Ec-00_001020.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_001020.1
Unique NameEc-00_001020.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length238
Homology
BLAST of Ec-00_001020.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 494 bits (1271), Expect = 6.760e-177
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MLAPSDSFWLLPAAPSGCWLLFRSRKTLTPCYPSPLPIDTSLSINRPRVLLFASPPSSQSSQSPRRCACVLCVFPTTHTTRQVPHSPPPRPAGTSRIALLQRASHLYAVLSLWRHRGIKMADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
            MLAPSDSFWLLPAAPSGCWLLFRSRKTLTPCYPSPLPIDTSLSINRPRVLLFASPPSSQSSQSPRRCACVLCVFPTTHTTRQVPHSPPPRPAGTSRIALLQRASHLYAVLSLWRHRGIKMADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct:    1 MLAPSDSFWLLPAAPSGCWLLFRSRKTLTPCYPSPLPIDTSLSINRPRVLLFASPPSSQSSQSPRRCACVLCVFPTTHTTRQVPHSPPPRPAGTSRIALLQRASHLYAVLSLWRHRGIKMADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.180e-49
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0
Query:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 236
            MRFC ECNNI+HPKEN+T R L Y+CNRC Y E+A   SCVY NNL+ T   KLDIV  DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+  CG KWV
Sbjct:    1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.010e-32
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 0
Query:  125 RFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 236
            RFC +C N+  P+E +T R LM +C  C YEE A S   VY N +      +LDI+  ++ DDPTLQRS + +CE CNY+EAV FQA+ G  ++SLSLIFVC N  C HKW+
Sbjct:   34 RFCPQCGNMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG)

HSP 1 Score: 118 bits (295), Expect = 2.270e-30
Identity = 53/114 (46.49%), Postives = 82/114 (71.93%), Query Frame = 0
Query:  123 TMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 236
            + ++CSECNN+++P+E+KT+RKL+++C  C +EEDA + +CVYR+ ++  A ++  +V TD+  DPTL R+  A C +C Y EAVFFQ+        ++L +VC NRACGH+WV
Sbjct:    3 SFKYCSECNNMLYPREDKTNRKLLFACRNCHFEEDADN-NCVYRHEIVH-APSEQTMVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQSAARRADTKMTLFYVCCNRACGHRWV 113          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A843UFX2_COLES (TFIIS-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UFX2_COLES)

HSP 1 Score: 121 bits (303), Expect = 4.640e-30
Identity = 78/202 (38.61%), Postives = 109/202 (53.96%), Query Frame = 0
Query:   36 LPIDTSLSINRPRVLLFASPPSSQSSQSPRRCACVLCVFPTTHTTRQVPHSPPPRPAGTSRIALL--QRASHLYAVLSLWRHRGIKMADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 235
            +P   S  I  P V    SP S+    SP   A +   FPT           P  PA T+  A    + AS L  +LS           TM+FC ECNNI++PKE++  + L+Y+C  C ++E A + +CVYRN +  + G +  ++Q DV  DPTL R+KN  C KCN+ EAVFFQA    + + ++L FVC N +CGH+W
Sbjct:   50 VPFRLSARIPSPVVTDRLSPLSAGDVASPPVSASLS--FPTLLPPSSTQEFFPGAPAATAATATFGHREASSLSCMLS--------NMSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKNVRCAKCNHPEAVFFQAAARGE-EGMTLFFVCCNPSCGHRW 238          
BLAST of Ec-00_001020.1 vs. uniprot
Match: K0THW0_THAOC (TFIIS-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THW0_THAOC)

HSP 1 Score: 118 bits (295), Expect = 1.350e-29
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 0
Query:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 237
            MRFC   +++++PKEN ++RKL+Y+C  C+Y E A +G  +Y+N L    GN L  V  DV DDPTL RS+NA C KC ++EAV+FQ+D    +S+SL+LIFVC N  CG+KWV+
Sbjct:   65 MRFCPHDSSMLYPKENPSERKLVYACRLCRYTEYA-AGQLIYKNVLKKEVGNILHTVPADVSDDPTLPRSQNAHCGKCGHSEAVYFQSDTSDVRSESLALIFVCCN--CGYKWVA 176          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC)

