Ec-28_002400.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-28_002400.4
Unique Name	Ec-28_002400.4
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	499

Homology

[Close]

BLAST of Ec-28_002400.4 vs. uniprot
Match: A0A6H5L7Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q0_9PHAE)

HSP 1 Score: 749 bits (1935), Expect = 2.090e-248
Identity = 441/501 (88.02%), Postives = 453/501 (90.42%), Query Frame = 1

Query:  184 MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTSSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXX-TESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDGSGVSISVERATEIATIPTITPPPFQGGQQAA----AAAATSIPSVAQPSPAGETP-----EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDR 1656
            MSHW+RLLLSSL GGE VNSWPPGFGDVARPLASPRHTQN NRSLVSS SSSVASTASRVRKRRPSVLGGGFSTAGSCA+SSP SIQGSWIEDDTDPKAGPCWQQRDA RVGHPA R+GSRSDGH+DXXXXXXXXXXXX      TESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXX  YDGTANETHQVEAGVRNK KTLGGAATSIGTAIAYVG+GSDDGSGVSISVERATEI TIPTITPPPF+G QQAA    AAAATSI SVAQPSP  ETP     ++ +QSPAS+SAGEG SAKS MTPTRMGLAASAPNLPTLGSMNNESDQ SS S SRFPQVLPRQRW QEGRGASVRHRAGLAVAAGGGL GCGVL DG GQKVFHNFVFRRNKRRKDRKPLR TLASLDDNATDYQA  SAGG  GRRAAG RCGGHSSSS SGSSVEMT+SSL RRQNWE+HPSGDWDR
Sbjct:    1 MSHWERLLLSSLSGGEPVNSWPPGFGDVARPLASPRHTQNKNRSLVSSASSSVASTASRVRKRRPSVLGGGFSTAGSCAASSPNSIQGSWIEDDTDPKAGPCWQQRDADRVGHPATRKGSRSDGHEDXXXXXXXXXXXXEDHDKKTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXQQYDGTANETHQVEAGVRNKVKTLGGAATSIGTAIAYVGNGSDDGSGVSISVERATEIVTIPTITPPPFRGWQQAAPNAAAAAATSIHSVAQPSPTRETPGIVTLKVSSQSPASKSAGEGVSAKSAMTPTRMGLAASAPNLPTLGSMNNESDQRSSGSVSRFPQVLPRQRWRQEGRGASVRHRAGLAVAAGGGLEGCGVLQDGRGQKVFHNFVFRRNKRRKDRKPLRDTLASLDDNATDYQAVASAGGISGRRAAGRRCGGHSSSSCSGSSVEMTESSLRRRQNWESHPSGDWDR 501

[Close]

BLAST of Ec-28_002400.4 vs. uniprot
Match: D7FXN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN3_ECTSI)

HSP 1 Score: 694 bits (1792), Expect = 1.470e-228
Identity = 407/411 (99.03%), Postives = 408/411 (99.27%), Query Frame = 1

Query:  313 SLVSSTSSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR 1545
            S V S +SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR
Sbjct:    6 SRVVSLNSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR 416

[Close]

BLAST of Ec-28_002400.4 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.230e-15
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = -2

Query: 5043 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQV 5177
            QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQ+
Sbjct:   69 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQL 113

[Close]

BLAST of Ec-28_002400.4 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.700e-11
Identity = 49/75 (65.33%), Postives = 51/75 (68.00%), Query Frame = -2

Query: 5043 RSSGRGEQGXXXXXXXXXXXXXXXXXXXXXQLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQV 5267
            RSSGRGE G                     QLGIRE+MKAKAESDLR RKAREEEMS GATLKVAALWLVLISQ+
Sbjct:  265 RSSGRGELGDGGRAAGEGGQQQQ-------QLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQL 332

The following BLAST results are available for this feature:

