Ec-00_000840.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_000840.1
Unique NameEc-00_000840.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length70
Homology
[Close]
BLAST of Ec-00_000840.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.600e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 69
            MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:  302 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
[Close]
BLAST of Ec-00_000840.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.130e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    2 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 69
            RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:  235 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
[Close]
BLAST of Ec-00_000840.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.370e-26
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:   21 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 69
            CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51
The following BLAST results are available for this feature:
BLAST of Ec-00_000840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY3_ECTSI1.600e-37100.00S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI2.130e-37100.00S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
D7FIU8_ECTSI9.370e-26100.00Ribosomal_S5_C domain-containing protein n=1 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 1..62
e-value: 2.0E-11
score: 45.3
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 1..53
e-value: 4.1E-12
score: 45.4
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1080913..1081460 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000840.1Ec-00_000840.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 1080907..1082117 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_000840.1 ID=Ec-00_000840.1|Name=Ec-00_000840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=70bp
MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIA
RGRGKRILSLQREMAGRFA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR005324Ribosomal_S5_C
IPR020568Ribosomal_S5_D2-typ_fold