Ec-28_003540.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-28_003540.1
Unique Name	Ec-28_003540.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	518

Homology

[Close]

BLAST of Ec-28_003540.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE)

HSP 1 Score: 770 bits (1988), Expect = 2.690e-277
Identity = 424/490 (86.53%), Postives = 432/490 (88.16%), Query Frame = 1

Query:  109 MGQPAPGWEDVEPSAEGHDGGSG-RTAVGKLWRQPLRALNHCSSDANMTPAVPTTVVDARDSDLGHVACAPTSN-ASLGGRPQDTEIREAHGGGLQGLEGEKVGEGTSKGLSVWRGQQQXXXXXXXXXXXXXLQ--REGVVVVGEIEQRK--QEDKAGATEFDVGPFEGEHNYNIRHHNXXXXXXXXXXXXXXXXXXXDSSRVRGFHDMICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRR-FCCRWNPAGVLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTAEGVVEGGVG--RERSFDPV 1551
            M QPAPGWEDVEPSAEGHDGGS  RTAVG LWR PL ALNHCSSDA MTPAVPTTVVDARDSDLGHV CAPTS+ ASLGGRPQDTE RE HG GL  LE EKVGEGTSKGLSVWRGQQQ   XXXXXXXXXXLQ  REGVVVVGEIEQR+  QEDKAGATEFDVGPFEG HN++IRHH                    DSSRVRGFHDMICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANS+EAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWL+G T+IGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSV       MATLTVLCQFFIGIVALPKPSRSSPQNRRRR FCCRWNPAGVLLA LGLG SS AFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRL AEG+VEGGVG  RERSFDPV
Sbjct:    1 MVQPAPGWEDVEPSAEGHDGGSSNRTAVGNLWRHPLGALNHCSSDAKMTPAVPTTVVDARDSDLGHVECAPTSSSASLGGRPQDTETREPHGEGLH-LEAEKVGEGTSKGLSVWRGQQQQRQXXXXXXXXXXLQDEREGVVVVGEIEQRQRQQEDKAGATEFDVGPFEGRHNFSIRHH----IDNGSSTSGGERRGGGDSSRVRGFHDMICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVXXXXXXXMATLTVLCQFFIGIVALPKPSRSSPQNRRRRRFCCRWNPAGVLLAHLGLGGSSAAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLMAEGIVEGGVGVGRERSFDPV 485

[Close]

BLAST of Ec-28_003540.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 5.600e-181
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1

Query:  715 MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRWNPAGVLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTAE 1503
            MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRWNPAGVLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTAE
Sbjct:    1 MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRWNPAGVLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTAE 263

The following BLAST results are available for this feature:

BLAST of Ec-28_003540.1 vs. uniprot

BLAST of Ec-28_003540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JU38_9PHAE	2.690e-277	86.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LTM4_ECTSI	5.600e-181	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:3350728..3357928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1554
Hectar predicted targeting category	other localisation
Gene id	Ec-28_003540.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_003540	Ec-28_003540	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_28 3350728..3357928 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_003540.1	Ec-28_003540.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_28 3350728..3357928 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_003540.1.1	Ec-28_003540.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3350728..3351078 +
Ec-28_003540.1.2	Ec-28_003540.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3353844..3354044 +
Ec-28_003540.1.3	Ec-28_003540.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3354431..3354715 +
Ec-28_003540.1.4	Ec-28_003540.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3355179..3355253 +
Ec-28_003540.1.5	Ec-28_003540.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3355775..3355885 +
Ec-28_003540.1.6	Ec-28_003540.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3356340..3356516 +
Ec-28_003540.1.7	Ec-28_003540.1.7	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 3357575..3357928 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_003540.1	CDS:Ec-28_003540.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_28 3350728..3351078 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_28:3350728..3357928+
coding sequence from alignment at chr_28:3350728..3357928+

mRNA sequence

>Ec-28_003540.1 ID=Ec-28_003540.1|Name=Ec-28_003540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=518bp
MEAGRNQACPKTTGCDLQRQGEYPQEEKADDSLAHAMGQPAPGWEDVEPS
AEGHDGGSGRTAVGKLWRQPLRALNHCSSDANMTPAVPTTVVDARDSDLG
HVACAPTSNASLGGRPQDTEIREAHGGGLQGLEGEKVGEGTSKGLSVWRG
QQQQQQQDEREDVRQDLQREGVVVVGEIEQRKQEDKAGATEFDVGPFEGE
HNYNIRHHNDNGNSTSGGERRGGGGGGGDSSRVRGFHDMICIGFAVSLIL
NLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVT
FNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRM
VKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNS
VSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRWNPAG
VLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTA
EGVVEGGVGRERSFDPV*

spliced messenger RNA

>Ec-28_003540.1 ID=Ec-28_003540.1|Name=Ec-28_003540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1554bp|location=Sequence derived from alignment at chr_28:3350728..3357928+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCAGGGAGGAACCAGGCTTGCCCGAAGACGACGGGTTGTGACCT
CCAGCGACAAGGCGAATACCCTCAGGAAGAAAAGGCAGATGACTCGCTAG
CGCACGCTATGGGTCAGCCTGCGCCAGGATGGGAGGACGTAGAACCTTCC
GCGGAGGGTCATGATGGCGGGAGTGGTAGAACAGCAGTGGGCAAGCTGTG
GAGACAGCCTCTCCGTGCTCTCAACCACTGCAGCAGCGACGCTAACATGA
CGCCTGCTGTACCCACTACTGTAGTCGATGCTCGGGACAGTGACCTTGGC
CACGTGGCGTGCGCGCCCACTAGCAACGCTTCGCTGGGAGGGCGTCCTCA
GGACACGGAAATACGAGAAGCACACGGTGGAGGATTACAGGGTTTGGAGG
GGGAGAAAGTGGGGGAAGGCACCTCCAAAGGCTTGTCCGTGTGGCGGGGG
CAACAGCAGCAGCAGCAGCAAGACGAGAGGGAGGACGTGAGACAAGACCT
GCAACGGGAAGGCGTTGTCGTTGTTGGCGAAATCGAACAACGGAAACAAG
AGGACAAGGCCGGGGCCACGGAGTTCGATGTCGGGCCATTCGAAGGAGAA
CACAACTACAACATCCGCCACCACAACGACAACGGCAACAGCACTAGTGG
AGGGGAAAGACGGGGGGGGGGCGGGGGCGGGGGCGACAGCAGCAGGGTCA
GGGGTTTTCATGACATGATTTGCATCGGGTTCGCTGTGTCCTTGATCCTT
AACCTTGGCAGTTTCACGGCGCGAAAGGAAGGCTATTTCGCCGCAGAGGT
CAAGTGTTTGCCCCAGGGAGCATCGCAGACCGTTCTGCCAGACCTCGGGG
TATGGGTCGGGTGGAGACAGGCCGTAGCCAACTCAGATGAGGCTGTCACG
TTCAACCTAGAGGAAATGAGCATGGTGGGGGCCGTGATGGGAATTTTGAC
GGTGGTGGGGAACGCGACGGACGGCCTGCTCAACGCCGTCGGTCTTGCGG
TGCTCCTCTACGGCCGGCGAAAGCCCCTGCAGGAAGCCCAGTGTCGCATG
GTGAAGCGGTTGTGCCTAGCCTCGCTGGCCATGGCAGGGTGGCTGTTGGG
CACGACGATCATCGGCTTCTTGATAGCGGTAAAGGGGCCCATCGGAGCTG
CGGCCGTAGCCTTCTATTCGGAGGAGTTCGACCTGGACTGCGGGAACTCG
GTGTCGGTGAGCGTCGACTACGCGTATGCGATGGCGACCCTGACGGTCCT
CTGCCAGTTTTTTATCGGGATCGTGGCGCTACCGAAACCGTCTCGCAGCT
CCCCCCAAAACCGCCGCCGCCGCTTCTGCTGTCGGTGGAACCCGGCGGGG
GTTCTGCTAGCGCGTCTAGGGCTCGGGGACTCTTCGCCGGCCTTCGACGA
AAACGAACTGCCTTCTTTCGCTGGCGAAGCGGGGCAACCGGCGGCAGCGG
AAGGGCCAGTCAAGGCGAAGGGGTCTCGACGAGGGTCTCGGCTGACGGCC
GAAGGTGTAGTAGAGGGAGGGGTCGGGAGAGAACGGAGTTTCGACCCTGT
GTGA

