Ec-28_003510.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003510.1
Unique NameEc-28_003510.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length111
Homology
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BLAST of Ec-28_003510.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 4.530e-68
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVASQR 330
            MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVASQR
Sbjct:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVASQR 110
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BLAST of Ec-28_003510.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.370e-26
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRV 318
            MV LGT+V+  GLL+LLHAGYSAAH++QF   +        D+ PLDA +E +VGF +CV GV+ +A  +LP++G AGGG+S D+ E    F VF HR   LRRR 
Sbjct:    1 MVKLGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRRT 106
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BLAST of Ec-28_003510.1 vs. uniprot
Match: A0A7S2V2I7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.200e-14
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:   13 GTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSA-----PLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGK-SLDSAESTREFEVFEHRGRSLRRRV 318
            GTV+   G+ ILLHAGYSAAHF+     S      G D +     P+D  +   +GF VC+ GVL SA  L PI  + G G+ S D   S+ EF +F HRG++L +R+
Sbjct:    4 GTVIILIGMAILLHAGYSAAHFKSLVVSSVH----GADLSNVSIPPVDVVVGCAIGFSVCLLGVLTSAAPLKPIVASHGAGQGSFDEMASSPEFNIFNHRGKALSKRL 107
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BLAST of Ec-28_003510.1 vs. uniprot
Match: A0A3M6VHM6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-8
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGA-AGGGKSLDSAESTREFEVFEHRGRSLRRRVAS 324
            M  +G ++ A G L+L+HA Y +  ++ + K +  L        P +  +E +V F + + GVL ++  +LPI+   A   +SL +  S+ +F VF HRG++L +RV S
Sbjct:    1 MAIIGKLLIAMGTLLLVHASYYSVQYETYAKSTETLDA---PMPPFEVVVELVVSFLISLVGVLLTSGEMLPIRSNDALHSRSLATVISSPDFHVFNHRGKTLHKRVIS 106
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BLAST of Ec-28_003510.1 vs. uniprot
Match: A0A0L7QXM4_9HYME (Membrane magnesium transporter n=2 Tax=Apoidea TaxID=34735 RepID=A0A0L7QXM4_9HYME)

HSP 1 Score: 49.3 bits (116), Expect = 4.230e-5
Identity = 30/98 (30.61%), Postives = 52/98 (53.06%), Query Frame = 1 
Query:   22 VSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAG-GGKSLDSAESTREFEVFEHRGRSLRR 312
            ++  GLL +LHA YSAA  + + + +         + P+D  ++ +   F+ ++GV+Y A     I+       KS ++  +   F++F HRGRSLRR
Sbjct:   25 ITFIGLLSILHAAYSAAQHRSYLRITEQEF----TTLPIDILIQGIASLFMVMYGVMYIAGDFKEIRAVVDLENKSWETLRNLPSFQIFNHRGRSLRR 118
The following BLAST results are available for this feature:
BLAST of Ec-28_003510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTM7_ECTSI4.530e-68100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS2_9STRA1.370e-2650.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2I7_9STRA2.200e-1442.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3M6VHM6_9STRA2.100e-832.11Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0L7QXM4_9HYME4.230e-530.61Membrane magnesium transporter n=2 Tax=Apoidea Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3330260..3330592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog115417.EPrPW00000016196
Length333
Hectar predicted targeting categorysignal peptide
Gene idEc-28_003510.1
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0022857,GO:0022890,GO:0030176,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0034220,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072546,GO:0097708,GO:0098655,GO:0098796,GO:0098827
EggNOG free text desc.11 kDa salivary protein. Source PGD
EggNOG OGs1MHPA@121069,2S1Q8@2759,KOG3918@1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003510Ec-28_003510Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3330260..3330592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003510.1.1Ec-28_003510.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3330260..3330592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003510.1CDS:Ec-28_003510.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3330260..3330592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003510.1Ec-28_003510.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3330260..3330592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003510.1 ID=Ec-28_003510.1|Name=Ec-28_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=111bp
MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAAL
EALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGR
SLRRRVASQR*
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spliced messenger RNA

>Ec-28_003510.1 ID=Ec-28_003510.1|Name=Ec-28_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=333bp|location=Sequence derived from alignment at chr_28:3330260..3330592+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCACCTGGGAACGGTGGTTTCGGCCGCAGGCCTGTTGATCCTTCT
CCACGCTGGCTATTCCGCCGCACACTTCCAGCAGTTCAAGAAACCGTCGT
CGGCGTTGGGGGGCGGCGGCGGCGACTCGGCTCCGCTCGACGCGGCCCTC
GAAGCCCTGGTCGGCTTCTTCGTCTGCGTGTTTGGCGTCTTGTACAGCGC
CGACGCGCTCTTGCCCATCAAGGGAGCCGCGGGGGGCGGGAAGTCGCTGG
ACTCGGCCGAGTCAACGCGAGAGTTTGAAGTGTTTGAGCACAGGGGTAGA
TCGCTGAGGAGACGGGTGGCGAGCCAACGGTGA
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protein sequence of Ec-28_003510.1

>Ec-28_003510.1 ID=Ec-28_003510.1|Name=Ec-28_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=111bp
MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAAL
EALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGR
SLRRRVASQR*
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mRNA from alignment at chr_28:3330260..3330592+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003510.1 ID=Ec-28_003510.1|Name=Ec-28_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=333bp|location=Sequence derived from alignment at chr_28:3330260..3330592+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCACCTGGGAACGGTGGTTTCGGCCGCAGGCCTGTTGATCCTTCT
CCACGCTGGCTATTCCGCCGCACACTTCCAGCAGTTCAAGAAACCGTCGT
CGGCGTTGGGGGGCGGCGGCGGCGACTCGGCTCCGCTCGACGCGGCCCTC
GAAGCCCTGGTCGGCTTCTTCGTCTGCGTGTTTGGCGTCTTGTACAGCGC
CGACGCGCTCTTGCCCATCAAGGGAGCCGCGGGGGGCGGGAAGTCGCTGG
ACTCGGCCGAGTCAACGCGAGAGTTTGAAGTGTTTGAGCACAGGGGTAGA
TCGCTGAGGAGACGGGTGGCGAGCCAACGGTGA
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Coding sequence (CDS) from alignment at chr_28:3330260..3330592+

>Ec-28_003510.1 ID=Ec-28_003510.1|Name=Ec-28_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=333bp|location=Sequence derived from alignment at chr_28:3330260..3330592+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCACCTGGGAACGGTGGTTTCGGCCGCAGGCCTGTTGATCCTTCT
CCACGCTGGCTATTCCGCCGCACACTTCCAGCAGTTCAAGAAACCGTCGT
CGGCGTTGGGGGGCGGCGGCGGCGACTCGGCTCCGCTCGACGCGGCCCTC
GAAGCCCTGGTCGGCTTCTTCGTCTGCGTGTTTGGCGTCTTGTACAGCGC
CGACGCGCTCTTGCCCATCAAGGGAGCCGCGGGGGGCGGGAAGTCGCTGG
ACTCGGCCGAGTCAACGCGAGAGTTTGAAGTGTTTGAGCACAGGGGTAGA
TCGCTGAGGAGACGGGTGGCGAGCCAACGGTGA
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Synonyms
The feature 'Ec-28_003510.1' has the following synonyms
Synonym
Esi0009_0053
Esi_0009_0053