Ec-28_003530.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-28_003530.2 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI) HSP 1 Score: 311 bits (797), Expect = 9.390e-103 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 3 Query: 375 MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 842 MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV Sbjct: 1 MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 156
BLAST of Ec-28_003530.2 vs. uniprot
Match: A0A7S0L9D0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9D0_9EUKA) HSP 1 Score: 84.7 bits (208), Expect = 1.030e-15 Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 3 Query: 453 LLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVT----GVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV*TTPQDPERLLGPL 884 +LL++ D+ L+QW+ R PF +ALPVQP ++ G+D+ FR+KPT+++ S +GGL F + GE V L++ R+S GQ I K F+ER++++ +++ L G V+ VL D L GPL Sbjct: 28 VLLKVTLARCDSHGLQQWLLRRPFASALPVQPMLVLPIKDPPPLGIDLTFRRKPTMDKSSSEGGLRFAVSAPGDGEAGVVDGDGILLVTRVSSGQSIGKGFSERVLIEMLLRELQRLPGEVGA-VQAVLRP--------DSNALSGPL 166
BLAST of Ec-28_003530.2 vs. uniprot
Match: A0A7S0P2Y7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P2Y7_9EUKA) HSP 1 Score: 79.7 bits (195), Expect = 4.670e-14 Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 3 Query: 453 LLLRMDFEDADAEELRQWIRRYPFGTALPVQPF---SLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSL 782 +LL++ +++ L+ W+RR PF LP+QP +L GVDV FR+KP+ E+G+QDGG+ I G + +L++ RISEGQ K F+ER + +++V+ L Sbjct: 36 VLLQVRLSSVNSDALQDWLRRRPFAAVLPIQPMLVQALQPPQQGVDVTFRRKPSSEKGAQDGGIRIAI-----GHD-------SLLVTRISEGQYTSKAFSERALCRSIVRDL 136
BLAST of Ec-28_003530.2 vs. uniprot
Match: A0A7S2CIM1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIM1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 7.080e-10 Identity = 39/140 (27.86%), Postives = 71/140 (50.71%), Query Frame = 3 Query: 459 LRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVE------------TVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 842 + + E +EL++W++ YP+ LPVQP LV+ T + V FR+KPT +G DGG+ T+ V + D+ L +R +SEG + K +++++ K++++ L P + +VLH ++ Sbjct: 8 VALSSEAGGIDELKRWLKAYPYPAVLPVQPM-LVDREWSCDNRPDEPTAETLRVTFRRKPTDAKGPVDGGIEITLVTGVDAADHDL----ALTLRALSEGNYVDKSLSQKLLAKSIIRDLP---RVPKVSITSVLHSAML 139
BLAST of Ec-28_003530.2 vs. uniprot
Match: A0A7S4IU80_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU80_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 4.700e-7 Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 3 Query: 417 GIGGGGGEESNALLLRMDF-------------EDADAEELRQWIRRYPFGTALPVQPFSLVETVTG--VDVVFRKKPTLERGSQDGGLCFTI 647 G G G++ + LL R+ +DA E++R ++R +PF LPVQP + + T G V V F +K T E+GS DGG+ F + Sbjct: 24 GFDGAEGDDDDVLLXRLTLSVXXXXXXXXXXXKDAILEDVRSYVRSFPFAAVLPVQPLTYIPTADGGGVKVTFLRKKTKEKGSVDGGIDFDV 115 The following BLAST results are available for this feature:
BLAST of Ec-28_003530.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-28_003530.2 ID=Ec-28_003530.2|Name=Ec-28_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=251bpback to top spliced messenger RNA >Ec-28_003530.2 ID=Ec-28_003530.2|Name=Ec-28_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1332bp|location=Sequence derived from alignment at chr_28:3346513..3349661+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. TCGCCAAACCTGCTGCCTGCCCCGCCTCAGCTCGGCCTGCACAAGTGTTTback to top protein sequence of Ec-28_003530.2 >Ec-28_003530.2 ID=Ec-28_003530.2|Name=Ec-28_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=251bp MGPQTAATVAIVAICISLAQTTAVAFVATSASRAAAAAAAAAARGRRATCback to top mRNA from alignment at chr_28:3346513..3349661+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-28_003530.2 ID=Ec-28_003530.2|Name=Ec-28_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3149bp|location=Sequence derived from alignment at chr_28:3346513..3349661+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_28:3346513..3349661+ >Ec-28_003530.2 ID=Ec-28_003530.2|Name=Ec-28_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=753bp|location=Sequence derived from alignment at chr_28:3346513..3349661+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-28_003530.2' has the following synonyms
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