protein sequence of Ec-28_003540.1

>Ec-28_003540.1 ID=Ec-28_003540.1|Name=Ec-28_003540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=518bp
MEAGRNQACPKTTGCDLQRQGEYPQEEKADDSLAHAMGQPAPGWEDVEPS
AEGHDGGSGRTAVGKLWRQPLRALNHCSSDANMTPAVPTTVVDARDSDLG
HVACAPTSNASLGGRPQDTEIREAHGGGLQGLEGEKVGEGTSKGLSVWRG
QQQQQQQDEREDVRQDLQREGVVVVGEIEQRKQEDKAGATEFDVGPFEGE
HNYNIRHHNDNGNSTSGGERRGGGGGGGDSSRVRGFHDMICIGFAVSLIL
NLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVT
FNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRM
VKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNS
VSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRWNPAG
VLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTA
EGVVEGGVGRERSFDPV*

mRNA from alignment at chr_28:3350728..3357928+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-28_003540.1 ID=Ec-28_003540.1|Name=Ec-28_003540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7201bp|location=Sequence derived from alignment at chr_28:3350728..3357928+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGCAGGGAGGAACCAGGCTTGCCCGAAGACGACGGGTTGTGACCT
CCAGCGACAAGGCGAATACCCTCAGGAAGAAAAGGCAGATGACTCGCTAG
CGCACGCTATGGGTCAGCCTGCGCCAGGATGGGAGGACGTAGAACCTTCC
GCGGAGGGTCATGATGGCGGGAGTGGTAGAACAGCAGTGGGCAAGCTGTG
GAGACAGCCTCTCCGTGCTCTCAACCACTGCAGCAGCGACGCTAACATGA
CGCCTGCTGTACCCACTACTGTAGTCGATGCTCGGGACAGTGACCTTGGC
CACGTGGCGTGCGCGCCCACTAGCAACGCTTCGCTGGGAGGGCGTCCTCA
GGTGGGCAACGACCCTTACCGTGGGTGTGTCTCACGCAGCGTTTTCTTGG
CGGTTTGCGGAGGAATGTAGCCAACGATCTACGTAATGTTCGTATGCACA
CCAGAGAGGCTGGAAGCGGCAGTAGCATAGCATTCCCGCAGCGAGCACTG
AACTACAACCCGGCGCCAGAGAAACACACACACGCCGTCTTCCACTCGCT
GCCGGTCGCCCACGTGCGCCCGTCTTGCGAAGTCAACGTTTGTGTGAGTC
TGGTGTAGTCTACAATCTAAAGTTCCTTGGAAAGAGCCGCTGGATGCCCC
CGTATGTCTACTGGTTCTTTTTCCGTGTGCAAAGAAGTAGACCCCTCGCC
CTATGTTACATGATTGTTGTATGCTCGACCCCAGGGTCTTCTTGTGGCTC
GGGGACATACTATGCTCCGTGTGCAGCAAAAAGAGTGGTGGGGTAACATT
GCTCCTTGTACCGAAAGAACAGAGCACATATAGTACGCATACATATAATG
GCTGTTGCCACATGGTACCGTACCTCCTGGATCGATTTTCAAAACTCGAT
TGCTCTGCAGCGAAAACAGCAGTGACATGCTGTGTCGAAAATGGCGAGGC
GTTGGAACCGTCTAGTGGAGAGCATTTCGGCAGGGTATCCTTTGATTTTG
GCGTCCTCCTCGTCGTGCAGTAGCCGAGCTATTAAAATCGGCCCAAGGGG
GGGTGTTATCTAACATCATGCAACCTACGGTATGTAGGATACTCCGTGTG
GCAATTTTGTTGTTGTGGGAGACGGAAAGAGTCAACAGCCACGTGAAAGC
AGCCTGCTGGCTAGGGCTACTGCAGGGTATACCGTAAGTGTGGGTGACTA
CAGTAGACACAGCACCGCTACTGCTGTTGTAGGCGGGTATCGCATGGACT
GTACCTGCAAACAACAACTTCCGAGACAGAGCGGAGTCGTGACCGATGCA
ACTGGGGTTCTGTGCGCATTCCGCCCGTGGTCTCTTTTGTTTAGTCTAAG
TTAATCAAGCAACACACAGCGAATGTATCGAGAGGGATTTTGACGGCCTA
GGAAGTGTTCACTCCAGTTGTTGTTGTTGTTGTTGCTGTCTTCACATTAA
AAACCGTTCCGATCTCTCTCTACCCAGTACCATATTATGTCCTTACTGAT
CCAACACTTGACGCGGTCGATTCCCGTGGTCACAGGCTAACTTACCCTAA
AAAGGTACACTCAAATAAACTGGCCCCGGGGTCCGCAAGTCAATAGAAAT
CAACGACAGATATTCCTCCGCTCCCTCTGCGCGCTATGCGAGGTAACAAC
TGAGACTAGGAGTCAGCATCACGGGCCAGGGAGAAAGAGGTACACCCCCT
TGGACAGCTACGCAAAACAAACACTTGCATGTCTAATAGCATGTCTAATA
GTTGGGTTAGAGTAGTAACCAACTCTTTCTGGTGAGTCTGAGCTAGTATT
ATTGTTGATTGGAACAAAAAAGTCGCCCGACATTCTGGGGCAGTACAGCA
GTTGTTGGTTGTAGACAACGAAACAAAAGCCAGTCATCCACCAATTTTCT
GACCCAGTAATTGACTGGCGAACAAAAAACGACTGAAAAAATGGTTGCAC
GGGGTGTGAAAGTCTTCTTTCTCTTATAGGTACAGATATGTAAACTGTAG
CATCCCACACCTGGGCCTAATCGAATAGCTTACAATGTACAGTCAGATCT
CGCGCGTCACGGAGGCCTACCGAGCTCCGGGCACGAGCGTTAGTCGAATG
TACCGACGAGCCTCCTGCGTGCCCCTGAGAAGGAATCGCGAGAAAAAACT
CTCTGCCGCGCGAGAAAAATGAAAAGTCACCATATCTTGGTGTACATGTG
TTCCAAATTGGTCGCCCCGATGGCCTAGTGGTCACCTTCCTCGTAAACCT
ATCAACCAGTATTAGGTTGGAAGTTGATTATGGAGTGCTATGTATGAAAC
CTCTGCATTTTTCGTTCGAAAACCCGTACTTGTAAATTCCTTAGTAGGGC
TTGATGGTCAACAAGGGGAAGGGACGGCTGGGCCCTTCTCGCGATAGAAG
CTAAGCCAAGCACCGCAAGAGGAAACGGTGGGGTGTTTAAAACAAGAAAA
CGGCTTCAACAAACGCCTTGTCTGTGTGACCCTCCTCCTATATGACCCTG
GTCGATACGTCAAACATATAGGTACCACCACCGAGCGAAAGGTGTACAAT
ACACTGCGCCAGAATAAATGGAACGAACGCCAACACCCGCATTTTACAAG
CCCTGCTCGGCCCCGGCTTTGTAGGGATGCGAGGTCAATGGCCTACCGAC
TACGGCATGCACAGCGATGAGTACACCCTCCCCCTCCCCACCCTGCGATT
GTTGGACCCGGGGTATGCGTTATGATCGCGTTCGGCGACCCCCCCCCTCG
GTGACAACCACACGTTAGTGTACAATACATAGTCGGTTCGTAAAACCGAG
AGCGACAGCTGAAACATCATAATAACTGGACGAATAATTGCGTCTGTATC
ACGTGTTTCGTGGACGCACACTGATGATACTTGTGGCATACGGACGAAGA
GCTGATATTCACACAGGGCATTTTCCCAGGAATCTTCGCAGACACAATGG
CTCCAGGGTACCGCGTATGAATATCGTCATTCAGCCAAGCCGGTTGCCTA
TCCATCAGGGAAACAGATTCCGTTCAGGGGTCACGGAGCTGGGCGGTCAT
GTGTGCATGTACGATCACCAACACCGCCTTCTCTATCTCTCTCTATCTCT