BLAST of Ec-28_002400.4 vs. uniprot

BLAST of Ec-28_002400.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A6H5L7Q0_9PHAE	2.090e-248	88.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXN3_ECTSI	1.470e-228	99.03	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FXN2_ECTSI	8.230e-15	97.78	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L6Y5_9PHAE	3.700e-11	65.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:2200135..2206392 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	5270
Hectar predicted targeting category	other localisation
Gene id	Ec-28_002400.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_002400	Ec-28_002400	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_28 2200135..2206392 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002400.4	Ec-28_002400.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_28 2203724..2206208 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002400.4.3	Ec-28_002400.4.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2200135..2204011 -
Ec-28_002400.4.2	Ec-28_002400.4.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2204397..2204874 -
Ec-28_002400.4.1	Ec-28_002400.4.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2205478..2206392 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002400	3UTR:Ec-28_002400.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_28 2200135..2203723 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002400.4	CDS:Ec-28_002400.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_28 2203724..2204011 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002400	5UTR:Ec-28_002400.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_28 2206209..2206392 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_28:2200135..2206392-
coding sequence from alignment at chr_28:2200135..2206392-

mRNA sequence

>Ec-28_002400.4 ID=Ec-28_002400.4|Name=Ec-28_002400.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=499bp
MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTS
SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAG
PCWQQRDAGRVGHPAIRRGSRSDGHDDDDDDDRDEEEEEDHDNNTESTEI
TVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATATATANS
QQRQQQQYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDG
SGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGET
PEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQH
SSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGG
GQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRA
AGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRYAALRQR*

