Ec-28_003280.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003280.1
Unique NameEc-28_003280.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length223
Homology
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BLAST of Ec-28_003280.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 5.470e-146
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 
Query:    1 MCKSSQPQGSSEAAPVAMEVPTNDSYDLAKPCAISDNEQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA 666
            MCKSSQPQGSSEAAPVAMEVPTNDSYDLAKPCAISDNEQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA
Sbjct:    1 MCKSSQPQGSSEAAPVAMEVPTNDSYDLAKPCAISDNEQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDAYVTDSSSSSSYSKGRKPKSFDA 222
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BLAST of Ec-28_003280.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 7.680e-54
Identity = 109/198 (55.05%), Postives = 139/198 (70.20%), Query Frame = 1 
Query:   67 NDSYDLAKPCAISDNEQPH---QEVIAHDEASGIIVFGSFIAGALVGVVIC------APAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQD-LSQVTDGTQIPFDGAVDAYVTDSSSSSS 630
            NDSY         D EQ H   +  +AHDE+S IIV GSF+AGALVG ++C      AP  VVLL GAGAA  TKSDSK G+ SR+VGK + D+ LA+FR+ RE+N+K++LT K ++ A+EAAGKV  ++++LGI D VK RA SLW+QVDKRTAPAGQ  I+AAQGQD +S + +  Q+ FD A DA  + S SSSS
Sbjct:   21 NDSY--------LDTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPPIRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSS 210
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BLAST of Ec-28_003280.1 vs. uniprot
Match: D8LTP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.270e-37
Identity = 96/203 (47.29%), Postives = 122/203 (60.10%), Query Frame = 1 
Query:   67 NDSYDLAKPCAISDN-EQPHQE---VIAHDEASGIIVFGSFIAGALVGVVIC------APAFVVLLFGA------------GAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQAS--IQAAQGQD-LSQVTDGTQIPFDGAVDA 600
            +DS+  AK   + +  EQ H     ++ HDE+S I + GSF+AGA VG +IC      AP   +LL GA             AA +TKSDSK G  SR+ G   SD+LLA+FR  RE+N  ++LTDK K   +EAAGKV  +M+K+GI D+V  RA SLWDQVDKRTAPA Q S  +  AQGQD +S   +  Q  FD A DA
Sbjct:   21 DDSHRHAKSFEVDNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQPSKFVHGAQGQDTISLFREEPQPGFDNAGDA 223
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BLAST of Ec-28_003280.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.000e-35
Identity = 77/147 (52.38%), Postives = 101/147 (68.71%), Query Frame = 1 
Query:  106 DNEQPH---QEVIAHDEASGIIVFGSFIAGALVGVVICA------PAFVVLLFGAGAAALTKSDSKVGKF----------SRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQV 489
            D EQ H   +  +AHDE+S II+ GSF+AGAL+G +ICA      P  VVLL GAGAA  T SDS+VGKF          SR VGK +SD+ LA+FR+ RE+N+K++L DK K+ A+EAA KV  +++++GI D VK RA SLW+QV
Sbjct:   26 DTEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
The following BLAST results are available for this feature:
BLAST of Ec-28_003280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTP8_ECTSI5.470e-146100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTQ0_ECTSI7.680e-5455.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTP9_ECTSI1.270e-3747.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUV7_9PHAE5.000e-3552.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3091872..3094639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length669
Hectar predicted targeting categorysignal anchor