CTCTCCACTTCTGAAGGACACGGAAATACGAGAAGCACACGGTGGAGGAT
TACAGGGTTTGGAGGGGGAGAAAGTGGGGGAAGGCACCTCCAAAGGCTTG
TCCGTGTGGCGGGGGCAACAGCAGCAGCAGCAGCAAGACGAGAGGGAGGA
CGTGAGACAAGACCTGCAACGGGAAGGCGTTGTCGTTGTTGGCGAAATCG
AACAACGGAAACAAGAGGTGAATACCGACACCCGGTCTGCGATGTTGGGG
ATGTGTACGCGGCAGTGATGGCCTTGGTCAAGGCGACGAGTTGCGGCAGG
TTTTAGTAGTGCGCTTGTGCCGATTTCAACGTGATGTCGGACCGTTGATT
TGAAGCTGTACAGAGAGTTTTTTTTTTTCTCCATGGCCATTCCCAACATC
ACCACATATTCATCACAAGGGTGGCAACTGGTCTTGTGACCAGATTCTTT
CACGTGTTATCTCGAGGAATCAAGGTGGTGTTGCGCTTTCTTGGTGCCTT
GGGCGAAGGCAGACAACACAGCAGCGGCAGCAGCAGCATACAGTAGGCCT
CCAGCCTGCGCAATCTCCATCCAAATTTGAGTCTTTTTTCCACGTTCCCG
CAGGACAAGGCCGGGGCCACGGAGTTCGATGTCGGGCCATTCGAAGGAGA
ACACAACTACAACATCCGCCACCACAACGACAACGGCAACAGCACTAGTG
GAGGGGAAAGACGGGGGGGGGGCGGGGGCGGGGGCGACAGCAGCAGGGTC
AGGGGTTTTCATGACATGATTTGCATCGGGTTCGCTGTGTCCTTGATCCT
TAACCTTGGCAGTTTCACGGCGCGAAAGGAAGGCTATTTCGCCGCAGAGG
TCAAGTGTTTGCCCCAGGGAGCATCGCAGACCGTTCTGGTGAGCACCCCC
GTTGGTCGTTCTTGTTTTAGAGAGGCTTCCTGAAATTTCAATCGTACCTT
TGCCGCTTTTGCGTCTAGGGTGCATGCTGTTAGAGGTAGTCCGTTTTGGG
TAGCACACCTGACTATTATAGGCCGTTCCGCGATATGCCGACTGCGGTGG
GACGGTTTTCAATGAGGCGTTTGTATCTTACTTGATGTCCTTCACCGCAC
CGCAACGGCTCATGCCGACCTCCGTTTTTTTCGCAGTACAACGACCCCTG
TACCCCCCACACCGTCGTGAATTTCTCGTTTTCATTGCCTCGCAGTCAAC
TACTAGAAGCATACTATTAGCCATCAAAGCGTCAGGGCCTCGGTGATGGG
TTTCGTTCGCCAAACATTTTTTTTGTGCTAACGAACCGATGGTAACAAAT
ACTTCCGGCGTGAATCCGCCACCCCTTGCCTTCCTCTTCTTCCTCTTGCA
GCCAGACCTCGGGGTATGGGTCGGGTGGAGACAGGCCGTAGCCAACTCAG
ATGAGGCTGTCACGTTCAACCTAGAGGTGAGCCACGAGTTTGGAACGCCG
GCGCTGCTGGTATGCTACCTGCAGGGCTTTCTTTGGGCGTGCAGCTCGGT
GTTGTATCGCCCGCTCCTTACTCCGTACAGCTAGCGTCTGCCAGTCGGTT
CTGTCCTGATGTTGGGGGAAGCCTGTGCTCGTGCTTGCCGGCAAGTTGCT
TGAGAATACGCGATTGGCTTAATCGGGAGTTTGCCTGCCGAGGGAGTCTG
CATCCTGTCTTTGACCCTCCTCACCCACCACGGTACTTTTAGAGGTGGAT
TGTTGGTTTTCTGAGGGCATTGTTTTACGGGATTTCGAGAGTGATGAGAA
CGTTCCATGCATGGCGAAGGAGTTCTGCCAAGTGGGGGATTTTCGGTCGA
GAAACTCAAGTAGCCGCACGGTGTGTTTGGAGGTGCTACCGACTGCAAAC
ACATGGGATGACTAATAACACATGATGGGACACGGTGCTCGCTCTTTGCC
TTGACGTGTGGTTTTTCGGCATGTGTACCCGTTTGCGGTCTACCCAGGAA
ATGAGCATGGTGGGGGCCGTGATGGGAATTTTGACGGTGGTGGGGAACGC
GACGGACGGCCTGCTCAACGCCGTCGGTCTTGCGGTGCTCCTCTACGGCC