spliced messenger RNA

>Ec-28_002400.4 ID=Ec-28_002400.4|Name=Ec-28_002400.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5270bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGTCCTTTTGGTGGCAGGCGTTCTAAAGGCCATGGTGATGTCCTCCTCTA
GAGTCGTTTCGCTCAATTCTTCAGGTCAGCAGCTCTATATAAAGAACTCG
ACCAAAGACAGACAAAGACGGGGCATGTAATACCAGATTTTGAACGGTTA
TCGACTTAACTGCGACGGTCGCGTGTGGACACACATGTCGCACTGGCAGC
GGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAACAGTCAATTCCTGGCCG
CCAGGGTTTGGAGATGTTGCGAGACCTCTGGCATCGCCTAGACACACCCA
AAACAACAATCGATCCCTTGTTTCCTCAACATCGTCGTCAGTCGCAAGTA
CCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGTGCTGGGTGGCGGCTTC
TCTACGGCCGGATCATGTGCATCATCGTCCCCAAAAAGCATCCAAGGTTC
CTGGATCGAGGACGACACAGACCCGAAGGCTGGACCCTGCTGGCAGCAGC
GAGATGCCGGTCGTGTGGGCCACCCTGCAATAAGGAGAGGATCAAGATCA
GACGGCCACGACGACGACGACGACGACGACCGCGACGAAGAGGAGGAGGA
GGACCACGACAACAATACCGAAAGCACCGAGATCACTGTGGTCGGGTGGG
GAGATCGCAGCAGCAGACGTAACTCGTCACGGCGTGCCTCTCGAGAAGAG
ACGGCAGAATGGAACGATGGCCGACCGCGAAGGTTGTCTAGCAAGGGCGT
GGTGCTTGCTACAGCTACCGCCACTGCGAACTCGCAGCAGCGACAGCAGC
AGCAGTATGACGGCACAGCAAACGAGACCCACCAAGTGGAAGCTGGTGTG
CGCAACAAAGACAAAACTCTCGGAGGAGCGGCAACCAGCATCGGGACTGC
CATTGCGTACGTCGGCAGCGGCAGTGACGACGGATCGGGGGTGTCGATCA
GTGTGGAGCGCGCCACTGAAATCGCCACAATCCCGACGATCACGCCTCCC
CCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCGCAACAAGCATACC
CAGCGTCGCACAACCGTCTCCCGCTGGTGAAACACCCGAAATCGGAACCC
AATCACCGGCGTCACAGTCAGCGGGGGAGGGGGCATCAGCCAAGTCTGGA
ATGACGCCGACCAGGATGGGTCTGGCCGCATCGGCGCCGAACCTGCCAAC
CCTCGGCTCGATGAACAACGAAAGCGATCAACATAGCAGCAGAAGCGGCT
CTCGATTTCCGCAGGTGTTGCCACGGCAACGGTGGTGTCAGGAAGGGCGG
GGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCGCGGCGGGAGGAGG
GCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGGCAAAAAGTGTTCC
ACAACTTCGTGTTCCGCCGCAACAAGCGCCGCAAAGACCGGAAACCGTTG
CGCGCCACCCTGGCGTCTCTCGACGACAACGCAACGGACTACCAAGCGGC
GTATTCGGCGGGAGGCACGAGAGGAAGAAGGGCTGCGGGTTGGAGGTGTG
GCGGCCATAGCAGCAGCAGCGGCAGCGGCAGCAGCGTGGAGATGACGGAT
TCATCGCTGCATCGTCGGCAAAATTGGGAAACACACCCTTCGGGAGATTG
GGACAGGTATGCAGCGCTACGGCAGCGATGACACTGCGACACACCGACCA
TACATTTGCGGAAAGGTTGTTCAAAATGTAGAGGCACAAGGCTTGATTTT
CTAGTAGAAGAACGACGTGCTGACACGTGGTGCTTTGAGGATACATCAGT
GTTTAAGAAGAGGCGCACTTTCCGGTCTACATGAGGCGTCAGCTGGGTTC
TTCACCTTTAACTTCGTAGCTACTCTGATCTGAATCCAGTATCTCCTCTC
CCATTGAATGTTCTTCAAGGCAGTGAGACGAGCGCCGTGGTCAACACCAA
ACCAAAAACTATGGAATGAAAAAGATCAAATCAGAGAAAAATCCCACCCC
ACCAATCACACAAAGGCACAAGATCCTAGGACAACTAGTTCAGAGGGACA
AAAGCAGGGTAGGACTGGGATAACCCTGTAAGATGCTGTACAGCCCACCG
CTCCAGCTCAAAAGCTCAGCCAAGAAACAATCAAGCGCTACAGTGCAGAA
GTTCTTTCTCTCTCATTCAAGTGCCTATAGTATCGCGTCGCTCTTGTGTT
TCAGCGTTGTTGATGTCCTGCTTCTATTATTGATCTATTTGTATCTCCTC
GTTCCTACTTCAAAGGCGATGGTGACAAGTTGAACCCAGGTTTCGGGTAC
GCAAGAAATTGCCCCAAGGCTATGCATATCAAGCGAAACGAACCGGGAAA
CCCGCCTTTGCATGAGATGTGGGATGCACCGGTGGGGGAGCCGACAAGAC
CAGGGTAGTTGTGTATCACTTCGATTGCACGTTTCCCGATCGTAAGGGCT
GCGTGTTGCCCCTCCCCAACGAATCAATCGTCAACAACAACGAAAAGAAA
