3H3I2_9STRA8.160e-4166.07DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A1V9Z156_9STRA7.090e-4064.41DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A2P4YK15_9STRA9.580e-4059.68DNA-directed RNA polymerase (Fragment) n=2 Tax=Phy... [more]
K3X1L2_GLOUD2.630e-3758.87DNA-directed RNA polymerase subunit beta n=32 Tax=... [more]
A0A7S2WH87_9STRA3.580e-3760.50DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A5A8CMB6_CAFRO3.620e-3761.61DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
I2CNY0_NANGC4.890e-3765.79DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 8..128
e-value: 1.9E-30
score: 107.8
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 7..121
e-value: 3.7E-17
score: 62.6
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..119
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..119
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2747539..2749425 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002530.1Ec-00_002530.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 2747539..2749425 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_002530.1 ID=Ec-00_002530.1|Name=Ec-00_002530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=129bp
MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNS
LGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFT
QKQALLYIGTKMRVPPKAGARAMRQQSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037034RNA_pol_Rpb2_2_sf
IPR007642RNA_pol_Rpb2_2
IPR015712DNA-dir_RNA_pol_su2