Ec-28_002750.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_002750.1
Unique NameEc-28_002750.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length261
Homology
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BLAST of Ec-28_002750.1 vs. uniprot
Match: D8LTU3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU3_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 2.320e-136
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1 
Query:    1 MKARGSVGKPVLRVDPVTEPSSPSSSTGTSARSTPKRTLPVPPSEDAGVDNPADNEQSVGGNDSPTSSSSMLFDELSSTPPLCSLSARLFTPPSRCCGNVKQPRRYLSRDVRLPAAAAGAMADDGVGSTAESPAVRGERVAGATPAVVALGTAAEVLGKLRASRVLLTDRTSGHPTTAPFDNRPEAGNRPCSTLRYSRRRHPRTRAMSTPSS 636
            MKARGSVGKPVLRVDPVTEPSSPSSSTGTSARSTPKRTLPVPPSEDAGVDNPADNEQSVGGNDSPTSSSSMLFDELSSTPPLCSLSARLFTPPSRCCGNVKQPRRYLSRDVRLPAAAAGAMADDGVGSTAESPAVRGERVAGATPAVVALGTAAEVLGKLRASRVLLTDRTSGHPTTAPFDNRPEAGNRPCSTLRYSRRRHPRTRAMSTPSS
Sbjct:    1 MKARGSVGKPVLRVDPVTEPSSPSSSTGTSARSTPKRTLPVPPSEDAGVDNPADNEQSVGGNDSPTSSSSMLFDELSSTPPLCSLSARLFTPPSRCCGNVKQPRRYLSRDVRLPAAAAGAMADDGVGSTAESPAVRGERVAGATPAVVALGTAAEVLGKLRASRVLLTDRTSGHPTTAPFDNRPEAGNRPCSTLRYSRRRHPRTRAMSTPSS 212
The following BLAST results are available for this feature:
BLAST of Ec-28_002750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTU3_ECTSI2.320e-136100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2610666..2612320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length783
Hectar predicted targeting categoryother localisation
Gene idEc-28_002750.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002750Ec-28_002750Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 2610666..2612320 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002750.1.1Ec-28_002750.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2610666..2610801 +
Ec-28_002750.1.2Ec-28_002750.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2611381..2611816 +
Ec-28_002750.1.3Ec-28_002750.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2612110..2612320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002750.1CDS:Ec-28_002750.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 2610666..2610801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002750.1Ec-28_002750.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 2610666..2612320 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_002750.1 ID=Ec-28_002750.1|Name=Ec-28_002750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=261bp
MKARGSVGKPVLRVDPVTEPSSPSSSTGTSARSTPKRTLPVPPSEDAGVD
NPADNEQSVGGNDSPTSSSSMLFDELSSTPPLCSLSARLFTPPSRCCGNV
KQPRRYLSRDVRLPAAAAGAMADDGVGSTAESPAVRGERVAGATPAVVAL
GTAAEVLGKLRASRVLLTDRTSGHPTTAPFDNRPEAGNRPCSTLRYSRRR
HPRTRAMSTPSSPSRSTRCSTGKTRSSARRRRQHARGSHRRDRRDRRDRR
RRRRARRPRR*
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spliced messenger RNA

>Ec-28_002750.1 ID=Ec-28_002750.1|Name=Ec-28_002750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=783bp|location=Sequence derived from alignment at chr_28:2610666..2612320+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCGAGGGGATCGGTGGGAAAACCTGTTCTACGGGTTGACCCGGT
AACGGAGCCATCGTCCCCTTCTTCTTCCACGGGGACCTCCGCAAGATCAA
CACCCAAGCGGACTCTTCCTGTGCCTCCGAGCGAAGATGCCGGTGTAGAC
AACCCCGCGGACAACGAGCAGAGCGTTGGGGGCAACGACAGCCCAACAAG
CAGCTCCTCCATGCTGTTCGATGAGCTGTCGTCGACCCCACCGCTCTGTT
CGTTGTCCGCTCGGCTGTTCACGCCGCCATCTCGTTGTTGCGGCAACGTC
AAACAACCACGGCGCTACCTGTCCCGGGACGTCCGCTTGCCGGCAGCGGC
GGCGGGAGCGATGGCCGATGACGGCGTTGGCAGCACGGCGGAGTCGCCGG
CGGTTAGGGGGGAGCGTGTGGCGGGGGCGACGCCTGCGGTGGTGGCGTTG
GGTACGGCGGCGGAGGTGTTGGGCAAGCTGCGGGCTTCCCGGGTACTACT
CACCGACCGCACGAGTGGTCATCCGACGACCGCGCCGTTCGACAACCGAC
CGGAGGCGGGCAATCGACCATGTTCGACGCTGCGATACAGCCGCCGCCGC
CATCCAAGGACACGGGCGATGTCGACGCCATCATCTCCGAGTCGTTCCAC
ACGCTGTTCGACAGGGAAGACTCGATCTTCCGCTCGTCGCCGTCGCCAGC
ATGCCCGCGGTTCTCACCGCCGTGACCGCCGTGACCGCCGTGACCGCCGC
CGTCGTCGCCGTGCCCGCCGGCCTCGACGGTGA
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protein sequence of Ec-28_002750.1

>Ec-28_002750.1 ID=Ec-28_002750.1|Name=Ec-28_002750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=261bp
MKARGSVGKPVLRVDPVTEPSSPSSSTGTSARSTPKRTLPVPPSEDAGVD
NPADNEQSVGGNDSPTSSSSMLFDELSSTPPLCSLSARLFTPPSRCCGNV
KQPRRYLSRDVRLPAAAAGAMADDGVGSTAESPAVRGERVAGATPAVVAL
GTAAEVLGKLRASRVLLTDRTSGHPTTAPFDNRPEAGNRPCSTLRYSRRR
HPRTRAMSTPSSPSRSTRCSTGKTRSSARRRRQHARGSHRRDRRDRRDRR
RRRRARRPRR*
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mRNA from alignment at chr_28:2610666..2612320+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_002750.1 ID=Ec-28_002750.1|Name=Ec-28_002750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1655bp|location=Sequence derived from alignment at chr_28:2610666..2612320+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAAGCGAGGGGATCGGTGGGAAAACCTGTTCTACGGGTTGACCCGGT
AACGGAGCCATCGTCCCCTTCTTCTTCCACGGGGACCTCCGCAAGATCAA
CACCCAAGCGGACTCTTCCTGTGCCTCCGAGCGAAGGTGCGATGGTTTGC
CCAACAACGTCGCCGCCCCGGTCCACCCAAAACCAACAAGTATAGTCTAG
GCCCGCTACCACTCGCTAGCTTTGTGCTAAGTTTGTGCTTCGCCTAAACC
TTTCGCCCCCCCGCCCCCTCAAAACCATCGATGATGCATGAGCTTTTGGT
CGGCTGCTGCGTCCCAGGATGGCATGGTGATCGAGGGGGGCGGCATATGT
ACGCAGATACCAAAACCTTGGGTGGTACCAGTATTTCCCCTTCGTCTTGG
GTCGTGTCGATCCCTGCCTGTCCACTCGAAACACCATGAATTCCGGTTCG
CGTTCTGTTTGTCAAGCGGTGGATGCGCCTTCCAAAGGCGAGTACCGTCC
TGAAAGGGGCGCCGTTCAAATCTACCCTGCTGGTACCCGAATTGTGTGTA
ATCGATAAAACCCCGAATAATATTGGCGCTTATCATGAGGAATGCTCGGC
AGACCCCCCTCCCCCCGATGGGCGTCGAGTTTTTGGTTGGCGACGCCTCG
GCTTCTCACCCAAACTCCTGGACCCTATATTCTCCGTTATTGTTTGATAT
TCCCGCAACAACCAGATGCCGGTGTAGACAACCCCGCGGACAACGAGCAG
AGCGTTGGGGGCAACGACAGCCCAACAAGCAGCTCCTCCATGCTGTTCGA
TGAGCTGTCGTCGACCCCACCGCTCTGTTCGTTGTCCGCTCGGCTGTTCA
CGCCGCCATCTCGTTGTTGCGGCAACGTCAAACAACCACGGCGCTACCTG
TCCCGGGACGTCCGCTTGCCGGCAGCGGCGGCGGGAGCGATGGCCGATGA
CGGCGTTGGCAGCACGGCGGAGTCGCCGGCGGTTAGGGGGGAGCGTGTGG
CGGGGGCGACGCCTGCGGTGGTGGCGTTGGGTACGGCGGCGGAGGTGTTG
GGCAAGCTGCGGGCTTCCCGGGTACTACTCACCGACCGCACGAGTGGTCA
TCCGACGACCGCGCCGTTCGACAACCGACCGGAGGCGGGCAATCGACCAT
GGTAAGAAGTGGCCACAGCGTTTGGTTTCGCTCAACAATGCCATTGTAGT
GGTACGTTCGTGTTAGAGTATAACGTCGAGCGTCGCGGGTGCTACTTTGA
CTTTTTCTGAATACTATTGTCGTCTAGACTGTGCAGCGTCGTACGAAGGC
CCGACCTCGGGAATGTGTTGAAAAATGCCGAAATTGTAACTACAACCTGC
TTGTTCCCCACTCACCCCCCGTACTTCTCAAACCTTCCCACCCTTCCGAA
CACCCCACACCCACGCATCACCCACGCGCACCCTGTCCCTGCAGTTCGAC
GCTGCGATACAGCCGCCGCCGCCATCCAAGGACACGGGCGATGTCGACGC
CATCATCTCCGAGTCGTTCCACACGCTGTTCGACAGGGAAGACTCGATCT
TCCGCTCGTCGCCGTCGCCAGCATGCCCGCGGTTCTCACCGCCGTGACCG
CCGTGACCGCCGTGACCGCCGCCGTCGTCGCCGTGCCCGCCGGCCTCGAC
GGTGA
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Coding sequence (CDS) from alignment at chr_28:2610666..2612320+

>Ec-28_002750.1 ID=Ec-28_002750.1|Name=Ec-28_002750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=783bp|location=Sequence derived from alignment at chr_28:2610666..2612320+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAAGCGAGGGGATCGGTGGGAAAACCTGTTCTACGGGTTGACCCGGT
AACGGAGCCATCGTCCCCTTCTTCTTCCACGGGGACCTCCGCAAGATCAA
CACCCAAGCGGACTCTTCCTGTGCCTCCGAGCGAAGATGCCGGTGTAGAC
AACCCCGCGGACAACGAGCAGAGCGTTGGGGGCAACGACAGCCCAACAAG
CAGCTCCTCCATGCTGTTCGATGAGCTGTCGTCGACCCCACCGCTCTGTT
CGTTGTCCGCTCGGCTGTTCACGCCGCCATCTCGTTGTTGCGGCAACGTC
AAACAACCACGGCGCTACCTGTCCCGGGACGTCCGCTTGCCGGCAGCGGC
GGCGGGAGCGATGGCCGATGACGGCGTTGGCAGCACGGCGGAGTCGCCGG
CGGTTAGGGGGGAGCGTGTGGCGGGGGCGACGCCTGCGGTGGTGGCGTTG
GGTACGGCGGCGGAGGTGTTGGGCAAGCTGCGGGCTTCCCGGGTACTACT
CACCGACCGCACGAGTGGTCATCCGACGACCGCGCCGTTCGACAACCGAC
CGGAGGCGGGCAATCGACCATGTTCGACGCTGCGATACAGCCGCCGCCGC
CATCCAAGGACACGGGCGATGTCGACGCCATCATCTCCGAGTCGTTCCAC
ACGCTGTTCGACAGGGAAGACTCGATCTTCCGCTCGTCGCCGTCGCCAGC
ATGCCCGCGGTTCTCACCGCCGTGACCGCCGTGACCGCCGTGACCGCCGC
CGTCGTCGCCGTGCCCGCCGGCCTCGACGGTGA
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Synonyms
The feature 'Ec-28_002750.1' has the following synonyms
Synonym
Esi0009_0173
Esi_0009_0173