CTGCTACAACAGTCTCAAAACATGCAACACCCCTTCAAACATATCGTGCG
CGTGTGTCCCGCACACAACCATCAACAGACCCGAGCGCCCGGGGCAGATG
AATCGAACGTGCCCGCCCCCGCGGACGCCGAGCGACGCCTTCTCCGTCGT
AAGCTTCAGTTCTTCTGGTTCCGCTCTCTCTCCCCGTTCTTCGCCGCCGG
CGAATGGCCAGCGGGCCGGCGGTGGCACGTGCTCCAGCGGTGTAGGGAGG
AGGCCTGTGAAGTGCCAGAGGTGCGGGTCGGGCAGGGTGAAACTCTTTGC
GACGACGGTTGTATCAGCCCGCCGCTCGCCGACCCACCTTCTTCGTCAAC
CGCCTAGGGGTGCCAGCAGCGACAGTTATTGTGCAAGGGCCGGACATACG
CGGGAGAACGCTGGCGGCGGCGGTAGTCGAAACGGCGGCACCCCGAGTTA
TAGCGTTGCCGGTAGTGGTAGTAGCACGAGCTGCACAGATCGGCTTCGGT
TAGCACCGGTGAGCAATCGCCACACGCAGCGGGGAAACGCCCGTAAGGTT
ACGTCGATGTTGTCTCCACGGCGCAAGAACCTCGCGGGGTTGAGCGACAC
CGGCCGAATCAGCACGGGAGGGGTATCACTTGCGGAGCTCCGCGGAGGCG
AGAGGAACGCGGCGAACCGTCCGCGCGGGTTGATGGATGGTGCGGCGGTG
GTGGGCAGCAGGAAGGCATCGGTCAGACCACCGCCCGGCGGCGGTATCAT
CATCCCAGCACCGAAACCACACCTCAGGACGCCGGTCTCGAGCGGAGGAT
CAGGGCTCTGATACACACAGGCCCACTTGAAGAAAGCCTAGGTGTGTCCG
GAGAGGGGCGAAGCTTTCAAGAACTCACCTTGCCCCATGCTACACTGGCT
TGTAGCGAATGCTGGCACCTTGGCATTTTGGACTCTGCCGATACAAATCC
TTGGTAATATTGCGTGCAAATTGAAGATGTAACGTCAACGAGTATCATGG
AGATTGTGACCAGGCAAACATGAACAAAATGAAATGGGATTCCCAGCTGA
TGCGGCTCGACCTATGCTGGTGCGAACTTCACAAAGGTGTGTTGGTTGTG
CCCGTCTTCACGTCTGTACCGCTGCTCCTGGAGTGTGACGCCGAGGTTGC
CCTTGCCGGCCGTTCAGAGTTTTCGTTCACATCTTGGTCGCTCCTCACAC
ACTAGGCTGTTCAGAGTTCTTTTCACGTCTTGATCGCTTCTCACACAACA
CTCGTTTCGAAAACGTAACATGCGCACGCGAAGCTATCCGCCCTGTCTAA
TTTGAGGCTCTTGCTGCCTCTCGTCTTAAACAGCAACGTACACCCCAAGG
AGACGTGCGTCTCCACTCTTTTGCCGGATCAGCACTGCGCAGAGAAACGA
CATCTATTTACCACCGCATATCTCCGCCTCTCGACGTCATATTCGTTCTG
TGGCGATTGTACACAGGACGATCGGTCTCGTAAAACACGGCCTTTGTGAC
GCCTCTTCCTCTTGTGCCGATCATTCATGTCCGCCAGAAAGACTGCCACC
TCCATGCCGACAACTAAAACGCACGGGGAATCGCACTCGCACATTACAGT
TGACTTAGACGTACTCGAAATTGAAGTGCGTCGAATGCGAACCTAGAATA
ATGCTCGCACTGCAAAATCTCGATGCAGCAGAACGGTATGAACAATCGAT
TGATCCGGCGCTGAACCAACCTGACACACGCGCACCAGACCATGAATCCC
AAACCTGCAATCTTCGTCAACCCCTCTCCATGGACTATTGTTCCCTATCA
CACCACGCACAACTCTGTCCCGACCTAACACCTGACGAACCGGGTACAGC
TCCACTTATTCACACCGACAGACAAAACCAACGTGCCCCTCTCAGTCTTG
CAGAAACGTCGACGATGCGGGACCCATTGGGTCGTTCCACAACACCACCA
GTAGCCACAGCTGCAGATGGGGAGGGGGGGGGGGGGGGAGGGCTGATAAT
AGGGCATGGAGAGCTGGCGCAGACGCGGGGGGTCGTGCTTCCGAGCGAAC
CAAGCGCACAGCGAAGGTAGAGAAACCAGATGGCGGGTGCCATGACGAGC
TGTGCGTGTGCCGTAGGTTGCATGACGTAAGATACCACATACCCTGGACC
CATTTGTGCCGTAGGTTGCATGACGTAAGATACCACACACCCTGGACCCA
TTTGTGCCGTAGGTTGCATGACGTAAGATACCACATACCCTGGACCCATT
TGTGCCGTAGGTTGCATGACGTAAGATACCGCACCCCCTGAACCTTTTTT
CACAGCCCGATTACTCTGCAGCACAACCATGGACTGTGCCGAGAATGGTG
GCGTTGGAGCCTTTTTGTCGAGAGTTTTCCGAAAACGCACAATTTTATGT
TGGCATCATGTTCTTTGTGGAGTACCCGGGCTTTGGCGAATCGGTCTGAG
GTGTGTGGTATCTTACGTCATGCAACCTGCGGAAGGAGGGGGCGAGAAAG
AGGGCGGGGGAAAGCAAGAAAGAGACTGGTCGACTGAAGACGTTACCTGG
GATATCAGCACGAGCCACAGCGCGGCCACCTTGAGCGTTGCCCCCGGCGA
CATCTCCTCCTCCCTCGCCTTCCTATCTCTCAAGTCCGACTCGGCTTTCG
CCTTCATAGATTCGCGAATCCCCAGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGGCCGCCCTCCCCGGCAGCACGACCACCACCCCCCTGCTC
CCCCCTGCCAGAGCTCCTAC