HSP 1 Score: 115 bits (287), Expect = 3.590e-29
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 235
            M+FC ECNNI++PKE+K  + L+++C  C YEE A S  CVYRN +    G +  I+Q DV +DPTL R+K+  C KC++ EAVFFQA    + + ++L FVC N ACG++W
Sbjct:    4 MKFCRECNNILYPKEDKQKKILLFACRNCDYEEVADS-FCVYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQASSRGE-EGMTLFFVCCNPACGYRW 112          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A8H7VS23_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VS23_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 7.160e-29
Identity = 52/113 (46.02%), Postives = 78/113 (69.03%), Query Frame = 0
Query:  123 TMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 235
            T ++C +CNN+++P+E+KT+R+L+++C  C+YEEDA +  CVYR+ +I  A  +  IV +D+  DPTL R+ N ICEKC   EAVFFQ+        ++L +VC NR C H+W
Sbjct:    3 TFKYCLDCNNLLYPREDKTNRRLLFACRNCQYEEDADN-LCVYRHEIIHAASEQTMIV-SDLSADPTLPRA-NVICEKCGSQEAVFFQSTSRRADAKMTLFYVCGNRNCSHRW 112          
BLAST of Ec-00_001020.1 vs. uniprot
Match: W7T555_9STRA (Dna-directed rna polymerase ii kDa polypeptide n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T555_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.640e-28
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 0
Query:  123 TMRFCSECNNIMHPKENKTDRKLMYSCN--RCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 235
            TM+FC  CN I++PKE+K +RKL+Y C   RC +EEDA     V+RN +I T    LD V + V +DPTLQRS  A C  C+Y+EAV  Q+ +  KS  L+LIFVC N  CGHKW
Sbjct:   54 TMKFCPNCNFILYPKEDKDERKLVYYCRSPRCDHEEDAPD-PYVFRNQVIKTRTVNLDHVLSAVANDPTLQRS-TADCPLCHYHEAVLIQSTQNVKSNKLTLIFVCCNPNCGHKW 166          
BLAST of Ec-00_001020.1 vs. uniprot
Match: A0A8B8MT71_9MYRT (DNA-directed RNA polymerase subunit n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8MT71_9MYRT)

HSP 1 Score: 112 bits (281), Expect = 4.930e-28
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 0
Query:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
            +RFC ECNN+++PKE+K  RKL+YSC  C ++ +A + +CVY N  IT   ++L  + +DV+ DPTL R+K+  C KC++ EAVFFQ         + L +VCTN  C HKW++
Sbjct:   19 IRFCHECNNMLYPKEDKEQRKLLYSCRNCDWKTNADN-NCVYVNK-ITHEVDELARIVSDVIHDPTLPRTKDHPCPKCHHKEAVFFQGQSRRAEDDMRLYYVCTNSRCTHKWIA 130          
The following BLAST results are available for this feature:
BLAST of Ec-00_001020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI6.760e-177100.00TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA4.180e-4969.91DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S3NJ32_9STRA3.010e-3250.89Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8H7UCI9_9FUNG2.270e-3046.49DNA-directed RNA polymerase subunit n=2 Tax=Umbelo... [more]
A0A843UFX2_COLES4.640e-3038.61TFIIS-type domain-containing protein n=1 Tax=Coloc... [more]
K0THW0_THAOC1.350e-2951.30TFIIS-type domain-containing protein n=1 Tax=Thala... [more]
A0A8B7CCB1_PHODC3.590e-2949.11DNA-directed RNA polymerase subunit n=3 Tax=Arecac... [more]
A0A8H7VS23_9FUNG7.160e-2946.02DNA-directed RNA polymerase subunit n=1 Tax=Mucor ... [more]
W7T555_9STRA3.640e-2852.17Dna-directed rna polymerase ii kDa polypeptide n=1... [more]
A0A8B8MT71_9MYRT4.930e-2845.61DNA-directed RNA polymerase subunit n=1 Tax=Rhodam... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 125..180
e-value: 3.5E-10
score: 49.8
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 124..159
e-value: 7.7E-9
score: 35.3
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 196..237
e-value: 0.0023
score: 21.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 197..235
e-value: 6.1E-5
score: 22.8
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 194..236
score: 9.338
NoneNo IPR availableGENE3D2.20.25.10coord: 121..167
e-value: 3.3E-18
score: 66.7
NoneNo IPR availableGENE3D2.20.25.10coord: 168..237
e-value: 9.6E-21
score: 75.1
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 120..236
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 120..236
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 175..235
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 123..167
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 126..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1324545..1339137 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001020.1Ec-00_001020.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 1323457..1339137 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_001020.1 ID=Ec-00_001020.1|Name=Ec-00_001020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=238bp
MLAPSDSFWLLPAAPSGCWLLFRSRKTLTPCYPSPLPIDTSLSINRPRVL
LFASPPSSQSSQSPRRCACVLCVFPTTHTTRQVPHSPPPRPAGTSRIALL
QRASHLYAVLSLWRHRGIKMADTMRFCSECNNIMHPKENKTDRKLMYSCN
RCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEK
CNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
IPR019761DNA-dir_RNA_pol-M_15_CS