Gene idEc-28_003280.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003280Ec-28_003280Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3091872..3094639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003280.1.4Ec-28_003280.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3091872..3092045 -
Ec-28_003280.1.3Ec-28_003280.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3092778..3092891 -
Ec-28_003280.1.2Ec-28_003280.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3093264..3093368 -
Ec-28_003280.1.1Ec-28_003280.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3094364..3094639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003280.1CDS:Ec-28_003280.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3091872..3092045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003280.1Ec-28_003280.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3091872..3094639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003280.1 ID=Ec-28_003280.1|Name=Ec-28_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=223bp
MCKSSQPQGSSEAAPVAMEVPTNDSYDLAKPCAISDNEQPHQEVIAHDEA
SGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKV
GKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVD
NVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDA
YVTDSSSSSSYSKGRKPKSFDA*
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spliced messenger RNA

>Ec-28_003280.1 ID=Ec-28_003280.1|Name=Ec-28_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=669bp|location=Sequence derived from alignment at chr_28:3091872..3094639- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAGTCCAGCCAACCACAGGGAAGTAGCGAGGCGGCCCCGGTAGC
GATGGAGGTCCCGACGAACGACTCATACGACCTCGCCAAACCGTGTGCGA
TATCGGACAACGAGCAACCGCACCAAGAAGTTATCGCACACGACGAGGCC
AGCGGGATCATCGTGTTCGGCTCGTTCATTGCAGGTGCATTGGTGGGGGT
AGTGATCTGCGCACCTGCTTTTGTGGTGCTACTCTTCGGGGCGGGTGCGG
CGGCCTTGACCAAGTCAGACAGCAAGGTCGGCAAGTTTTCCCGCAAAGTG
GGCAAGGTGTCCTCCGACATTCTTCTTGCAGTGTTCAGGTTGGCCAGGGA
GTACAACCACAAGCACAAGTTGACGGACAAGGCGAAGGTAGGCGCGAAAG
AAGCGGCGGGGAAGGTGACCGACAAAATGCGGAAGCTCGGCATCGTCGAC
AACGTTAAGGCCAGGGCAAGCTCCCTTTGGGATCAAGTCGACAAGCGGAC
TGCTCCTGCTGGTCAGGCTTCTATTCAGGCAGCACAAGGACAAGACCTGA
GCCAGGTTACCGACGGCACCCAGATCCCTTTCGATGGTGCCGTGGATGCC
TACGTAACAGACTCATCTTCGTCGTCGTCGTATTCCAAAGGCAGGAAGCC
CAAGTCCTTCGATGCCTGA
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protein sequence of Ec-28_003280.1

>Ec-28_003280.1 ID=Ec-28_003280.1|Name=Ec-28_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=223bp
MCKSSQPQGSSEAAPVAMEVPTNDSYDLAKPCAISDNEQPHQEVIAHDEA
SGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKV
GKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVD
NVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPFDGAVDA
YVTDSSSSSSYSKGRKPKSFDA*
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mRNA from alignment at chr_28:3091872..3094639-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003280.1 ID=Ec-28_003280.1|Name=Ec-28_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2768bp|location=Sequence derived from alignment at chr_28:3091872..3094639- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCAAGTCCAGCCAACCACAGGGAAGTAGCGAGGCGGCCCCGGTAGC
GATGGAGGTCCCGACGAACGACTCATACGACCTCGCCAAACCGTGTGCGA
TATCGGACAACGAGCAACCGCACCAAGAAGTTATCGCACACGACGAGGCC
AGCGGGATCATCGTGTTCGGCTCGTTCATTGCAGGTGCATTGGTGGGGGT
AGTGATCTGCGCACCTGCTTTTGTGGTGCTACTCTTCGGGGCGGGTGCGG
CGGCCTTGACCAAGTCAGACAGCAAGGTGGGAAAGTTGAGCTTACAGCAT
TATGTGTACAGCACTGCAGCAGACTTCAAGTCTGCGTCTGCGCGGTTGTG
TGTGTCTGCTGACAATTTCGAAGCTACTGGCAGCGGGTATCCCCTTTTGG
AAACGTGCTGCCACAGCAGTCTATGGCAGTCACAGGACTTCTCCGTCTCG
GTTTCGGAAGGTTGGCTTCTTGCACAGCCCCACAGCAGATTTGCTGGTGG
CGGGAAGTTCCACCAAGCTTCAGAGTGTAGGCGGATCCGGCCCTGTAGGC
AGGCAGTGCAGCACGCGTGTACTATGACCCGTGGGCGTCGTTTTTGCAAG
CAGGGCAACCTCCCGAGAGTGTCATTTGCTCTCAAACGCGCACGAAGAGA
TCTGAAACCGGACGCCCATGCAAACCTCAATCACTTCCAGGCATGACACA
CCCGCTATTTGCCCCACCGGCCGGGAAAATATTGGCTGCATTCCTCACCC
TCTCCCGCTGCATGTAGCCGCAACACACGGAGGAGGTGTTAGCGTGTGTT
TCAGGGCTACAGTATCGCGGGACGTATCATGAAAGCCCAAACGACCCTCC
AGTGTAGGTGGTATATTTGTAGGTGCTCCGCCTCAAAACAGGCAAAAAGT
CCGTACATGGCGTTGGCAGTACTCCCCCGGAGCGGTGGCTGGCCCGCGCC
AGACACGATATATGCCACCCGCATATACAAAGACGGAAGGGTTTCGTGGT
GCACCGTTTCCCGTGGAACCCATCTCTTACCTTTTTCTAAGTCTCGCCAT
CGGGGGTAGAGGTACTTCACGTTGAAGGCCTCTTCGCGGCTTCCGGTCAT
GCGATGGGGGTCCGCCTTACAGTGGATGTCGTCGTCGCTCCCTTCCTTGA
TGCACACAGGATGGCGATGTCCTCAAAGCGAAGAAGGAATCACTTTGCTG
CTCTCTGAAACAATTGACCCCCCTCTTGCCAACGCTACTCGGTTTTGCTT
CGTTCCTTTTTACCGCCGCAGGTCGGCAAGTTTTCCCGCAAAGTGGGCAA
GGTGTCCTCCGACATTCTTCTTGCAGTGTTCAGGTTGGCCAGGGAGTACA
ACCACAAGCACAAGTTGACGGACAAGGTGAGCACCGCGTCTCTACCCTGT
CCATCTGTAGAGTCCGCTCTGCGTAGTTCCGAGGAATGTTCTGTAGAGCT
ACTCTGCGTAGTTCCGAGGAAAGTTGCGTTTTTTCTTCAGATTCGTCAGT
TATCCTTTGTTGATGTGTCCTCTGCGGTTCAGAGGAACTCCAATATGGAG
AACAAAGGCGCACTCCCCTACGAACGGCGGCTACGGGTGCGCGATCTGTT
TTTTTTTTAATGCTCCCGTTGCTGTTGGGTTTTTGTTCGCCCTGTACCGG
CAAAGGAGCACTTTGCAAGCTTGTCTTAACGACAACATTCTTTGCCCTAC
CCAAGTCCACCGTTGTTCTGATATTCACCTATGTAATTTGTTTGCCAGGC
GAAGGTAGGCGCGAAAGAAGCGGCGGGGAAGGTGACCGACAAAATGCGGA
AGCTCGGCATCGTCGACAACGTTAAGGCCAGGGCAAGCTCCCTTTGGGAT
CAAGTCGACAAGGTTAGTGGTAGGGGACGTTGTGTGACTCTGGGGGTGAT
TTCAGAGCTTTCGCTCTGCTATTTTCTCCCCCCTAACAGCTCTGAACGCT
CAAGGCTAGACTGTTGGAAACAATCGACTCTTTGACCAACAACCGTCTTC
GTATGTTCGAGCTAGACCGCCTGTGGGCCAGGCTTCTCTGCTCGCGAAAC
TATTCGGGGAACTTCGTAGGAGACCAAAACACATAGTATTTCAAGTAAGG
GTAAATCAAATGATGCAATTATCTCCCAGGTTTCGCCCGCCATGCGATTC
CGGAGCCACGGTTTTCACAAGGCAATGCTGTCCATTTAGTTAGGCGAACA
TGTACTGCTGTAGTTTTGGTTCACAAGAATACCACGGAATGCGACTCTGT
TATCATCACCTCTTGGCAGCGGCAGCGGCTTGGCCCTTCTCCCTTTGGCG
GTTTGTTTGTAGTGGTTCAATCGGCGATCGGCCTGGACTTGAGCACCGCT
CTCGAAAACATGTCGAAACACGGGATGCAAAAATGAGTTCGTAGACAGAG
TCATGGAAGATGGAAACTTAAACTTGTGACCAGGGCGACGAGGTGTTGAC
ATGCGCGAACGTGACTTCCATCACCCTTTAGTTTTTTCCTCGATATACTC
TCCTATCTCAACCGCCACTTTACCCTCGCATCTCAGACGAATCACCTACT
CCCTCCCCCTGTTTCCGTGTCGCAAAATCTAATCCGTTTTGCAGCGGACT
GCTCCTGCTGGTCAGGCTTCTATTCAGGCAGCACAAGGACAAGACCTGAG
CCAGGTTACCGACGGCACCCAGATCCCTTTCGATGGTGCCGTGGATGCCT
ACGTAACAGACTCATCTTCGTCGTCGTCGTATTCCAAAGGCAGGAAGCCC
AAGTCCTTCGATGCCTGA
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Coding sequence (CDS) from alignment at chr_28:3091872..3094639-

>Ec-28_003280.1 ID=Ec-28_003280.1|Name=Ec-28_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=669bp|location=Sequence derived from alignment at chr_28:3091872..3094639- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCAAGTCCAGCCAACCACAGGGAAGTAGCGAGGCGGCCCCGGTAGC
GATGGAGGTCCCGACGAACGACTCATACGACCTCGCCAAACCGTGTGCGA
TATCGGACAACGAGCAACCGCACCAAGAAGTTATCGCACACGACGAGGCC
AGCGGGATCATCGTGTTCGGCTCGTTCATTGCAGGTGCATTGGTGGGGGT
AGTGATCTGCGCACCTGCTTTTGTGGTGCTACTCTTCGGGGCGGGTGCGG
CGGCCTTGACCAAGTCAGACAGCAAGGTCGGCAAGTTTTCCCGCAAAGTG
GGCAAGGTGTCCTCCGACATTCTTCTTGCAGTGTTCAGGTTGGCCAGGGA
GTACAACCACAAGCACAAGTTGACGGACAAGGCGAAGGTAGGCGCGAAAG
AAGCGGCGGGGAAGGTGACCGACAAAATGCGGAAGCTCGGCATCGTCGAC
AACGTTAAGGCCAGGGCAAGCTCCCTTTGGGATCAAGTCGACAAGCGGAC
TGCTCCTGCTGGTCAGGCTTCTATTCAGGCAGCACAAGGACAAGACCTGA
GCCAGGTTACCGACGGCACCCAGATCCCTTTCGATGGTGCCGTGGATGCC
TACGTAACAGACTCATCTTCGTCGTCGTCGTATTCCAAAGGCAGGAAGCC
CAAGTCCTTCGATGCCTGA
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Synonyms
The feature 'Ec-28_003280.1' has the following synonyms
Synonym
Esi0009_0084
Esi_0009_0084