Ec-sdr_f_000100.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-sdr_f_000100.1
Unique NameEc-sdr_f_000100.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length119
Homology
The following BLAST results are available for this feature:
BLAST of Ec-sdr_f_000100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sdr_fcontigsdr_f:392289..393277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length357
Hectar predicted targeting categoryother localisation
Gene idEc-sdr_f_000100.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000100Ec-sdr_f_000100Ectocarpus species7 Ec32 male_plus_femaleSDRgenesdr_f 392289..393277 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000100.1.1Ec-sdr_f_000100.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 392289..392434 +
Ec-sdr_f_000100.1.2Ec-sdr_f_000100.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 392843..392933 +
Ec-sdr_f_000100.1.3Ec-sdr_f_000100.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 393158..393277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000100.1CDS:Ec-sdr_f_000100.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSsdr_f 392289..392434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000100.1Ec-sdr_f_000100.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidesdr_f 392289..393277 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-sdr_f_000100.1 ID=Ec-sdr_f_000100.1|Name=Ec-sdr_f_000100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=119bp
MHHRGPSGQTALHFAACGGGALVARTLVAAGADPAALDDAGNTPVDVARK
CSGRATLDVLTLHRERMTPASVLVGYIAEDEIGTSSWVRTPRTGVGLRRP
SCVRYQASTKEASQMVDI*
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spliced messenger RNA

>Ec-sdr_f_000100.1 ID=Ec-sdr_f_000100.1|Name=Ec-sdr_f_000100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=357bp|location=Sequence derived from alignment at sdr_f:392289..393277+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACCGGGGGCCGTCTGGTCAAACAGCGCTTCACTTTGCAGCATG
TGGTGGCGGAGCTCTTGTTGCCAGGACCCTTGTTGCTGCCGGAGCTGACC
CGGCAGCGCTTGACGATGCTGGGAACACCCCGGTGGATGTCGCCAGAAAA
TGTAGTGGAAGGGCAACGCTGGACGTGCTTACTCTACATCGTGAACGTAT
GACGCCAGCCTCCGTCCTTGTCGGATATATTGCAGAGGACGAGATCGGGA
CCAGCTCTTGGGTGAGAACTCCTCGCACTGGCGTTGGCTTGAGGAGACCA
TCGTGTGTCCGCTATCAGGCTAGCACTAAGGAGGCTTCCCAGATGGTGGA
CATCTAG
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protein sequence of Ec-sdr_f_000100.1

>Ec-sdr_f_000100.1 ID=Ec-sdr_f_000100.1|Name=Ec-sdr_f_000100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=119bp
MHHRGPSGQTALHFAACGGGALVARTLVAAGADPAALDDAGNTPVDVARK
CSGRATLDVLTLHRERMTPASVLVGYIAEDEIGTSSWVRTPRTGVGLRRP
SCVRYQASTKEASQMVDI*
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mRNA from alignment at sdr_f:392289..393277+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-sdr_f_000100.1 ID=Ec-sdr_f_000100.1|Name=Ec-sdr_f_000100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=989bp|location=Sequence derived from alignment at sdr_f:392289..393277+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACCACCGGGGGCCGTCTGGTCAAACAGCGCTTCACTTTGCAGCATG
TGGTGGCGGAGCTCTTGTTGCCAGGACCCTTGTTGCTGCCGGAGCTGACC
CGGCAGCGCTTGACGATGCTGGGAACACCCCGGTGGATGTCGCCAGGTTA
TGTATTTCGTCCAAAAATCATCCAGTTGGCTGTCATCACGATAAATGGCG
TATTTCGCGGTATTGCACACCGGCCAGAACGTCATATAAGAAAAAATAGT
GGTGCTTACAATATTCGTTCTCATGTTCTCATTCATTTTGGGTAATGCTG
TTGTTCCACCGGTGGAGTAAATTCGTATTTGCTCCACCAGGCACACCTTC
CAATTATCATGCATGCAACAGAGATTTAGACCACAAGCACCAGTACCCTT
TGTGTGGAAGTTGGCAGTAACCCCTTTTGTATTGCTGAGGGTCGATTGCT
CGCCAGCTCAACCCCATATTTGACGTCCCTAGCTTATCTCGCAGCATTGA
TTGATCTCGCACCGCCTTCCTCCTCGGTTCTTCATGATTATTCTTGCCTT
CCAGAAAATGTAGTGGAAGGGCAACGCTGGACGTGCTTACTCTACATCGT
GAACGTATGACGCCAGCCTCCGTCCTTGTCGGATATATTGCAGAGGTAAA
GACTGTTGTTGCAAGTGCTGGACCCGCAGACATCATTGTCAGTCTAGCAA
CGAGTGAAACGTCCTGTGCATGCGTGCTTTCCCGCCACAGCTTCGTGTGG
TACAGAGAGAGGGGCGACGGGCACATGCCGCGGACATGACCAAAACACAT
TCACGTTTATTGTTTGACCTCGTGCATGCCGACTCTCTCTCTCCCAATAC
TTATCCTTCGGCATTGTAGGACGAGATCGGGACCAGCTCTTGGGTGAGAA
CTCCTCGCACTGGCGTTGGCTTGAGGAGACCATCGTGTGTCCGCTATCAG
GCTAGCACTAAGGAGGCTTCCCAGATGGTGGACATCTAG
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Coding sequence (CDS) from alignment at sdr_f:392289..393277+

>Ec-sdr_f_000100.1 ID=Ec-sdr_f_000100.1|Name=Ec-sdr_f_000100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=357bp|location=Sequence derived from alignment at sdr_f:392289..393277+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACCACCGGGGGCCGTCTGGTCAAACAGCGCTTCACTTTGCAGCATG
TGGTGGCGGAGCTCTTGTTGCCAGGACCCTTGTTGCTGCCGGAGCTGACC
CGGCAGCGCTTGACGATGCTGGGAACACCCCGGTGGATGTCGCCAGAAAA
TGTAGTGGAAGGGCAACGCTGGACGTGCTTACTCTACATCGTGAACGTAT
GACGCCAGCCTCCGTCCTTGTCGGATATATTGCAGAGGACGAGATCGGGA
CCAGCTCTTGGGTGAGAACTCCTCGCACTGGCGTTGGCTTGAGGAGACCA
TCGTGTGTCCGCTATCAGGCTAGCACTAAGGAGGCTTCCCAGATGGTGGA
CATCTAG
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Synonyms
The feature 'Ec-sdr_f_000100.1' has the following synonyms
Synonym
FeV4scaf19_1