Ec-00_001180.3 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_001180.3
Unique NameEc-00_001180.3
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length891
Homology
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BLAST of Ec-00_001180.3 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 625 bits (1611), Expect = 3.180e-203
Identity = 454/654 (69.42%), Postives = 455/654 (69.57%), Query Frame = 0 
Query:    1 MSTELAVTANNQARRSAVRAGTPVVMLRQSVAGSVDAANDEDGPMVAKMAEEAGDGEVEGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQARQMLECNEEEAFQERXXXXXXXEKTSAYQLRKSSSRGRTVPIGDTPDHRHCTLATTAQEQTQAVPSSSQQVPADSXXXXXXXXXXXXXXXXXXXXXPTNRLITTDLGTRHTQQTVDSAGQPLGNHQEEAGVGVDAKDRDGARRKPKGGDCAGDSNDIAFVLRKLYTGGGLDAQQQGWKCMPTNLFNTLTMQLGTLSKINMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGIYEWEAALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSSI 654
            MSTELAVTANNQARRSAVRAGTPVVMLRQSVAGSVDAANDEDGPMVAKMAEEAGDGEVEGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQ                                                                                                                                                                                                      INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGIYEWEAALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPS +
Sbjct:    1 MSTELAVTANNQARRSAVRAGTPVVMLRQSVAGSVDAANDEDGPMVAKMAEEAGDGEVEGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGIYEWEAALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSRL 456
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BLAST of Ec-00_001180.3 vs. uniprot
Match: A0A836CM02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM02_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.810e-50
Identity = 268/559 (47.94%), Postives = 324/559 (57.96%), Query Frame = 0 
Query:  333 DCAGDSNDIAFVLRKLYTGGGLDAQQQGWKCMPTNLFNTLTM--------------------QLGTLSKINMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGIYEWEAALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSSICWCHNLEVLEANDNYLEKLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLADPPAELLLLGMGAMLWECRKRHWMQVRGPPPVVRVHGFGIEEEKLELQPEFDRKLAKRIKMAGRSGELNFMMEGLTYFPMGVFQEEIGRKLKSLRLDSN 862
            D   D+  +   +R+L T G LD  QQG   +P ++  TL +                    QLG L ++N+PRN L+ L+++ N   SCAH RSV ++NLSGN L  LP E  R  +L+T    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                              D N+MPHLA+PP L+T+      A+   R   D   E   + + G                          L  G+  YN+ R ELA RGI+EW +  +  TG+V Y+NNVN     A+PACM+RLG +  L  LK ++N+LRSLP+S+C C                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L DPPA LLL G  A+L+ECRKR++ Q +G PP V VH +GI+ EKL L PEF+ KL   +  A + GE +F MEGL   P G+F+  +   L SLRLD+N
Sbjct:  157 DARADAAQLLHGVRRLLTAGVLDLPQQGLAALPPDVSTTLALXXXXXXXXXXXXXXPCSDLQQLGGLRRVNLPRNELKQLLTVDNAALSCAHFRSVTDMNLSGNGLTALPAEMGRCVALQTLRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAFGELKRLTSLDVSRCLEWLDVSSNMLSALPPTLPLMLALAHLDLDNNSMPHLAIPPALRTTEAGTDAAAAAARRGHDANCEPAEHCIAG--------------------------LQEGSSAYNKHRTELADRGIFEWSSVPDPETGRVTYLNNVNGDRSDALPACMDRLGSLASLTCLKANRNRLRSLPASVCHCAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDPPASLLLQGTDALLFECRKRYYAQQKGLPPAVGVHQYGIQGEKLALVPEFNAKLQAALDRAAKCGEFHFTMEGLKALPAGLFKPAVAAALTSLRLDTN 689
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BLAST of Ec-00_001180.3 vs. uniprot
Match: A0A7S2AYU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYU7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.080e-12
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 0 
Query:  760 NPLADPPAELLLLGMGAMLWECRKRHWMQVRGPPPVVRVHGFGIEEEKLELQPEFDRKLAKRIKMAGRSGELNFMMEGLTYFPMGVFQEEIGRKLKSLRLDSNDFSKATIVFRHTWQDL 878
            NPL  PP EL+  GM  + W  R+++   V GP PV+  H +GI +EK++L+PEF+ ++ + +  A  + EL    +GL   P  + +     +L+ L+L +N  + A   F  T Q L
Sbjct:    4 NPLEYPPYELINEGMDQLQWALRRKYLEAVHGPSPVMNAHFYGIADEKIDLEPEFNDRIQQAVDKAAMTNELVLQQQGLFELPPAINELT---ELEILKLSANHLNSAPPHFEETLQSL 119
The following BLAST results are available for this feature:
BLAST of Ec-00_001180.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LE74_ECTSI3.180e-20369.42Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CM02_9STRA1.810e-5047.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2AYU7_9STRA3.080e-1233.61Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 185..205
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 636..653
e-value: 400.0
score: 1.5
coord: 428..447
e-value: 19.0
score: 11.7
coord: 680..699
e-value: 510.0
score: 0.7
coord: 726..745
e-value: 79.0
score: 6.9
coord: 703..722
e-value: 49.0
score: 8.5
coord: 657..676
e-value: 51.0
score: 8.3
coord: 410..424
e-value: 560.0
score: 0.4
coord: 474..493
e-value: 95.0
score: 6.3
coord: 451..470
e-value: 210.0
score: 3.6
NoneNo IPR availablePANTHERPTHR16083:SF23FI16115P1coord: 406..664
NoneNo IPR availablePANTHERPTHR16083:SF23FI16115P1coord: 637..864
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 406..664
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 637..864
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 370..519
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 613..762
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 474..497
e-value: 0.14
score: 21.3
coord: 680..703
e-value: 2.9
score: 16.9
coord: 428..450
e-value: 0.6
score: 19.2
coord: 634..657
e-value: 0.019
score: 24.1
coord: 405..427
e-value: 17.0
score: 11.4
coord: 451..473
e-value: 0.79
score: 18.8
coord: 749..772
e-value: 30.0
score: 9.4
coord: 726..747
e-value: 64.0
score: 6.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 372..513
e-value: 9.5E-30
score: 105.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 453..509
e-value: 1.4E-8
score: 34.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 853..874
score: 4.686
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 430..452
score: 7.45
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 636..657
score: 7.104
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 705..726
score: 5.117
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 499..520
score: 6.272
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 453..475
score: 6.757
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 476..497
score: 7.242
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 682..703
score: 6.541
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 728..750
score: 6.511
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 407..428
score: 5.941
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 659..681
score: 5.64
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 751..772
score: 6.626

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1464756..1475064 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001180.3Ec-00_001180.3Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 1464756..1488087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_001180.3 ID=Ec-00_001180.3|Name=Ec-00_001180.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=891bp
MSTELAVTANNQARRSAVRAGTPVVMLRQSVAGSVDAANDEDGPMVAKMA
EEAGDGEVEGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASH
PGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFAREGEQQLAKEMSF
RDVNERAQNAHTLGTATLTNKIERMHRRGRERQARQMLECNEEEAFQERQ
QQQRKKEKTSAYQLRKSSSRGRTVPIGDTPDHRHCTLATTAQEQTQAVPS
SSQQVPADSVPTSNSPSAKQPQGDTPGDRKPTNRLITTDLGTRHTQQTVD
SAGQPLGNHQEEAGVGVDAKDRDGARRKPKGGDCAGDSNDIAFVLRKLYT
GGGLDAQQQGWKCMPTNLFNTLTMQLGTLSKINMPRNSLELLISLRNPNF
SCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTLRLDNNKLSGLPDGLLN
LTSLTYLSLRHNNFSNLPNRFGDLHRLEKLDLGENMLKTLPPTMGLLTSL
KHLKLDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTG
ETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGIYEWE
AALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSL
PSSICWCHNLEVLEANDNYLEKLPARLGEMKQLRHLRLDVNCLTELPSSM
VQLDRLEELCLTSNFFATFPDFAMKMAGLKKLLLGNNQLKKLPYSVGFLT
SLKTLQLYNNPLADPPAELLLLGMGAMLWECRKRHWMQVRGPPPVVRVHG
FGIEEEKLELQPEFDRKLAKRIKMAGRSGELNFMMEGLTYFPMGVFQEEI
GRKLKSLRLDSNDFSKATIVFRHTWQDLDQVTHSVSVGYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt