Ec-28_003780.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003780.2
Unique NameEc-28_003780.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length142
Homology
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BLAST of Ec-28_003780.2 vs. uniprot
Match: D8LTK1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 572 bits (1475), Expect = 1.110e-173
Identity = 350/588 (59.52%), Postives = 371/588 (63.10%), Query Frame = 3 
Query:  996 QTGIMKAIEWLANFFKYKEILKTAEILEAQVLAGMDEFIKSIPTQGDIKEYFNEIRQMLQKKTALTSMPKT*ARRTRRRTTARSIPRKT---------SFNTTPSPAPSTSQRAPRMKKGFFGRQR*RRLRQGQHGGQAPVPVRKVQRGPERVYVRARRRFPRCSGASTKAMMDPLKNAANAVRAWLADGGTQYIPVISEIYKLITGRKLKLAKALFFMLAIPVTYASKALLGKWPSELGLIDPAMDTNSSTMAIVEEDVQSSGT-VLQRI*RGAFLAITAARVRLHIEVGGKGIRQGQRDEKERWWALLKVASIVMSGIVIPFQ-------------------------------------------------------------------------------------------------------AVVDVSKVPGQRRFPRGHRVFKIISLAKVIQKLLDRGASMVYVGDYFDKTKNRENKKKTVLKKGDKGLFWFTFALEVGGTVADAALGFSEQGHPHAGGLEHNTPQGGLTPVIVYDACEGIAEIAKGARLMWLAIEFGEGGFQQGTMVFQ----VFTGFSR 2408
            +TGIMKAIEWLANFFKYKEILKTAEILEAQVLAGMDEFIKSIPTQGDIKEYFNEIRQMLQKKT L    +  ++    +      P++          +F+ +  PA               G+       Q  +G        K + G           F     ASTKAMMDPLKNAANAVRAWLADGGTQYIPVISEIYKLITGRKLKLAKALFFMLAIPVTYASKALLGKWPSELGLIDPAMDTNSSTMAIVEEDVQSSGT     + R      +++        G K   +G   +K+ WWALLKVASIVMSGIVIPFQ                                                                                                       AVVDVSKVPGQRRFPRGHRVFKIISLAKVIQKLLDRGASMVYVGDYFDKTKNRENKKKTVLKKGDKGLFWFTFALEVGGTVADAALGFSEQGHPHAGGLEHNTPQGGLTPVIVYDACEGIAEIAKGARLMWLAIEFGEGGFQQGTMVFQ    VF G S+
Sbjct: 1882 KTGIMKAIEWLANFFKYKEILKTAEILEAQVLAGMDEFIKSIPTQGDIKEYFNEIRQMLQKKTGLDLDAQDMSKEDTAQDDREIDPKENFVQHHAESGTFHESAGPADEEEXXXXXXXXXXSGKDSMADKLQYLYG--------KFKEGLNAFMSALAEGFLDVLEASTKAMMDPLKNAANAVRAWLADGGTQYIPVISEIYKLITGRKLKLAKALFFMLAIPVTYASKALLGKWPSELGLIDPAMDTNSSTMAIVEEDVQSSGTGAPAHLTRSLPGDNSSSEFVYTSRSGEKESDKGSETKKKVWWALLKVASIVMSGIVIPFQGDGKFAQLIGFDAVKRQRCSSSSILRPIATAYKTTWLERTSCSFSRVLYGQRPVVPRRCKHRKYSPFFFWVRVEMPLSNRMHVCANHLTAVLGCVHCLLFRIAAVVDVSKVPGQRRFPRGHRVFKIISLAKVIQKLLDRGASMVYVGDYFDKTKNRENKKKTVLKKGDKGLFWFTFALEVGGTVADAALGFSEQGHPHAGGLEHNTPQGGLTPVIVYDACEGIAEIAKGARLMWLAIEFGEGGFQQGTMVFQGVHGVFKGASQ 2461
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BLAST of Ec-28_003780.2 vs. uniprot
Match: D7G061_ECTSI (Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 3.420e-59
Identity = 176/512 (34.38%), Postives = 245/512 (47.85%), Query Frame = 3 
Query:  996 QTGIMKAIEWLANFFKYKEILKTAEILEAQVLAGMDEFIKSIPTQGDIKEYFNEIRQMLQKKTALTSMPKT*ARRTRRRTTARSIPRKT---------SFNTTPSPAPSTSQRAPRMKKGFFGRQR*RRLRQGQHGGQAPVPVR------KVQRGPERVYVRARRRFPRCSGASTKAMMDPLKNAANAVRAWLADGGTQYIPVISEIYKLITGRKLKLAKALFFMLAIPVTYASKALLGKWPSELGLIDPAMDTNSSTMAIVEEDVQSSGTVLQRI*RGAFLAITAARVRLHIEVGGKGIRQGQRDEKERWWALLKVASIVMSGIVIPFQAVVDVSKVP-GQR-----RFPRGHRVFKIISLAKVIQKLLDRGASMVYVGDYFDKTKNRENKKKTVLKKGDKGLFWFTFALEVGGTVADAALGFSEQGHPHAGGLEH-NTPQGGLTP------VIVYDACEGIAEIAKGARLMWLAIEFGEGGFQQGTMVFQ----VFTGFSREPLNWPRRI 2435
            +TGIMKAIEWLA+FFKYKEILKTAEILEA  + G+D+FI +IP++  +KE+FN++R ML++KT L    +  +            P++          +F    +PA +                           G   V  +      K++ G                   T+ M+  LK  A   R WLADGG  YIP+ISEIYKLITGRKLKLAKALFF+ AIPVTY +KA+LGKWPS++  +D       +T++I  +   S+                                                             A++D++K+P G R     RF + H +FKIIS  + +QK+L+  ++MVYVGDYF   K       T LK+ DK  F F    +  G +    +   +   P AGGL + N  +GG TP       I++D  +GIAEIAKG+RL+ LA E  EGG Q+ TM FQ    +F G S+    + ++I
Sbjct: 1858 KTGIMKAIEWLASFFKYKEILKTAEILEAGAIYGIDQFIATIPSEDAVKEFFNDLRLMLERKTGLDLDAQDMSTEDTTPDDREVDPKENFVQHHSTCGTFEGAGTPADAKDDXXXXXXXXXXXX--------XXDPGMDTVAEKLNYLYEKLKEGLNAFMSALAEGIVDLLEGGTQLMVKILKFVAKKFRDWLADGGPIYIPIISEIYKLITGRKLKLAKALFFIFAIPVTYMAKAVLGKWPSQMVSVDQLTGAKGNTLSIAGQAPDSTDA-----------------------------------------------------------AMIDITKIPAGDRNFLTNRFKKSHPIFKIISYGRALQKILNLASTMVYVGDYFTGPK-------TPLKRKDKAFFSFLTMFDAAGVLVSLKVDGGQASEPGAGGLVNMNATEGGQTPNNATVPAIIFDMADGIAEIAKGSRLIALANELDEGGRQERTMKFQGSHGIFKGASQMATAFGKQI 2295
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BLAST of Ec-28_003780.2 vs. uniprot
Match: A0A6H5JIJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.080e-22
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 3 
Query: 1491 PLKNAANAVRAWLADGGTQYIPVISEIYKLITGRKLKLAKALFFMLAIPVTYASKALLGK 1670
            PLKNAANAVRA LADGGTQYIP ISEI KLITGRKLKLAKALFFMLAIPVT+AS+ALLGK
Sbjct:  112 PLKNAANAVRACLADGGTQYIPAISEICKLITGRKLKLAKALFFMLAIPVTFASEALLGK 171
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BLAST of Ec-28_003780.2 vs. uniprot
Match: D7G9J0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J0_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.370e-16
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:   28 MEGETTTRRPIINSTAECLTEPRWEEARKKAERTALEAARLVKAAQTAAFELKAVEEAEXXXXXXXXXXXXXXXIDGDDGAY 273
            ME    TRRPI  STAEC+ EP WE  R++A +TA+EAARLVKAAQT+AFELKA+EE EXXXXXXXXXXXXX  IDGDDGAY
Sbjct:    1 MEAGIPTRRPITGSTAECVKEPPWEAVRQEAAKTAMEAARLVKAAQTSAFELKAIEEVEXXXXXXXXXXXXXDHIDGDDGAY 82
[Close]
BLAST of Ec-28_003780.2 vs. uniprot
Match: D7FGP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.760e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  850 GAEEGGQESVKVVKKGVDFVVKIGKVVYHFVETKLEQLIKALDWLWDKIK 999
            G ++  ++   VV+K V FVVKIGK VYHFVET LEQL+K LDWLWDKIK
Sbjct:   21 GLKKVARKXXXVVEKEVAFVVKIGKAVYHFVETTLEQLVKVLDWLWDKIK 70
The following BLAST results are available for this feature:
BLAST of Ec-28_003780.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTK1_ECTSI1.110e-17359.52Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G061_ECTSI3.420e-5934.38Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6H5JIJ4_9PHAE2.080e-2291.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9J0_ECTSI3.370e-1674.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGP7_ECTSI8.760e-1166.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3622342..3631206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length3119
Hectar predicted targeting categoryother localisation
Gene idEc-28_003780.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003780Ec-28_003780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3622342..3648366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003780.2Ec-28_003780.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3623390..3624814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003780.2.17Ec-28_003780.2.17Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3622342..3623059 -
Ec-28_003780.2.16Ec-28_003780.2.16Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3623307..3623428 -
Ec-28_003780.2.15Ec-28_003780.2.15Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3623832..3623969 -
Ec-28_003780.2.14Ec-28_003780.2.14Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3624257..3624443 -
Ec-28_003780.2.13Ec-28_003780.2.13Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3624753..3624883 -
Ec-28_003780.2.12Ec-28_003780.2.12Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3625215..3625263 -
Ec-28_003780.2.11Ec-28_003780.2.11Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3625546..3625843 -
Ec-28_003780.2.10Ec-28_003780.2.10Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3626133..3626275 -
Ec-28_003780.2.9Ec-28_003780.2.9Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3626610..3626752 -
Ec-28_003780.2.8Ec-28_003780.2.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3627269..3627453 -
Ec-28_003780.2.7Ec-28_003780.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3627873..3627992 -
Ec-28_003780.2.6Ec-28_003780.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3628683..3628733 -
Ec-28_003780.2.5Ec-28_003780.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3629033..3629119 -
Ec-28_003780.2.4Ec-28_003780.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3629468..3629641 -
Ec-28_003780.2.3Ec-28_003780.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3630061..3630213 -
Ec-28_003780.2.2Ec-28_003780.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3630604..3630748 -
Ec-28_003780.2.1Ec-28_003780.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3630932..3631206 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0037803UTR:Ec-28_003780.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 3622342..3623059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003780.2CDS:Ec-28_003780.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3623390..3623428 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0037805UTR:Ec-28_003780.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 3624815..3624883 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003780.2 ID=Ec-28_003780.2|Name=Ec-28_003780.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=142bp
MVGPAEGCLHRHVWHRNTFPSGGGRQQGSRTETLPQGPQGIQDNFFGQSN
PEAPGPRSEHGLRWRLLRQDKKPGEQEENCPEEGRQGALLVYLRTRGGRH
RRRRRFGVLRTRAPSRRRSGAQYSAGRAHAGNCLRCMRRYR*
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spliced messenger RNA

>Ec-28_003780.2 ID=Ec-28_003780.2|Name=Ec-28_003780.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3119bp|location=Sequence derived from alignment at chr_28:3622342..3631206- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCAGTGGACTGTTTGGCTCTGAGGCCATGGAGGGTGAGACAACAACAAG
GCGCCCGATCATCAACAGTACCGCTGAGTGCCTGACGGAGCCGAGGTGGG
AGGAAGCAAGGAAGAAAGCTGAGAGAACGGCCTTGGAGGCCGCCCGGCTT
GTGAAGGCAGCCCAAACGGCGGCCTTTGAACTCAAAGCAGTCGAGGAGGC
GGAGGCCGCAGAAGCTCTAGACTCCGAAGAAGACGAAGGGGAGGATGACA
TCGACGGCGATGACGGTGCCTACGGATCGACAGAACATACCAGCAGAGGT
ATTGGCGGCTGGGTCAAGAAAACAACCAAGAAGGCCAAGTCCGGGGTCCA
GAGTGCGGCCAACAAGACGAAGAAGGCGGCCCAGACGGCCGCCCGAAAAG
CCGAGGAGGCAGCTAAACAGGCGAAGCGGGAGGCGGAGAGAATTGCCAAG
GACGCAGCGCGCAAAGCTGAAGCAGCAGCCCTTCAAGCCAAGAGGGAAGC
GGAGAAGGCTGCAAAGGCCGTGGCTCAAGCCGCCGAACAAACAAAGAAGG
CAGGAGGGCTTGTAGCAAACGAGGTAGCAGACAAGGCGAAGATAGCGGCG
GATGTGGCGAAGCAGGCCGCGGAGGGTGCCGGGAAGCTGGCGGAAGACGC
CGGGAACGAGGTGGGAGATGTGGCGGGTGACATCAAGGACGGAGTCCAGG
ATGCGGCCGGCACCGTGAAGGACGGCATCGTTAACGCGGCCGACAAGGTC
AAGGATGTTGCCAAGGATACCGTCGAGGTCGTGGGTGATGTGACGATGAA
GGTGGTCGAGGTGGTGGAAGAGGTGGTCGTTGAGGTGTGGGAACACACTC
CAGAGGGGCTGAAGAAGGTGGCCAGGAAAGTGTCGAAAGTTGTCAAGAAG
GGGGTGGATTTTGTGGTGAAGATCGGCAAGGTGGTGTATCACTTCGTGGA
AACCAAGCTCGAGCAGCTCATTAAGGCACTCGACTGGCTGTGGGACAAAA
TCAAGACGGGTATCATGAAGGCCATCGAATGGCTCGCCAATTTCTTCAAG
TACAAGGAGATTTTGAAGACCGCCGAGATATTGGAAGCCCAGGTGTTGGC
TGGGATGGACGAGTTCATCAAATCAATTCCCACACAGGGAGACATCAAGG
AATACTTCAACGAAATCCGCCAAATGCTGCAGAAGAAGACCGGCCTTGAC
CTCGATGCCCAAGACATGAGCAAGGAGGACACGGCGCAGGACGACCGCGA
GATCGATCCCAAGGAAAACTTCGTTCAACACCACGCCGAGTCCGGCACCT
TCCACGAGTCAGCGGGCCCCGCGGATGAAGAAGAGGATTCTTCGGACGAC
AGCGATGACGACGACTCCGGCAAGGACAGCATGGCGGACAAGCTCCAGTA
CCTGTACGGAAAGTTCAAAGAGGGCCTGAACGCGTTTATGTCCGCGCTCG
CCGAAGGTTTCCTCGATGTTCTGGAGGCCAGCACCAAGGCAATGATGGAC
CCCCTGAAGAACGCAGCGAACGCGGTCCGTGCCTGGCTCGCCGATGGAGG
CACGCAATACATCCCGGTCATCAGCGAGATCTACAAGCTCATCACGGGGC
GCAAACTCAAGCTTGCGAAAGCGTTGTTCTTCATGCTTGCCATCCCCGTA
ACATACGCCTCCAAGGCACTTCTAGGGAAATGGCCATCGGAGCTGGGCTT
GATAGACCCAGCGATGGACACCAACAGTAGCACTATGGCGATCGTTGAAG
AGGACGTCCAATCTTCTGGCACAGGTGCTCCAGCGCATCTGACGAGGAGC
CTTCCTGGCGATAACAGCAGCAGCGAGTTCGTCTACACATCGAGGTCGGG
GGAAAAGGAATCAGACAAGGGCAGCGAGACGAAAAAGAAAGTATGGTGGG
CCCTGCTGAAGGTTGCCTCCATCGTCATGTCTGGCATCGTAATACCTTTC
CAAGCGGTGGTGGACGTCAGCAAGGTTCCAGGACAGAGACGCTTCCCCAG
GGGCCACAGGGTATTCAAGATAATTTCTTTGGCCAAAGTAATCCAGAAGC
TCCTGGACCGCGGAGCGAGCATGGTCTACGTTGGCGATTACTTCGACAAG
ACAAAAAACCGGGAGAACAAGAAGAAAACTGTCCTGAAGAAGGGCGACAA
GGGGCTCTTCTGGTTTACCTTCGCACTCGAGGTGGGCGGCACCGTCGCCG
ACGCCGCTTTGGGGTTCTCCGAACAAGGGCACCCTCACGCAGGCGGTCTG
GAGCACAATACTCCGCAGGGAGGGCTCACGCCGGTAATTGTTTACGATGC
ATGCGAAGGTATCGCTGAGATCGCGAAGGGGGCAAGGTTGATGTGGCTTG
CAATCGAGTTTGGCGAGGGCGGCTTCCAGCAAGGAACGATGGTGTTTCAA
GGTGTTCACGGGGTTTTCAAGGGAGCCTCTCAACTGGCCAAGGCGTATTC
AAAGTTTCTGAAGGTCCCGCCTAACAAGCCCGAATACAAGATTATGGTCA
TACTTTTTGCAGCCCATATGAAGTACAGGACGAACGTCTGGCCCCTCGGA
ATAGCATCGGTGGCGGTGCAGCTAATAGGTGCTGACAAGGCTGACACGGA
AGACCAAGAGCAGACAAACGACGCGTACTGGACTGCTTGCCATGCGTACC
TGTGAGGTGCCGCGTTCGAATCGGGCGGGGAAGTGCGCTAGGGTGCTGAG
GGGGGCAAGGAGCAAGACACGGAGCTGAAAAGGCGTACCTGACGAGTTGC
TGTTGTTGCTTGGTGTGGCTTTGCGTGTGGCCGTCGAATGGCATGTCGCC
TTCAGGACGGGCTGGTTGGAAAGGCGGGAACCTGTGTACCTCGAGGTAGT
GGAGGTAGAGAAGTGTTTTGTAGGCTTCGATGCCTCCTTGTTCTTGCTTT
CACCAAGGAGTTGTATTCCGTCTGCTTGTTTTCCAGGGAACTGTCTGGAC
AAGTATCTCGCCAGGCGTGTTGCTTGAAGCCCTGGTTTCCCGCGTCTGAG
CGATTGGGTATGTCTTGTCTGCTTCCCATTCTGTACCATCAGATCGAGGA
TGGGACGGTGCTTTCATCGGAATCAGTCCCTATTGATTTGTTGCACTGTT
TTTTTTTCAGCAGTTACCC
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protein sequence of Ec-28_003780.2

>Ec-28_003780.2 ID=Ec-28_003780.2|Name=Ec-28_003780.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=142bp
MVGPAEGCLHRHVWHRNTFPSGGGRQQGSRTETLPQGPQGIQDNFFGQSN
PEAPGPRSEHGLRWRLLRQDKKPGEQEENCPEEGRQGALLVYLRTRGGRH
RRRRRFGVLRTRAPSRRRSGAQYSAGRAHAGNCLRCMRRYR*
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mRNA from alignment at chr_28:3622342..3631206-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003780.2 ID=Ec-28_003780.2|Name=Ec-28_003780.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8865bp|location=Sequence derived from alignment at chr_28:3622342..3631206- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCAGTGGACTGTTTGGCTCTGAGGCCATGGAGGGTGAGACAACAACAAG
GCGCCCGATCATCAACAGTACCGCTGAGTGCCTGACGGAGCCGAGGTGGG
AGGAAGCAAGGAAGAAAGCTGAGAGAACGGCCTTGGAGGCCGCCCGGCTT
GTGAAGGCAGCCCAAACGGCGGCCTTTGAACTCAAAGCAGTCGAGGAGGC
GGAGGCCGCAGAAGCTCTAGACTCCGAAGAAGACGAAGGGGAGGATGACA
TCGACGGCGATGACGGTGCCTACGGGTGAGTTTGGAGATGCCCTCGCACC
CAGCCGCAGCGTGCGCGTTCGGATAAGAATCTAGACTAAGTGCTTCTTCT
TTCGAAAGGTCAAAGGACAGCCACACCCTGTATTGTTCCCCCGATGGGCC
TCTGTTGTTGGTTGTGGTGGCCTGCGTTGACCAATTCCCGTGTAAAACCC
TTGGACAGATCGACAGAACATACCAGCAGAGGTATTGGCGGCTGGGTCAA
GAAAACAACCAAGAAGGCCAAGTCCGGGGTCCAGAGTGCGGCCAACAAGA
CGAAGAAGGCGGCCCAGACGGCCGCCCGAAAAGCCGAGGAGGCAGCTAAA
CAGGCGAGATAACCTGTTTATAGTTGGCTGTTTCTGCATACGTAGCATCT
TATGTTGTTTGTTGATGTTTTTCGTTCTATAATAGAAACCGTTGCGGTCT
CTACTCAGTATCTTCAACAGCCTACCGGTCCAAGTGACGCGGCAGACACC
TTCTGTAGTCACAATGCAACTGCTCAACGTAGGTGCCGAGTAGGTAATCA
CCACGAACGCGGTAATAGAGCACAAACCTAAAACAAAAAGGCATTGGGAG
GACCCCAGCCAGACAAAACTCAGACGTCGTAGGTGACATTTGGTATGGGG
CAAAGGAGATGCATGACTACATGGTTGGACGAGAAGACGTATTACGTAGC
GATAGTGATCATGGTGCGACATGTTTTGATTGGTATCAAGCAGGCGAAGC
GGGAGGCGGAGAGAATTGCCAAGGACGCAGCGCGCAAAGCTGAAGCAGCA
GCCCTTCAAGCCAAGAGGGAAGCGGAGAAGGCTGCAAAGGCCGTGGCTCA
AGCCGCCGAACAAACAAAGAAGGCAGGAGGGCTTGTAGCAAACGAGGTGC
GTGAGACAATCGGCATGTACTGCGACATGATGTACACCACGAGGTCAAAC
ACCTCCTACACTTGAGGGAGAAGCAACCCCCTGCTGTACGATTATCTACC
CTCACTTTTGCGGGCTTTCAGAACCGTTGGCTATCGCACTAGAAATCAGA
CACAGCGTTTCCGGAAAACCGGTTAACTGAACTGATTTTTGCACAGTATT
CGAGTTGCCGGAGTAGACTGGAAGTCGGGCAAATCAGCACTTTTTAGGGA
GAGATGCACCCCCTTCCTCCTCGCTAGATTTGGCCCCCTCGCCGTGTGGA
TGTTGAGACAAGCACGGAGAGAGCCTTGTCGTCTCGAACCATAACAGACA
CACGTTCCTGTTCATGGAGCTCTACTGGTGCGCATGCATGCTTGAATACG
TCCGGTCCCCGACAGGTAGCAGACAAGGCGAAGATAGCGGCGGATGTGGC
GAAGCAGGCCGCGGAGGGTGCCGGGAAGCTGGCGGAAGACGCCGGGAACG
AGGTGGGAGATGTGGCGGGTGACATCAAGGACGGAGTCCAGGATGCGGCC
GGCACCGTGAAGGACGGCATCGTTAACGCGGCCGACAAGGTGCCGAACGC
TGTGCTTTCTTATGCCTTCCTTTCTCTTGCCTCGGGTTGAGAGTGCCTAG
ACAAGGAGTGGATCATGAACCGCGTGAAAAACACATACGTTGAACAAACC
GTTGTCAAAGTAAGAATGCCGACAGTGTTCGATTGTCCTTCCTCACCGAA
AAACCCCACTCACAATCAAGGCAGGATCTGCGAGAGTTAATTAGTCGAAG
TTGGTCTGGCAAGCATTCATTTCCACGCAGGTTGCTTGATGGCTCGAACG
TTGGACGCCACGTGCGTGCAAACCAAGCTTCCTAACGCCACATTTACGCT
TTGAAAACGCTTTTTTCACTGCTGTCCTGTGGAAAAGGTCAAGGATGTTG
CCAAGGATACCGTCGAGGTCGTGGGTGATGTGACGATGAAGGTGGTCGAG
GTGGTGGAAGAGGTGGTCGTTGAGGTGAGACGCAGTCGAAGAGATACGGT
GCTTTACATGGTTTGGGTCCGGCGCAGCGCACCAGTCGCTGACGTTCGCG
CCGCAGCGCCATCGTCAGGACTACTGTGGATACTTGGCGGCAGTTCTCGC
TCCTGAATGCCTACAACACTTGTCTGTTCCATGAGGGTGTTGATCCTGTA
CTTTTGCCAACCATCTCTTACCCTTTCGTAGTCTAGATGCGTCGTCGAAT
CGTTCCGATCAACGTTGGGGGCTCCCCCGCCGACTAACCCTCCGTCGAAC
GTTCTATTCTTCTGGATACTCAGGTGTGGGAACACACTCCAGAGGGGCTG
AAGAAGGTGGCCAGGAAAGTGTCGGTGAGCTACATAGTCCCTCGTCGCGT
TGGAAGAGTATTCAATTTGGATAACGAAGCCCCTCTCCTGTTTTCAAGGC
GTTCCTTCTCTGAGCACCAAGTATACACGCCGTGTGCACGTGAGGTCCTG
TTCTTTCGATTGTCCGCTTCGAAACAACGATGCTCCCTCTTGCACTGATA
CCTAGTGTATTTTCTTTCTGGTACAGGTGGGCATCACGACTGAGTTGGTT
GATGAATACACCATCAACCCATCGAGCTAGAGTATGGTAAACGTTTGATC
GGTGTTTTATGTTTCGAAGGGTATTGGCTCTTACCCTGACTGAAATCAAA
TCCAGGGCAACAAGTTGAACTAGAGAGAAGCAAAGGCTCGCAATGAAAGG
ACAATCAACACGACCTGAACAGCACAGCCGTACACGGAACATGACTCCTC
CTTTTTTGGCCAATGGGAGACTTCGCACCGTCTACAGTAGATGCTCCAAT
TATTTATCGTTCACATCCCCCTATTTGACACTCCTCCTCCTTTGATCGAG
TCTTGGAGGAAGGCGCAGGTGTAAGGGAATTGAATTGTGCGTGCTCCAGA
ACAACCACGACAAGACATTGATCAGTAACATCCGTCAGCAGCATATTTGC
GATTGCTTCGAACCGTCCAAATACCCCGCCCCGACGTTTCTTGCCTTGAT
TCCATCCCTTCCAGAAAGTTGTCAAGAAGGGGGTGGATTTTGTGGTGAAG
ATCGGCAAGGTGGTGTATCACTTCGTGGAAACCAAGCTCGAGCAGCTCAT
TAAGGCACTCGACTGGCTGTGGGACAAAATCAAGGTTTGGACGTGCGGGT
TGCGGCAGAGACAACACCAAATCGAAAAACTGCACCGCATGTGGCTGTAG
GCAGAAGGACAAGATGCATTCACGGATTCACACCTGTTACTGGCTGTAGT
CCACGCCGAATCCCCTGCCACTCATGCAGAGACGTACATCGATCTGGACC
AAGGCATTCATTGCTGCATCACAATGAGGTCCAAGCTGGTGCTTGTGGTT
GCCGCGGATAGTGCGAGAAGAGTGAGGTTCGCAATAGCAGTAACGTGACC
ACCCCTGGGTTGAGTTACACGACGATGTGGGCCACAACTGATCTTCTTGC
GATTTTCATGACGCTGGAAAGCTCGAAAGCAGCCGCACTACATTTCTGCG
TTGAACGCATGTGCAATCCTGCGATTGTTGATGCTACCGTACCAAACGAA
CAGACGGGTATCATGAAGGCCATCGAATGGCTCGCCAATTTCTTCAAGTA
CAAGGAGATTTTGAAGACCGCCGAGATATTGGAAGCCCAGGTGTTGGCTG
GGATGGACGAGTTCATCAAATCAATTCCCACACAGGGAGACATCAAGGAA
TACTTCAACGAAATCCGCCAAATGCTGCAGAAGAAGACGTGAGCATGATC
CTCCCGCTTTGGTCTTCAATGAAACCGTTAGTTGATACCCCTCTTATGGA
ATAGAAGCACGCGGTCAGGGTTGCACCTTAGGCTTCTACAGTATCCAATT
TTGTTTTCTTCATGGCCTGTTGGATATGCCACAGAGTCTCGGGTTGGTTG
TCGAACGAAACTGAAAGAAACTGTGCAACAAGGCATCATGTCCTCGAACC
CATACCACCTGTGCTTCGTGTGGATCACCTATGCTCGGTCTTCGGAATGT
TGGTCCTGAGATCTAGTGTCAGCAGTGTAAAGTCCCCGTGCTTTGTTAAA
CTAGAAACCTGAACCCAGATAGACGTGCAACGAAGACCACACGAGTTTCG
GGACCGAATCAATTCTGTGAGTTGTTGTAGTAGCCAACGGCTCGCCACCT
GCCAGCGTGCCGACCGGTAAGCCGCCGATCCGGGTGATACGTTCTTGGCG
TGCTTCGTTCCTTACGTTCTCCGTCAACACTGGCGTTTCGTGGCTCCCCT
GCAGCGGCCTTGACCTCGATGCCCAAGACATGAGCAAGGAGGACACGGCG
CAGGACGACCGCGAGATCGATCCCAAGGAAAACTTCGTTCAACACCACGC
CGAGTCCGGCACCTTCCACGAGTCAGCGGGCCCCGCGGATGAAGAAGGTG
GGTCGATGGCATCTCTCTCGATCGCGTCCACCGACGTTGTGGGGTCCCAC
CCGAACCTTGCGTTACATGCCGGGCCGGCAGTGACCCTTGCTGCTGCATT
TTGTAGTTGCCTGAGTTGACACGGTCAGTCAGTCTGTGCCTGCATACGAT
TGGACACATCGGCCATCGTGGGCGTTGGCAGGGTCCAAGTTGGGTGCTGC
ACGGAGCCCCAGCTGACAGCATGCGACGAACCGCCCTTTGAGTTCTACGC
TCGAAAGGCCACTCAACCCTAGAATCGTCAACCATGACGCACTCCCCACC
CCCACCGTACACGTCTGTCTGTCTCGAGCAGAGGATTCTTCGGACGACAG
CGATGACGACGACTCCGGCAAGGACAGCATGGCGGACAAGCTCCAGTACC
TGTACGGAAAGTTCAAAGAGGGCCTGAACGCGTTTATGTCCGCGCTCGCC
GAAGGTTTCCTCGATGTTCTGGAGGTACGGTATGCCGGGGGTGAGGGGGC
GAGTGAGGACAACCTTTGGTGCCTCCGCTCCTCGCGCTAGACCTGCAGCC
AGTCGAGAGCACTCTTGGGTTTGTCTGTGTACGCGCACTTCCTTAAGAGA
TTGATTGCGAGGGGGCATGCCGAAGTTGCCCATATCGAACACCTCCCTTT
GTTCGGTAAACGTTGTACATGGCGCTCTTTTCTTCAGGAAAAAAAAATTG
TGTTGCGGCCACCACCTACAAAACAACAGCGAATCATTCCGCGTGCGTTC
CGATGTCGCACAGGCCAGCACCAAGGCAATGATGGACCCCCTGAAGAACG
CAGCGAACGCGGTCCGTGCCTGGCTCGCCGATGGAGGCACGCAATACATC
CCGGTCATCAGCGAGATCTACAAGCTCATCACGGGGCGCAAACTCAAGCT
TGCGAAAGCGTTGTTCTTCATGCTTGCCATCCCCGTAACATACGCCTCCA
AGGCACTTCTAGGGAAATGGCCATCGGAGCTGGGCTTGATAGACCCAGCG
ATGGACACCAACAGTAGCACTATGGCGATCGTTGAAGAGGACGTCCAATC
TTCTGGCACAGGTTAGTCTAGAGGGTAACCAACTGGCGTCGTTCCGCCAG
CTGCCGCCAAAAATATAATAGACTATGCTGTCCTCGTCGAGGAAGGGTTA
CAGTACAATTTCCCTACAAGCTCGAACACAATGCACAAAGATACTGTGGT
CAGTCACTGATTCGACCGTACTGAGAGTTTTTCTACCGCCCTGCTACCGT
CTGGCGTGCAAGATCTGTTGTCACTACTGTATTGTCACAGCACTTCCGGC
ACTAAACAGGCAACTCGCGCAACCTCAATCCTTCCTCTTACAGGTGCTCC
AGCGCATCTGACGAGGAGCCTTCCTGGCGATAACAGCAGCAGGTACGTAG
AAGTGCTCGCTTGGGAGCTCGGAGAGATATGTTTCGTTGCGGCCCTGTCC
GTGAAGACCTGGCGTCGCCAAAAATGATTTGATGAAAAATGTGACGCCGA
ATCGCGTGATGAATCTCACCGAATGTGAGGATGTATGGTATCACCCACCA
CCACCGTCTCCCGGCGAGGGAAGTGCGGCGATAAATAGTTCTCCACGCCT
TTGATGGCACAAGCAAACTACACGGGACTTGCACCCGAGAAGCAGTCTTT
CTTTCCCGAAACTATGAGTAAGTCTGACTCAACAATTTATTGGCTGCTGT
CTTGTCCGTCGCGTCGCGTGCAGCGAGTTCGTCTACACATCGAGGTCGGG
GGAAAAGGAATCAGACAAGGGCAGCGAGACGAAAAAGAAAGTATGGTGGG
CCCTGCTGAAGGTTGCCTCCATCGTCATGTCTGGCATCGTAATACCTTTC
CAAGGTGATGGGAAGTTCGCCCAACTCATTGGTTTCGATGCTGTCAAGCG
GCAACGTTGCTCATCGTCAAGCATCTTGCGGCCAATAGCAACGGCGTACA
AGACAACATGGCTAGAACGTACTTCATGCAGTTTCTCAAGAGTGCTCTAT
GGGCAACGCCCCGTTGTCCCGCGGAGATGCAAACATCGAAAATACAGCCC
GTTCTTCTTCTGGGTGAGAGTGGAAATGCCGCTGAGTAACAGGATGCATG
TTTGTGCTAATCATCTCACTGCGGTGTTGGGGTGCGTTCATTGTCTGCTG
TTTCGAATTGCAGCGGTGGTGGACGTCAGCAAGGTTCCAGGACAGAGACG
CTTCCCCAGGGGCCACAGGGTATTCAAGATAATTTCTTTGGCCAAAGTAA
TCCAGAAGCTCCTGGACCGCGGAGCGAGCATGGTCTACGTTGGCGATTAC
TTCGACAAGACAAAAAACCGGGAGAACAAGAAGAAAACTGTCCTGAAGAA
GTAAGAAAACGGAATGTTTTCCGTTTCCGGTTGTGTGTGCCTTCCCGTGC
CCTCCCCGGCTGGCTTGTAGCGGGGCCTAGACTTTCGTCCAAACGGGATT
GATCGATAGACCACGCTTGCTGATTTCCCTCCGTTGCTCAAATGGCTTCA
GATCGCTGTTGTAGTGGTTGCATGTTGCTGGTACGCCGAAGTCAGTCTGT
GTGTTATGCATAGACTATGCCGATACAAGGAGGTACTGTAGTATCGAGAA
ACCCTTCCTTGTTTTTATTGGCCCCTGCTTCTTTCAGGGGCGACAAGGGG
CTCTTCTGGTTTACCTTCGCACTCGAGGTGGGCGGCACCGTCGCCGACGC
CGCTTTGGGGTTCTCCGAACAAGGGCACCCTCACGCAGGCGGTCTGGAGC
ACAATACTCCGCAGGGAGGGCTCACGTAAGCAAGCGGACGTGATGAGTCT
CTTTTCTGTGGTCCCGGATCATTGTCGAACAACTGACTGAATCGTGCTTC
TAGACGGCATCGGGCAGAGTGACTCTCCCCTGTCGCAGGCTCGTGAAGAT
GTCAGCATAAAGTGCATGTACAGGTTTATCCACTGCCGATGGACGCGAAG
GAAATCAACCACCGTCTAACTTGATGGAGAGCACCCCATCGCAGAAACGA
CTACATGTTCCTCGTACTCGCTTGACCGCCGCACCCTGCCGTAATGGCTT
CATCACGTTAAGGATCGTCCAGCAGAACGATTATGCGAGCGTCACAGAAT
ACCTTCCTTCCCTGTCTCGCTTGTCCTCGGCCAACGGTGCCGTGTGCCTT
GGATTCCCTCCGCCTTTTCAACTTTCAGGCCGGTAATTGTTTACGATGCA
TGCGAAGGTATCGCTGAGATCGCGAAGGGGGCAAGGTTGATGTGGCTTGC
AATCGAGTTTGGCGAGGGCGGCTTCCAGCAAGGAACGATGGTGTTTCAAG
GTGATGTGCCTCCCTCTGTGATGCTGAGTTTGGCCGCGTTTGACGGAGGT
ACTGCCCTGATGAAGCCGGTTACTGGAGTCGACGGGGCTGGTGCATGCTT
GAAAAGCAAGCAATCCTTTCTTCAGATGAGGGGATCCAGGCCTTCTTGTT
GAATGATTCCACCAATCGTCATCTTGAGCTGCCTGCCATGGGTCTTGGTT
CTGAGCTACAACCTTCGCCCTGACAACAACAATGCCCTGCTCCACAGGTG
TTCACGGGGTTTTCAAGGGAGCCTCTCAACTGGCCAAGGCGTATTCAAAG
TTTCTGAAGGTCCCGCCTAACAAGCCCGAATACAAGATTATGGTCATACT
TTTTGCAGCCCATATGAAGTACAGGACGAACGTCTGGCCCCTCGGAATAG
CATCGGTGGCGGTGCAGCTAATAGGTGCTGACAAGGCTGACACGGAAGAC
CAAGAGCAGACAAACGACGCGTACTGGACTGCTTGCCATGCGTACCTGTG
AGGTGCCGCGTTCGAATCGGGCGGGGAAGTGCGCTAGGGTGCTGAGGGGG
GCAAGGAGCAAGACACGGAGCTGAAAAGGCGTACCTGACGAGTTGCTGTT
GTTGCTTGGTGTGGCTTTGCGTGTGGCCGTCGAATGGCATGTCGCCTTCA
GGACGGGCTGGTTGGAAAGGCGGGAACCTGTGTACCTCGAGGTAGTGGAG
GTAGAGAAGTGTTTTGTAGGCTTCGATGCCTCCTTGTTCTTGCTTTCACC
AAGGAGTTGTATTCCGTCTGCTTGTTTTCCAGGGAACTGTCTGGACAAGT
ATCTCGCCAGGCGTGTTGCTTGAAGCCCTGGTTTCCCGCGTCTGAGCGAT
TGGGTATGTCTTGTCTGCTTCCCATTCTGTACCATCAGATCGAGGATGGG
ACGGTGCTTTCATCGGAATCAGTCCCTATTGATTTGTTGCACTGTTTTTT
TTTCAGCAGTTACCC
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Coding sequence (CDS) from alignment at chr_28:3622342..3631206-

>Ec-28_003780.2 ID=Ec-28_003780.2|Name=Ec-28_003780.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=426bp|location=Sequence derived from alignment at chr_28:3622342..3631206- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGGGCCCTGCTGAAGGTTGCCTCCATCGTCATGTCTGGCATCGTAA
TACCTTTCCAAGCGGTGGTGGACGTCAGCAAGGTTCCAGGACAGAGACGC
TTCCCCAGGGGCCACAGGGTATTCAAGATAATTTCTTTGGCCAAAGTAAT
CCAGAAGCTCCTGGACCGCGGAGCGAGCATGGTCTACGTTGGCGATTACT
TCGACAAGACAAAAAACCGGGAGAACAAGAAGAAAACTGTCCTGAAGAAG
GGCGACAAGGGGCTCTTCTGGTTTACCTTCGCACTCGAGGTGGGCGGCAC
CGTCGCCGACGCCGCTTTGGGGTTCTCCGAACAAGGGCACCCTCACGCAG
GCGGTCTGGAGCACAATACTCCGCAGGGAGGGCTCACGCCGGTAATTGTT
TACGATGCATGCGAAGGTATCGCTGA
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Synonyms
The feature 'Ec-28_003780.2' has the following synonyms
Synonym
Esi0009_0001
Esi_0009_0001