GGCGAAAGGTGACTTTGAACGTCTATTGAATGGTGTTTAATGTTTACTTT
AGCGTTAAGGCACACCGCTTTCCTGAGTCGATGTCGGTGTTGCTCTGCTG
TTGGTGTTGATGCTTTCTGGTCCTAGGCCCGTGGGACAAAAGAGGGGTTG
TTGTAGGATTGCTATCGCTGTTGCTGTTGTTGCTGCTGCTGCTAATGCTG
CTGGTAGGCCTAGGTCGAAAACCGTCCGGTTCCATCCCACGTCCACGTAG
CACACTCAGCTTCTCGGTCTTGCAACTGTATCCTGTTTCTTTGCTACTAA
CCGGTGTTGCAGGTTGTCTGAACAAACCGTGCTGAGTCGCAAGCTATAGA
CAGCACACACCCGCGCACGTGTCTTGATGTCTGTGTCCATGTCTGCCTTT
GTGTCATTCCGTGTGGTTTGTCTCTCTTCGTCTACTACGTGCCTCGCTTG
GTGCGCGAGCAGCCCCTGCAGGAAGCCCAGTGTCGCATGGTGAAGCGGTT
GTGCCTAGCCTCGCTGGCCATGGCAGGGTGGCTGTTGGGCACGACGATCA
TCGGCTTCTTGATAGCGGTAAAGGGGCCCATCGGAGCTGCGGCCGTAGCC
TTCTATTCGGAGGAGTTCGACCTGGACTGCGGGAACTCGGTAAATACGCA
ATCAAGATTTAAAAACATTATTTCGAAGTAGATGGACACACCCCCAAGCT
CTTGCCGAGACGTCCTGCTTGGAAACTTAAGGAATCAACAGCAGTAACAA
AGATATTTTCGCAACGCAACAGATGGACGCACACCAAGCTTTTTACAGAG
AGAGCCTGAAACTCGGCAAGTACGCAATCAAGATTAAACAATAATATTTC
GCAACAGATGGCCACAAACCAAGTGCCCATGTTTTGAAAGTGTTCAGTAC
ATGCAATCACAGAAAAAAATCCGTCTCGATGTAGCATCACAGCAATCGTC
GAAGGGCATGTGTTGAAGTCTTTGCAGCAGGGAGGGGGGCGAAAAACCGG
CTTCTTTTGTCGAGAGAGCCTGATGCTATCGCTCATTTGAGAGATTGGCT
TCGAAATCAGGAGTTTCACCAGGCCGAAGTGAAGCAAGCCATGCTCGCGA
CCCTTCAAAGTGGGGGTGCTATGTATGTTGATGGGGTTTCTTGCAGGCTT
GGCCTGTCTTGCGTGCGTCCAGAGTGCATGAAGGCAAACGTCTCATCATC
TATATGTAGCGCACTCCATCTCACAAAGAAATGCGGTATTCCTCGCAGTC
CCGCTTCTGTGTGCCAGGATGACCCGCCTATTCCGGATCTGTCTCGTGGC
GAACCCCCGGTGTTGTCGTTTCAAGTAGTAGAAAAGCGCTGGATGTTTTG
CTTGCTTCATCCCTTTCCCGTGTCGTTCTTTTGGCTGTTTTGCAACACAG
CAGTAGCAGTAGGGGCCGGGAGACAAGAAACGTCCTTTTCGAGTCGAGGC
CCCAATTCTTACATATCTCGTCATTACCGTCGAGCACCCACAGGGTATCA
TATCATATGATCTGCATAGAGTGTAGTACCCACGTCTGAGCTGTGTTTCT
ATTACCCACATTTTTTTTTTTTGTTCGTGAGCGTTTGAACCTTTTTTCTC
AACGGCGTTGTTCTTAACTGCCGGGGACCCGGGGACCGCGCTGACTGTAA
CAGGAACGCGTCACCCTGGTGTGTGTGTGCCACGTGTGTTTGCACAGGTG
TCGGTGAGCGTCGACTACGCGTATGCGATGGCGACCCTGACGGTCCTCTG
CCAGTTTTTTATCGGGATCGTGGCGCTACCGAAACCGTCTCGCAGCTCCC
CCCAAAACCGCCGCCGCCGCTTCTGCTGTCGGTGGAACCCGGCGGGGGTT
CTGCTAGCGCGTCTAGGGCTCGGGGACTCTTCGCCGGCCTTCGACGAAAA
CGAACTGCCTTCTTTCGCTGGCGAAGCGGGGCAACCGGCGGCAGCGGAAG
GGCCAGTCAAGGCGAAGGGGTCTCGACGAGGGTCTCGGCTGACGGCCGAA
GGTGTAGTAGAGGGAGGGGTCGGGAGAGAACGGAGTTTCGACCCTGTGTG
A

