Ec-28_003450.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003450.1
Unique NameEc-28_003450.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length175
Homology
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BLAST of Ec-28_003450.1 vs. uniprot
Match: A0A6H5L5T7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5T7_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 3.490e-100
Identity = 159/174 (91.38%), Postives = 164/174 (94.25%), Query Frame = 1 
Query:    1 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRAALSTWHSVAKAETHRINCRIAAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRIIQAEFRSWKARVKAADVAVRQKNRQELRERYWRDEKAKDEHRRRDASTVMQAAWRGAAGRAVGLNRARQTLRGVLNELGGGRGRMHR 522
            MIRRFWRSSGLPLDHIFATAAGVYRRSRLR ALSTWHSVAKAETH IN RI AAEVIQRATRVFIARHTAERRRRVRGPAVLAASR+IQAEFRS KARVK ADVAVRQ+NRQELR+RYW DE AKDE RRRDASTV+QAAWRGAAGRA GLNRAR+TLRGVLNELGGGRGRMHR
Sbjct:   30 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHHINYRIEAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRMIQAEFRSRKARVKTADVAVRQQNRQELRKRYWCDETAKDEQRRRDASTVIQAAWRGAAGRAAGLNRARRTLRGVLNELGGGRGRMHR 203
The following BLAST results are available for this feature:
BLAST of Ec-28_003450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5T7_9PHAE3.490e-10091.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3272798..3273626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length525
Hectar predicted targeting categorymitochondrion
Gene idEc-28_003450.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003450Ec-28_003450Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3272798..3273626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003450.1.2Ec-28_003450.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3272798..3273293 -
Ec-28_003450.1.1Ec-28_003450.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3273598..3273626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003450.1CDS:Ec-28_003450.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3272798..3273293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003450.1Ec-28_003450.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3272798..3273626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003450.1 ID=Ec-28_003450.1|Name=Ec-28_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=175bp
MIRRFWRSSGLPLDHIFATAAGVYRRSRLRAALSTWHSVAKAETHRINCR
IAAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRIIQAEFRSWKARVK
AADVAVRQKNRQELRERYWRDEKAKDEHRRRDASTVMQAAWRGAAGRAVG
LNRARQTLRGVLNELGGGRGRMHR*
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spliced messenger RNA

>Ec-28_003450.1 ID=Ec-28_003450.1|Name=Ec-28_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=525bp|location=Sequence derived from alignment at chr_28:3272798..3273626- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCCGTTTCTGGCGTTCCTCCGGGCTTCCTTTGGATCACATATT
TGCAACCGCTGCGGGCGTATACCGTCGATCGCGCCTCCGAGCTGCGCTCT
CAACCTGGCATTCCGTGGCCAAGGCAGAAACCCACCGCATCAACTGCAGA
ATCGCGGCAGCAGAAGTCATTCAACGCGCTACACGAGTTTTTATCGCAAG
ACATACAGCTGAGCGTCGCCGCCGCGTGCGTGGTCCGGCAGTGTTGGCAG
CCTCCCGCATCATTCAGGCCGAATTTCGCTCGTGGAAAGCCCGAGTAAAG
GCTGCTGACGTAGCAGTTCGCCAGAAAAACCGACAAGAGCTTCGAGAACG
ATACTGGCGCGACGAGAAGGCGAAAGACGAACACAGGCGACGAGATGCGT
CGACCGTGATGCAAGCGGCGTGGAGGGGGGCTGCTGGGCGCGCAGTAGGA
TTGAACAGGGCACGACAAACACTGAGGGGGGTGTTGAATGAGCTGGGTGG
TGGCCGGGGGCGCATGCACAGGTAG
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protein sequence of Ec-28_003450.1

>Ec-28_003450.1 ID=Ec-28_003450.1|Name=Ec-28_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=175bp
MIRRFWRSSGLPLDHIFATAAGVYRRSRLRAALSTWHSVAKAETHRINCR
IAAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRIIQAEFRSWKARVK
AADVAVRQKNRQELRERYWRDEKAKDEHRRRDASTVMQAAWRGAAGRAVG
LNRARQTLRGVLNELGGGRGRMHR*
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mRNA from alignment at chr_28:3272798..3273626-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003450.1 ID=Ec-28_003450.1|Name=Ec-28_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=829bp|location=Sequence derived from alignment at chr_28:3272798..3273626- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATTCGCCGTTTCTGGCGTTCCTCCGGGTAAGGCTTGAGGTGAAAATT
TTGGCTATGGTTCGGTCGCGGTAGCTGGAGAGGCTTCCGCCGGAATGATG
TGAATACCGAAAAAAACTACGGTCGTGTGGCCGATATGGCGCTATCTTGG
AATGCGGGCACGCTCCAGGATTGGAGCTACTGTAACCCGGATTTCCATGT
CGAGTGAATGCTGCACCCCATCAGGAATAAACACGTCCCTTTTGCTTTAG
TGGGAGGTTATCGCGTCTCCACCGCAATCAATCGTGAAGCGCTTACACAA
ATGCCGTTTGGAATGTTCTCACCGAACCTCCAGGCTTCCTTTGGATCACA
TATTTGCAACCGCTGCGGGCGTATACCGTCGATCGCGCCTCCGAGCTGCG
CTCTCAACCTGGCATTCCGTGGCCAAGGCAGAAACCCACCGCATCAACTG
CAGAATCGCGGCAGCAGAAGTCATTCAACGCGCTACACGAGTTTTTATCG
CAAGACATACAGCTGAGCGTCGCCGCCGCGTGCGTGGTCCGGCAGTGTTG
GCAGCCTCCCGCATCATTCAGGCCGAATTTCGCTCGTGGAAAGCCCGAGT
AAAGGCTGCTGACGTAGCAGTTCGCCAGAAAAACCGACAAGAGCTTCGAG
AACGATACTGGCGCGACGAGAAGGCGAAAGACGAACACAGGCGACGAGAT
GCGTCGACCGTGATGCAAGCGGCGTGGAGGGGGGCTGCTGGGCGCGCAGT
AGGATTGAACAGGGCACGACAAACACTGAGGGGGGTGTTGAATGAGCTGG
GTGGTGGCCGGGGGCGCATGCACAGGTAG
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Coding sequence (CDS) from alignment at chr_28:3272798..3273626-

>Ec-28_003450.1 ID=Ec-28_003450.1|Name=Ec-28_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=525bp|location=Sequence derived from alignment at chr_28:3272798..3273626- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATTCGCCGTTTCTGGCGTTCCTCCGGGCTTCCTTTGGATCACATATT
TGCAACCGCTGCGGGCGTATACCGTCGATCGCGCCTCCGAGCTGCGCTCT
CAACCTGGCATTCCGTGGCCAAGGCAGAAACCCACCGCATCAACTGCAGA
ATCGCGGCAGCAGAAGTCATTCAACGCGCTACACGAGTTTTTATCGCAAG
ACATACAGCTGAGCGTCGCCGCCGCGTGCGTGGTCCGGCAGTGTTGGCAG
CCTCCCGCATCATTCAGGCCGAATTTCGCTCGTGGAAAGCCCGAGTAAAG
GCTGCTGACGTAGCAGTTCGCCAGAAAAACCGACAAGAGCTTCGAGAACG
ATACTGGCGCGACGAGAAGGCGAAAGACGAACACAGGCGACGAGATGCGT
CGACCGTGATGCAAGCGGCGTGGAGGGGGGCTGCTGGGCGCGCAGTAGGA
TTGAACAGGGCACGACAAACACTGAGGGGGGTGTTGAATGAGCTGGGTGG
TGGCCGGGGGCGCATGCACAGGTAG
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Synonyms
The feature 'Ec-28_003450.1' has the following synonyms
Synonym
Esi0009_0063
Esi_0009_0063