protein sequence of Ec-28_002400.4

>Ec-28_002400.4 ID=Ec-28_002400.4|Name=Ec-28_002400.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=499bp
MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTS
SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAG
PCWQQRDAGRVGHPAIRRGSRSDGHDDDDDDDRDEEEEEDHDNNTESTEI
TVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATATATANS
QQRQQQQYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDG
SGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGET
PEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQH
SSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGG
GQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRA
AGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRYAALRQR*

mRNA from alignment at chr_28:2200135..2206392-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-28_002400.4 ID=Ec-28_002400.4|Name=Ec-28_002400.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6258bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGTCCTTTTGGTGGCAGGCGTTCTAAAGGCCATGGTGATGTCCTCCTCTA
GAGTCGTTTCGCTCAATTCTTCAGGTCAGCAGCTCTATATAAAGAACTCG
ACCAAAGACAGACAAAGACGGGGCATGTAATACCAGATTTTGAACGGTTA
TCGACTTAACTGCGACGGTCGCGTGTGGACACACATGTCGCACTGGCAGC
GGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAACAGTCAATTCCTGGCCG
CCAGGGTTTGGAGATGTTGCGAGACCTCTGGCATCGCCTAGACACACCCA
AAACAACAATCGATCCCTTGTTTCCTCAACATCGTCGTCAGTCGCAAGTA
CCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGTGCTGGGTGGCGGCTTC
TCTACGGCCGGATCATGTGCATCATCGTCCCCAAAAAGCATCCAAGGTTC
CTGGATCGAGGACGACACAGACCCGAAGGCTGGACCCTGCTGGCAGCAGC
GAGATGCCGGTCGTGTGGGCCACCCTGCAATAAGGAGAGGATCAAGATCA
GACGGCCACGACGACGACGACGACGACGACCGCGACGAAGAGGAGGAGGA
GGACCACGACAACAATACCGAAAGCACCGAGATCACTGTGGTCGGGTGGG
GAGATCGCAGCAGCAGACGTAACTCGTCACGGCGTGCCTCTCGAGAAGAG
ACGGCAGAATGGAACGATGGCCGACCGCGAAGGTTGTCTAGCAAGGGCGT
GGTGCTTGCTACAGCTACCGCCACTGCGAACTCGCAGCAGCGACAGCAGC
AGCAGTATGACGGCACAGCAAACGAGACCCACCAAGTGGAAGCTGGTGTG
CGCAACAAAGACAAAACTCTCGGAGGAGCGGCAACCAGCATCGGGACTGC
CATTGCGTACGTCGGGTGAGAGCTATACGTGCGCAATCAATCTCGTCCCT
AGCGGCGTCGATTCCCCGCAACTGAATCCACACCTCATTCGCCGTATTCA
ATGATAAAGACAGACTAATATAATAATGGTCAACATGTTTTGTTTGAAAA
TATTATGAATGATCATGATTCCATCGCAAAGAAGGAGTCTCCATCGTGTT
ACCGCTCAATATTACCAAACGTTTCGAACAACTCTTTGAGGGCTGTCAAG
TATTGATCGCTACAACCTTTTTGTTGAGCGATATGTACAGCAAATACATG
TTCTCGTGATGGCCGATAATGTTGAACCATTCGTACCCACAGCAGGTGTG
GCCTCTGCCGTTCTTACACTTCCTCTTGTTCAACGTTTGCCGACTTCCTT
CAGCGCCGTGAGATAGCGGGATTACTCGCCATATAGTCTGCCAAACGAAG
GCGCAGCGTCTTGAGTAGAAAATGTACTCGAGAAATAAGCGAAACAAATG
TCTGACGTTAACCCCATATATGAAGCAACAACAACCCTGTTGCATCGTGC
GGCAAGCTCGTGGTGTCTCTTTCGGCAACCCCTCTCCGCCGGCGCTGCTT
GTGTTGCTTATTCCGCAGCAGCGGCAGTGACGACGGATCGGGGGTGTCGA
