Ec-00_000410.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_000410.1
Unique NameEc-00_000410.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length221
Homology
BLAST of Ec-00_000410.1 vs. uniprot
Match: D7FHU3_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU3_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 1.060e-142
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MQAAAVAASPSPMEEEKKXXXXXGXXXGEMKVLEVKVEQGSEDKGKEAETAAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTSTNHLCCTWIRGQRERCGGNERGRT 220
            MQAAAVAASPSPMEEEKKXXXXXGXXXGEMKVLEVKVEQGSEDKGKEAETAAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTSTNHLCCTWIRGQRERCGGNERGRT
Sbjct:    1 MQAAAVAASPSPMEEEKKXXXXXGXXXGEMKVLEVKVEQGSEDKGKEAETAAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTSTNHLCCTWIRGQRERCGGNERGRT 220          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A6H5JNF3_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.120e-32
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = 0
Query:   52 AETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIG 136
            AETAALKMLEFYFGDSNFGWDRFMQNKAGKMGE LMDISVLMTFNKLKNIVKKADLSPEE QAL++ +  A     VS    Q G
Sbjct:  225 AETAALKMLEFYFGDSNFGWDRFMQNKAGKMGEKLMDISVLMTFNKLKNIVKKADLSPEEAQALVSYVQTAPLHQEVSSSFGQAG 309          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A6J1BRF4_MOMCH (la protein 1 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1BRF4_MOMCH)

HSP 1 Score: 75.9 bits (185), Expect = 2.130e-12
Identity = 43/135 (31.85%), Postives = 78/135 (57.78%), Query Frame = 0
Query:   57 LKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSP----EEGQALIARMGEASPSLRVSEDKKQIGRAAAMT--EEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKI 185
            L+ +EFYF DSN   D F++    +  + ++++S++ +F +++N +K  D+ P    E+    +A    +SP+++VSED K+IGR   ++  EE  ++   RT+     P E ++K+EDVE  F    K N V++
Sbjct:   15 LRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAAS--PFEYNVKLEDVEAFFGQVAKVNSVRL 147          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A4S8JI98_MUSBA (Uncharacterized protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8JI98_MUSBA)

HSP 1 Score: 72.8 bits (177), Expect = 2.410e-11
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 0
Query:   57 LKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKN-----IVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMT--EEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTSTNHLCCT 203
            L+ +EFYF DSN   D F++       + L+ +++L +F ++KN        K +  PEE    +A +  +SPSLRVSED K++GR+  M   EE  ++  +RT+     P +  +K E VE  F+  GK N V++ +   +K      H C T
Sbjct:   15 LRQVEFYFSDSNLPRDNFLKKTVQDSEDGLVSLALLCSFTRMKNHLGLSAAMKPEEIPEETVLSVADVLRSSPSLRVSEDGKRVGRSTEMMKPEEVIEQVDSRTIAVTPLPYD--VKSEVVESFFALHGKVNSVRLPRHVSDK-----RHFCGT 161          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A482RX93_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX93_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 1.990e-10
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 0
Query:   55 AALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESS-IKIEDVEKLFSDAGKANYVKI 185
            A  K +EFYF DSN+  D F++  A    +  + ISVL+TFN+LKN+            A +A+  E+S ++ +S +K ++ RA  + E    E  +RT+  KGYP +++ + IE + + +S  GK  YVK+
Sbjct:    7 AIRKQVEFYFSDSNYRKDTFLKAAAESDPDGFVAISVLLTFNRLKNLTTDV--------AEVAKAVESSDAVVLSANKDKVKRAEPLPETD--ESASRTLYIKGYPVDNADVTIESIAEQWSPYGKVLYVKM 128          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A7S0SSA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSA1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.860e-10
Identity = 46/145 (31.72%), Postives = 77/145 (53.10%), Query Frame = 0
Query:   53 ETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSI-KIEDVEKLFSDAGKANYVKICKAGGNKLRTS 196
            E+A  K +EFYF DSNF  D F++  A    E  + ISV++TFNKL+N+           +A +A   E S  + + +DK ++ R+  + E+   +   +T+  KG+P E  I  I+++ +LFS  G    V++ +    K + S
Sbjct:    4 ESAIKKQVEFYFSDSNFRKDTFLKAAADSDPEGFVPISVVLTFNKLRNLTTD--------EAAVANAIENSNVVTLDDDKTRVRRSNPLPEDDTSK--PKTLYVKGFPVEEPIVTIDEITELFSVYGDIAIVRLRRDETKKFKGS 138          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A7S3PPI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PPI0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.140e-9
Identity = 43/157 (27.39%), Postives = 86/157 (54.78%), Query Frame = 0
Query:   47 EAETAAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNI------VKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERI--ARTVQTKGYPKESSIKIEDVEKLFS---DAGKANYVKICKAGGNK 192
            +A+  + ++  K LEFYF + N   DRF++ +     ++++DI +L+TFN++K+       V K  L+  E ++++A   +AS  ++V+ED+ ++GR   +  +  +      RT+  +G+P +   K E+V K      D  K +Y+K+ +   N+
Sbjct:   88 DAKKVSMSSIRKQLEFYFSEGNLRRDRFLRERLEAAKDDMVDIDILLTFNRIKDYLGLPKNVPKTSLTTAENRSILADAVKASDVVKVNEDRFRMGRKRRVDMKYERHDFDPKRTIVVEGFPLDC--KFEEVRKAIISVYDESKIDYIKLRRVPENE 242          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A152AA29_9MYCE (Lupus La protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152AA29_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 3.500e-9
Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = 0
Query:   47 EAETAAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTSTNHLCC 202
            E +TA     LK +E+YF DSN+  D+F+  +A K  +  + I V+ +F ++K +         E   LI+   + S  L VSED K + R   + E  G E+   ++ +KG+P +++  IE VE+ F   GK   V+  K   N+ +T    + C
Sbjct:   10 EVDTATINKILKQVEYYFSDSNYPRDKFLNVEAAKHPDQYIGIDVIASFKRMKEL--------SEDLQLISDTLKKSDKLVVSEDGKMVKRVYPIPESIGSEK---SLYSKGWPLDTTT-IEKVEEFFKPYGKVLSVRFRK---NRDKTFKGSMVC 150          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A1X7UCM2_AMPQE (Uncharacterized protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UCM2_AMPQE)

HSP 1 Score: 62.0 bits (149), Expect = 1.100e-7
Identity = 43/143 (30.07%), Postives = 76/143 (53.15%), Query Frame = 0
Query:   53 ETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAA--------MTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICK 187
            E   ++ +EFYFGD N   D+F+QNK  +  +  +++SVL+TF++LK +    D S   G    A     S  L VSED  ++ R ++        ++ E  K+   RT+  KG+PK+S++  +D++      G+   +++ K
Sbjct:   23 EKKIIRQIEFYFGDRNLSRDKFLQNKIKENEDGWVELSVLLTFSRLKAL--STDCSLIAG----ALRKSTSGLLEVSEDGLKVKRKSSDPVPTLSLLSPEDRKDMSNRTLYMKGFPKDSTL--DDIQDFLLPFGETEMIRMKK 157          
BLAST of Ec-00_000410.1 vs. uniprot
Match: A0A024TPS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPS9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.370e-7
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = 0
Query:   52 AETAAL-KMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMT---EEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGG 190
            A+ AA+ K +EFYF DSNF  D+F+Q +  K  +  +  SVL TF KL+ +   A        A++A   E S  + ++ED+  + R  A T   E+A K    RTV   G        I+ V + F DA K  Y +I KA G
Sbjct:    2 ADVAAIQKQVEFYFSDSNFRRDKFLQAETAKNADRFVPFSVLFTFKKLQALTTDA--------AVLASALEKSTVVEMNEDRTALRRIHAATLSDEDASK----RTVAFSGLGVLPPT-IDQVNEAF-DADKVAYTRIVKAAG 130          
The following BLAST results are available for this feature:
BLAST of Ec-00_000410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHU3_ECTSI1.060e-142100.00HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JNF3_9PHAE1.120e-3278.82HTH La-type RNA-binding domain-containing protein ... [more]
A0A6J1BRF4_MOMCH2.130e-1231.85la protein 1 n=1 Tax=Momordica charantia TaxID=367... [more]
A0A4S8JI98_MUSBA2.410e-1133.12Uncharacterized protein n=2 Tax=Musa TaxID=4640 Re... [more]
A0A482RX93_9ARCH1.990e-1034.85Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S0SSA1_9STRA3.860e-1031.72Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3PPI0_9STRA3.140e-927.39Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A152AA29_9MYCE3.500e-930.77Lupus La protein n=1 Tax=Tieghemostelium lacteum T... [more]
A0A1X7UCM2_AMPQE1.100e-730.07Uncharacterized protein n=3 Tax=Amphimedon queensl... [more]
A0A024TPS9_9STRA7.370e-735.66Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 85..100
score: 23.86
coord: 59..76
score: 46.46
coord: 146..162
score: 32.09
IPR006630La-type HTH domainSMARTSM00715lacoord: 50..138
e-value: 4.0E-6
score: 24.4
IPR006630La-type HTH domainPFAMPF05383Lacoord: 59..103
e-value: 9.1E-10
score: 38.5
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 46..145
score: 15.629
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 48..145
e-value: 1.1E-17
score: 65.6
NoneNo IPR availablePANTHERPTHR22792:SF123LA PROTEIN 1-RELATEDcoord: 55..187
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 55..187
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 55..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:629030..633122 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000410.1Ec-00_000410.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 629030..633122 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_000410.1 ID=Ec-00_000410.1|Name=Ec-00_000410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=221bp
MQAAAVAASPSPMEEEKKEEEEKGEEKGEMKVLEVKVEQGSEDKGKEAET
AAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKN
IVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERI
ARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTSTNHL
CCTWIRGQRERCGGNERGRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002344Lupus_La
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf