Ec-28_003640.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003640.1
Unique NameEc-28_003640.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length109
Homology
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BLAST of Ec-28_003640.1 vs. uniprot
Match: D8LTL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL6_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 9.590e-69
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MSAEAGVKQAEEDEKNTADKARDGETLPHVAVDNVLLSMKLQVTDVASREQGHAKIRLLVSNVSDGGYSDDNFERDMFLLGGVLVVFGGRALVLITKYCLQEITPSAR 324
            MSAEAGVKQAEEDEKNTADKARDGETLPHVAVDNVLLSMKLQVTDVASREQGHAKIRLLVSNVSDGGYSDDNFERDMFLLGGVLVVFGGRALVLITKYCLQEITPSAR
Sbjct:    1 MSAEAGVKQAEEDEKNTADKARDGETLPHVAVDNVLLSMKLQVTDVASREQGHAKIRLLVSNVSDGGYSDDNFERDMFLLGGVLVVFGGRALVLITKYCLQEITPSAR 108
The following BLAST results are available for this feature:
BLAST of Ec-28_003640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL6_ECTSI9.590e-69100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3467121..3468180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length327
Hectar predicted targeting categoryother localisation
Gene idEc-28_003640.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003640Ec-28_003640Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3467121..3468180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003640.1.3Ec-28_003640.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3467121..3467254 -
Ec-28_003640.1.2Ec-28_003640.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3467782..3467878 -
Ec-28_003640.1.1Ec-28_003640.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3468085..3468180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003640.1CDS:Ec-28_003640.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3467121..3467254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003640.1Ec-28_003640.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3467121..3468180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003640.1 ID=Ec-28_003640.1|Name=Ec-28_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=109bp
MSAEAGVKQAEEDEKNTADKARDGETLPHVAVDNVLLSMKLQVTDVASRE
QGHAKIRLLVSNVSDGGYSDDNFERDMFLLGGVLVVFGGRALVLITKYCL
QEITPSAR*
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spliced messenger RNA

>Ec-28_003640.1 ID=Ec-28_003640.1|Name=Ec-28_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=327bp|location=Sequence derived from alignment at chr_28:3467121..3468180- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGGAAGCAGGTGTGAAACAAGCAGAAGAAGATGAAAAGAATAC
AGCGGACAAGGCCAGGGATGGCGAGACTCTCCCACACGTTGCTGTGGACA
ACGTTTTGTTGTCGATGAAGCTGCAGGTAACAGACGTGGCTTCGCGAGAA
CAGGGACATGCCAAAATCAGACTGCTGGTCTCTAACGTTTCTGATGGTGG
TTATTCGGATGATAACTTCGAGAGGGACATGTTCCTCCTCGGCGGGGTGC
TAGTCGTCTTTGGCGGGCGGGCCTTGGTGTTGATCACCAAGTATTGTCTG
CAAGAAATTACGCCATCGGCGAGATGA
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protein sequence of Ec-28_003640.1

>Ec-28_003640.1 ID=Ec-28_003640.1|Name=Ec-28_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=109bp
MSAEAGVKQAEEDEKNTADKARDGETLPHVAVDNVLLSMKLQVTDVASRE
QGHAKIRLLVSNVSDGGYSDDNFERDMFLLGGVLVVFGGRALVLITKYCL
QEITPSAR*
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mRNA from alignment at chr_28:3467121..3468180-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003640.1 ID=Ec-28_003640.1|Name=Ec-28_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1060bp|location=Sequence derived from alignment at chr_28:3467121..3468180- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAGCGGAAGCAGGTGTGAAACAAGCAGAAGAAGATGAAAAGAATAC
AGCGGACAAGGCCAGGGATGGCGAGACTCTCCCACACGTTGCTGTGGTAA
GTTTGAGTACGCGGATTTGCCGTAGGCGTTTCGACCACATAGTGAAGCCG
TAGACAGAGATGGTGTTTGGGAGGAAGAAATCTGGAATGGGGACCTCGAA
GACTAGAACCACCCGCTACGCTCGCCGATCGCCAGAGGCACTCCCGATTC
CCCTCTCTTCCTTCCTATCCGACTTTCCTACTTCATTTATTGATGTTTTC
AGGACAACGTTTTGTTGTCGATGAAGCTGCAGGTAACAGACGTGGCTTCG
CGAGAACAGGGACATGCCAAAATCAGACTGCTGGTCTCTAACGTTTCTGG
TGAGATGGGTGTGTCTCGTTCATTGTTGGGGCAGTGATATCTGCAGCAAA
CCTGAAGAGCTTCCACATCACACGATATAGTAATCAGTAGAAATCGGTTA
CTCGGGATGAACCAAGGATGATCAGCGTTCCCTGATGCTTCACAAACACA
CACCCCTCGTGAATCTTTGCCACGCACCCTCTCTCGCCGTCATCACTTTT
TGAAGCGCACACAGAGTCACCCCAATCTCAAGCACCCACGCCATCTCCCG
TTGATATTATACCGTCGGTGACGTCCGAACGTATGCTTGAGTTCGCGCGT
ATGTATGGCAGCATCGATTTTCCGCGTTGAATGAAGCACTCTGGCGAGTT
TTGTGAAGGTCTTGATTGAGTGAAAATGTCAGTCATATTGATGGGTGGCA
TTCTGAGGAGGAGTCAAAGCCATCTGTTTCCACCTCTTGTGCTCTCGAAA
GCCACAATCTATCAGTTTCCTCTTGTGTCCCCTCTTTGACCAACGCCCTA
TCATTTTCCCCAACTGCCTTGGACAGATGGTGGTTATTCGGATGATAACT
TCGAGAGGGACATGTTCCTCCTCGGCGGGGTGCTAGTCGTCTTTGGCGGG
CGGGCCTTGGTGTTGATCACCAAGTATTGTCTGCAAGAAATTACGCCATC
GGCGAGATGA
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Coding sequence (CDS) from alignment at chr_28:3467121..3468180-

>Ec-28_003640.1 ID=Ec-28_003640.1|Name=Ec-28_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=327bp|location=Sequence derived from alignment at chr_28:3467121..3468180- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAGCGGAAGCAGGTGTGAAACAAGCAGAAGAAGATGAAAAGAATAC
AGCGGACAAGGCCAGGGATGGCGAGACTCTCCCACACGTTGCTGTGGACA
ACGTTTTGTTGTCGATGAAGCTGCAGGTAACAGACGTGGCTTCGCGAGAA
CAGGGACATGCCAAAATCAGACTGCTGGTCTCTAACGTTTCTGATGGTGG
TTATTCGGATGATAACTTCGAGAGGGACATGTTCCTCCTCGGCGGGGTGC
TAGTCGTCTTTGGCGGGCGGGCCTTGGTGTTGATCACCAAGTATTGTCTG
CAAGAAATTACGCCATCGGCGAGATGA
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Synonyms
The feature 'Ec-28_003640.1' has the following synonyms
Synonym
Esi0009_0036
Esi_0009_0036