Coding sequence (CDS) from alignment at chr_28:3350728..3357928+

>Ec-28_003540.1 ID=Ec-28_003540.1|Name=Ec-28_003540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1554bp|location=Sequence derived from alignment at chr_28:3350728..3357928+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGCAGGGAGGAACCAGGCTTGCCCGAAGACGACGGGTTGTGACCT
CCAGCGACAAGGCGAATACCCTCAGGAAGAAAAGGCAGATGACTCGCTAG
CGCACGCTATGGGTCAGCCTGCGCCAGGATGGGAGGACGTAGAACCTTCC
GCGGAGGGTCATGATGGCGGGAGTGGTAGAACAGCAGTGGGCAAGCTGTG
GAGACAGCCTCTCCGTGCTCTCAACCACTGCAGCAGCGACGCTAACATGA
CGCCTGCTGTACCCACTACTGTAGTCGATGCTCGGGACAGTGACCTTGGC
CACGTGGCGTGCGCGCCCACTAGCAACGCTTCGCTGGGAGGGCGTCCTCA
GGACACGGAAATACGAGAAGCACACGGTGGAGGATTACAGGGTTTGGAGG
GGGAGAAAGTGGGGGAAGGCACCTCCAAAGGCTTGTCCGTGTGGCGGGGG
CAACAGCAGCAGCAGCAGCAAGACGAGAGGGAGGACGTGAGACAAGACCT
GCAACGGGAAGGCGTTGTCGTTGTTGGCGAAATCGAACAACGGAAACAAG
AGGACAAGGCCGGGGCCACGGAGTTCGATGTCGGGCCATTCGAAGGAGAA
CACAACTACAACATCCGCCACCACAACGACAACGGCAACAGCACTAGTGG
AGGGGAAAGACGGGGGGGGGGCGGGGGCGGGGGCGACAGCAGCAGGGTCA
GGGGTTTTCATGACATGATTTGCATCGGGTTCGCTGTGTCCTTGATCCTT
AACCTTGGCAGTTTCACGGCGCGAAAGGAAGGCTATTTCGCCGCAGAGGT
CAAGTGTTTGCCCCAGGGAGCATCGCAGACCGTTCTGCCAGACCTCGGGG
TATGGGTCGGGTGGAGACAGGCCGTAGCCAACTCAGATGAGGCTGTCACG
TTCAACCTAGAGGAAATGAGCATGGTGGGGGCCGTGATGGGAATTTTGAC
GGTGGTGGGGAACGCGACGGACGGCCTGCTCAACGCCGTCGGTCTTGCGG
TGCTCCTCTACGGCCGGCGAAAGCCCCTGCAGGAAGCCCAGTGTCGCATG
GTGAAGCGGTTGTGCCTAGCCTCGCTGGCCATGGCAGGGTGGCTGTTGGG
CACGACGATCATCGGCTTCTTGATAGCGGTAAAGGGGCCCATCGGAGCTG
CGGCCGTAGCCTTCTATTCGGAGGAGTTCGACCTGGACTGCGGGAACTCG
GTGTCGGTGAGCGTCGACTACGCGTATGCGATGGCGACCCTGACGGTCCT
CTGCCAGTTTTTTATCGGGATCGTGGCGCTACCGAAACCGTCTCGCAGCT
CCCCCCAAAACCGCCGCCGCCGCTTCTGCTGTCGGTGGAACCCGGCGGGG
GTTCTGCTAGCGCGTCTAGGGCTCGGGGACTCTTCGCCGGCCTTCGACGA
AAACGAACTGCCTTCTTTCGCTGGCGAAGCGGGGCAACCGGCGGCAGCGG
AAGGGCCAGTCAAGGCGAAGGGGTCTCGACGAGGGTCTCGGCTGACGGCC
GAAGGTGTAGTAGAGGGAGGGGTCGGGAGAGAACGGAGTTTCGACCCTGT
GTGA

Synonyms

The feature 'Ec-28_003540.1' has the following synonyms


Synonym
Esi0009_0050
Esi_0009_0050