Ec-00_000840.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000840.1
Unique NameEc-00_000840.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length70
Homology
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BLAST of Ec-00_000840.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.730e-36
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:    3 GMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 212
            GMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:  301 GMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
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BLAST of Ec-00_000840.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.850e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 3 
Query:    9 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 212
            RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:  235 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
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BLAST of Ec-00_000840.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.990e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3 
Query:   66 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 212
            CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51
The following BLAST results are available for this feature:
BLAST of Ec-00_000840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY3_ECTSI5.730e-36100.00S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI3.850e-35100.00S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
D7FIU8_ECTSI6.990e-24100.00Ribosomal_S5_C domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1080907..1082117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog2880.D7FTY3
Preferred nameMRPS5
Length873
KEGG koko:K02988,ko:K14026
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG ModuleM00178,M00179,M00403
Hectar predicted targeting categoryother localisation
Gene idEc-00_000840.1
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG2646@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000840Ec-00_000840Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1080907..1082117 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000840.1.1Ec-00_000840.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1080907..1080972 +
Ec-00_000840.1.2Ec-00_000840.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1081311..1082117 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008405UTR:Ec-00_000840.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1080907..1080912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000840.1CDS:Ec-00_000840.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1080913..1080972 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008403UTR:Ec-00_000840.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1081461..1082117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000840.1Ec-00_000840.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1080913..1081460 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000840.1 ID=Ec-00_000840.1|Name=Ec-00_000840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=70bp
MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIA
RGRGKRILSLQREMAGRFA*
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spliced messenger RNA

>Ec-00_000840.1 ID=Ec-00_000840.1|Name=Ec-00_000840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=873bp|location=Sequence derived from alignment at chr_00:1080907..1082117+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCTGGCATGAGAGCGGGCAAGCTGTCGCGGGACATCTTGTACAACATGGG
CATCACGGATGGCGCGTGCAAGATCATCGGAAGGCGCAACAAGTACTCCA
TGATCTACGCCATGTTCGACGCCCTCGCCAAGCACCGTGGAATCGAGAGC
ATAGCGAGGGGGCGGGGCAAGCGCATCTTGTCTCTCCAGCGAGAAATGGC
AGGGCGGTTTGCCTGAGTAGACGTGACCATAACGTGCCCTTGGCGAATCG
TATCTGTTTTGTTCCGATGTGTTGAGTCAGCAGAGACCGGCTTGTGAAGG
TTGATTTGCTATGTAGGGGCGTAAAGTACTGCGAGTGTTGGAGGCGTCAT
CAACGACAAGAGCAACGTTCGAAAGTCGCTGAAGTGGAAGCATGATGCAC
ACCGTCAAGTTCTGGTGCATTTGTTTTCGTCATGTCAGCGTGAGCAGAGT
GAGCGAAGCAGCAATCAACAGGACTCATTTGAGCCTTGGGTAGTTAGTGC
CTTTGGGACCGTTATATTTGATTGCATTCATGTGTCCTCTCCCGCCGTGA
CCGAGCGTGGTTGGAACCACCCAATACGCTGCCCGTCACTACAAAGCATA
CATGTACAAGACTTTTGGGCAGCTTACGCTGAGAGAAGCGTTCCGCAAGA
AGCTTGTTATCGGCGTTGTTGTATGGCCGTCTTGTTGGTCTACTTGTCCT
TGCTCTTGCTTACGTACGGTAGTCTGTTGCGACACCGAAGGGGTGCGAAG
GGATGCGTTCGCATGGGGTCGACGAACTGGACACGCGCACACTTCTTGGC
GTGTATAACGGGTTGTTGGTGGGCAGGCGAACGTTATTGTGAAAATGGGT
TGATATGTTGTGTGTAGTTGAAT
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protein sequence of Ec-00_000840.1

>Ec-00_000840.1 ID=Ec-00_000840.1|Name=Ec-00_000840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=70bp
MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIA
RGRGKRILSLQREMAGRFA*
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mRNA from alignment at chr_00:1080907..1082117+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000840.1 ID=Ec-00_000840.1|Name=Ec-00_000840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1211bp|location=Sequence derived from alignment at chr_00:1080907..1082117+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCTGGCATGAGAGCGGGCAAGCTGTCGCGGGACATCTTGTACAACATGGG
CATCACGGATGGCGCGGTATGTGATGTTGGGTGTGTGTGCTGTTTCCGTC
ATTTCCGGAGTCTACCGTTGGAAGGGACGCCGTTGTCGGTTCGGTCATAT
GTTCTGGGTTTGGTTTGCAGACCTCCAGTCTTGACCAAGCCCAAAATATG
GCTAATTTCGCGCTTTTAAAACAAACCACGATCGAGAGCATACTGTTGGG
GTCTTGGCACTCTGTATGTTTATTGTCGTAGCTTTCAGCTTTGTCTCATC
GCGTTTCACGTTTCTGCCGAGATGCACCTCAGAGAGCTTTTCACATACCC
GCGTTTCTGAGGCCTATGGTTCACTCTCCGCCCAACCCGCCATTTTTCAT
GCAGTGCAAGATCATCGGAAGGCGCAACAAGTACTCCATGATCTACGCCA
TGTTCGACGCCCTCGCCAAGCACCGTGGAATCGAGAGCATAGCGAGGGGG
CGGGGCAAGCGCATCTTGTCTCTCCAGCGAGAAATGGCAGGGCGGTTTGC
CTGAGTAGACGTGACCATAACGTGCCCTTGGCGAATCGTATCTGTTTTGT
TCCGATGTGTTGAGTCAGCAGAGACCGGCTTGTGAAGGTTGATTTGCTAT
GTAGGGGCGTAAAGTACTGCGAGTGTTGGAGGCGTCATCAACGACAAGAG
CAACGTTCGAAAGTCGCTGAAGTGGAAGCATGATGCACACCGTCAAGTTC
TGGTGCATTTGTTTTCGTCATGTCAGCGTGAGCAGAGTGAGCGAAGCAGC
AATCAACAGGACTCATTTGAGCCTTGGGTAGTTAGTGCCTTTGGGACCGT
TATATTTGATTGCATTCATGTGTCCTCTCCCGCCGTGACCGAGCGTGGTT
GGAACCACCCAATACGCTGCCCGTCACTACAAAGCATACATGTACAAGAC
TTTTGGGCAGCTTACGCTGAGAGAAGCGTTCCGCAAGAAGCTTGTTATCG
GCGTTGTTGTATGGCCGTCTTGTTGGTCTACTTGTCCTTGCTCTTGCTTA
CGTACGGTAGTCTGTTGCGACACCGAAGGGGTGCGAAGGGATGCGTTCGC
ATGGGGTCGACGAACTGGACACGCGCACACTTCTTGGCGTGTATAACGGG
TTGTTGGTGGGCAGGCGAACGTTATTGTGAAAATGGGTTGATATGTTGTG
TGTAGTTGAAT
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Coding sequence (CDS) from alignment at chr_00:1080907..1082117+

>Ec-00_000840.1 ID=Ec-00_000840.1|Name=Ec-00_000840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=210bp|location=Sequence derived from alignment at chr_00:1080907..1082117+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAGCGGGCAAGCTGTCGCGGGACATCTTGTACAACATGGGCATCAC
GGATGGCGCGTGCAAGATCATCGGAAGGCGCAACAAGTACTCCATGATCT
ACGCCATGTTCGACGCCCTCGCCAAGCACCGTGGAATCGAGAGCATAGCG
AGGGGGCGGGGCAAGCGCATCTTGTCTCTCCAGCGAGAAATGGCAGGGCG
GTTTGCCTGA
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Synonyms
The feature 'Ec-00_000840.1' has the following synonyms
Synonym
Esi1237_0001
Esi_1237_0001