Ec-28_002480.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_002480.1
Unique NameEc-28_002480.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length75
Homology
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BLAST of Ec-28_002480.1 vs. uniprot
Match: A0A6H5KH43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH43_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.490e-17
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   52 APSLTNAFATWFRSVRSPSPASGGICRAVRAVSATLSSLVCPCFEMMHD 198
            APS TN FATWF   RSPSPA+GGICRAVRAVSATLSSLVCPCFE M D
Sbjct:  376 APSSTNPFATWFHFARSPSPATGGICRAVRAVSATLSSLVCPCFERMDD 424
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BLAST of Ec-28_002480.1 vs. uniprot
Match: D7G3B3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.640e-17
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   46 AAAPSLTNAFATWFRSVRSPSPASGGICRAVRAVSATLSSLVCPCFEMMHDEDDDND 216
            A A   TN F +WFRS RSPSP +G +CRA+RAVSATLSSLVCPCFE M+D D+D+D
Sbjct:  178 APASRTTNGFVSWFRSPRSPSPGTGRMCRAMRAVSATLSSLVCPCFERMYDYDNDDD 234
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BLAST of Ec-28_002480.1 vs. uniprot
Match: A0A6H5J4Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4Q7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.250e-14
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   52 APSL--TNAFATWFRSVRSPSPASGGICRAVRAVSATLSSLVCPCFEMMHDE 201
            AP+L  TN F  WFRS RSPSPA+G +CRA+RAV ATLSSLVCPCFE M+D+
Sbjct:  177 APALRTTNGFMAWFRSPRSPSPATGRMCRAMRAVLATLSSLVCPCFERMYDD 228
The following BLAST results are available for this feature:
BLAST of Ec-28_002480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KH43_9PHAE1.490e-1783.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G3B3_ECTSI3.640e-1768.42Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J4Q7_9PHAE1.250e-1471.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2307758..2308910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length225
Hectar predicted targeting categoryother localisation
Gene idEc-28_002480.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002480Ec-28_002480Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 2307758..2308910 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002480.1.1Ec-28_002480.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2307758..2307760 +
Ec-28_002480.1.2Ec-28_002480.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2308689..2308910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002480.1CDS:Ec-28_002480.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 2307758..2307760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002480.1Ec-28_002480.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 2307758..2308910 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_002480.1 ID=Ec-28_002480.1|Name=Ec-28_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=75bp
MKGARGGDGGGGGDDAAAPSLTNAFATWFRSVRSPSPASGGICRAVRAVS
ATLSSLVCPCFEMMHDEDDDNDDS*
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spliced messenger RNA

>Ec-28_002480.1 ID=Ec-28_002480.1|Name=Ec-28_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=225bp|location=Sequence derived from alignment at chr_28:2307758..2308910+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGGGCCCGCGGCGGTGACGGCGGTGGCGGCGGTGACGACGCCGC
GGCTCCGTCGCTGACGAACGCCTTCGCCACGTGGTTCCGGTCTGTCCGTT
CGCCGAGCCCGGCGTCGGGGGGGATCTGCCGGGCGGTGAGGGCGGTGTCG
GCGACATTGTCGTCGTTGGTGTGTCCGTGCTTCGAGATGATGCACGATGA
GGACGACGACAACGACGATAGCTAG
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protein sequence of Ec-28_002480.1

>Ec-28_002480.1 ID=Ec-28_002480.1|Name=Ec-28_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=75bp
MKGARGGDGGGGGDDAAAPSLTNAFATWFRSVRSPSPASGGICRAVRAVS
ATLSSLVCPCFEMMHDEDDDNDDS*
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mRNA from alignment at chr_28:2307758..2308910+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_002480.1 ID=Ec-28_002480.1|Name=Ec-28_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1153bp|location=Sequence derived from alignment at chr_28:2307758..2308910+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTAAGAAGTAGCCTTTTAGTATTTGATTTGTTACTTCAACAATACCT
CTGTAACGGTGCGTTCGTGGTTTTTGAGTACAGCGTCGAGCGTCGTGGGT
GTTGTTTTATTTTCTGAATATGATTGTCGGCTAGACGGTTCGGCGTCGTA
CCAAGCCCCGACCGTCGGGATAGTTCCAATAAAGTCGTATCTTCAACAAC
AACCTGCTTGTCCCCCTCCTCTCGAACCTTCCCACCGTTCCGCACCCCCC
CCACCCACGTCCACTCCGTCCGTGCAGTTCGACGCTGCGATTCAACCGCC
GCCGTCCAGGGACACGGGCGTTTTCGACGGCATCGTGTCGGACTCCTTCC
ACGGTCTCTTCGACAGGCAGAACTCGATCTTCCGCTCGTGGTCGTCGCCA
CCCCGCGCACCGTCGTCGCCACCACGCCCGCCGCCGCCGTCGTCGCGATC
ACCGCCGTCCTGGCCGTCCACGCCATCCGAGTCGCTGCCGCGTTCTGCAC
CTGTACCGGACAGCCACACGTGGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAGCAGCAGCAGCAGCAGTGGCCGGGGCACGGCGCCGCCGGACTGCCGTC
TGCCTTCTCTCCCGACCGCATCGGTTTGGGATGGAGTGCCAGCCGCGGAC
GAAGAGGCGGCGTCGCCACCGCCGCCGCCCCCACCGTCCCTACCGTCCCC
CCCGTCCCCGCCGTCCCCGCCGTCCCCGCCACCCGAGCAAGTCAACCTCG
GGGATTCCGCGGCGTGGCTGTTCGTCGTCGGCCCCGTGCTGCGGGAGGGA
GCGTTGACGGGTGCTGCTGCCACTGCTGCCGCTGCTCCCGCTGCTGCCGC
TGCTGCCGCCGCTGCCGCTGCCGCTGCTGCCGCAGTCTTGGACGCGCCCG
CCCCGGTCCCCGTCGCCGTCGACAACACCAGAAGGGGGCCCGCGGCGGTG
ACGGCGGTGGCGGCGGTGACGACGCCGCGGCTCCGTCGCTGACGAACGCC
TTCGCCACGTGGTTCCGGTCTGTCCGTTCGCCGAGCCCGGCGTCGGGGGG
GATCTGCCGGGCGGTGAGGGCGGTGTCGGCGACATTGTCGTCGTTGGTGT
GTCCGTGCTTCGAGATGATGCACGATGAGGACGACGACAACGACGATAGC
TAG
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Coding sequence (CDS) from alignment at chr_28:2307758..2308910+

>Ec-28_002480.1 ID=Ec-28_002480.1|Name=Ec-28_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=225bp|location=Sequence derived from alignment at chr_28:2307758..2308910+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGGGGGCCCGCGGCGGTGACGGCGGTGGCGGCGGTGACGACGCCGC
GGCTCCGTCGCTGACGAACGCCTTCGCCACGTGGTTCCGGTCTGTCCGTT
CGCCGAGCCCGGCGTCGGGGGGGATCTGCCGGGCGGTGAGGGCGGTGTCG
GCGACATTGTCGTCGTTGGTGTGTCCGTGCTTCGAGATGATGCACGATGA
GGACGACGACAACGACGATAGCTAG
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Synonyms
The feature 'Ec-28_002480.1' has the following synonyms
Synonym
Esi033_0203
Esi_033_0203