TCAGTGTGGAGCGCGCCACTGAAATCGCCACAATCCCGACGATCACGCCT
CCCCCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCGCAACAAGCAT
ACCCAGCGTCGCACAACCGTCTCCCGCTGGTGAAACACCCGAAATCGGAA
CCCAATCACCGGCGTCACAGTCAGCGGGGGAGGGGGCATCAGCCAAGTCT
GGAATGACGCCGACCAGGATGGGTCTGGCCGCATCGGCGCCGAACCTGCC
AACCCTCGGCTCGATGAACAACGAAAGCGATCAACATAGCAGCAGAAGCG
GCTCTCGATTTCCGCAGGTGTTGCCACGGCAACGGTGGTGTCAGGAAGGG
CGGGGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCGCGGCGGGAGG
AGGGCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGGCAAAAAGTGA
GTGGTGACCGTGTCAGCAGGGTTTCACGAAGACAGTATCATCGCCGAGCC
TCCGATACGGCGGGGTCTCTCAACATTTTGCCTCTCTCTCCCGGAGGCCC
TGCTCCATTCGCTGTTGACGACATCTGTACGTTCAGGAGCTCCCGTGCTC
GATCTTGCCACGCTGTCAAAAAGCACAAGCAGCGTGGTCTGTGACGCGTC
AATGTCAACCACTATCATGGTGCTGCAGAAAAAATAAGCAAGGTTCACTA
CAACACGTGTTGGTGCTGCACGAAAAAAAACAAGGTTCGCAAAGTACACG
GGAGGGCAGCACTCTGGTTGATATACCACCAGCATCTATGTAGTACTTAC
CAAAACCTCGATCCCTTCCCCCCTTCCTCAGGTGTTCCACAACTTCGTGT
TCCGCCGCAACAAGCGCCGCAAAGACCGGAAACCGTTGCGCGCCACCCTG
GCGTCTCTCGACGACAACGCAACGGACTACCAAGCGGCGTATTCGGCGGG
AGGCACGAGAGGAAGAAGGGCTGCGGGTTGGAGGTGTGGCGGCCATAGCA
GCAGCAGCGGCAGCGGCAGCAGCGTGGAGATGACGGATTCATCGCTGCAT
CGTCGGCAAAATTGGGAAACACACCCTTCGGGAGATTGGGACAGGTATGC
AGCGCTACGGCAGCGATGACACTGCGACACACCGACCATACATTTGCGGA
AAGGTTGTTCAAAATGTAGAGGCACAAGGCTTGATTTTCTAGTAGAAGAA
CGACGTGCTGACACGTGGTGCTTTGAGGATACATCAGTGTTTAAGAAGAG
GCGCACTTTCCGGTCTACATGAGGCGTCAGCTGGGTTCTTCACCTTTAAC
TTCGTAGCTACTCTGATCTGAATCCAGTATCTCCTCTCCCATTGAATGTT
CTTCAAGGCAGTGAGACGAGCGCCGTGGTCAACACCAAACCAAAAACTAT
GGAATGAAAAAGATCAAATCAGAGAAAAATCCCACCCCACCAATCACACA
AAGGCACAAGATCCTAGGACAACTAGTTCAGAGGGACAAAAGCAGGGTAG
GACTGGGATAACCCTGTAAGATGCTGTACAGCCCACCGCTCCAGCTCAAA
AGCTCAGCCAAGAAACAATCAAGCGCTACAGTGCAGAAGTTCTTTCTCTC
TCATTCAAGTGCCTATAGTATCGCGTCGCTCTTGTGTTTCAGCGTTGTTG
ATGTCCTGCTTCTATTATTGATCTATTTGTATCTCCTCGTTCCTACTTCA
AAGGCGATGGTGACAAGTTGAACCCAGGTTTCGGGTACGCAAGAAATTGC
CCCAAGGCTATGCATATCAAGCGAAACGAACCGGGAAACCCGCCTTTGCA
TGAGATGTGGGATGCACCGGTGGGGGAGCCGACAAGACCAGGGTAGTTGT
GTATCACTTCGATTGCACGTTTCCCGATCGTAAGGGCTGCGTGTTGCCCC
TCCCCAACGAATCAATCGTCAACAACAACGAAAAGAAACTGCTACAACAG
TCTCAAAACATGCAACACCCCTTCAAACATATCGTGCGCGTGTGTCCCGC
ACACAACCATCAACAGACCCGAGCGCCCGGGGCAGATGAATCGAACGTGC
CCGCCCCCGCGGACGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAGTTC
TTCTGGTTCCGCTCTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCCAGC
GGGCCGGCGGTGGCACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTGAAG
TGCCAGAGGTGCGGGTCGGGCAGGGTGAAACTCTTTGCGACGACGGTTGT
ATCAGCCCGCCGCTCGCCGACCCACCTTCTTCGTCAACCGCCTAGGGGTG
CCAGCAGCGACAGTTATTGTGCAAGGGCCGGACATACGCGGGAGAACGCT
GGCGGCGGCGGTAGTCGAAACGGCGGCACCCCGAGTTATAGCGTTGCCGG
TAGTGGTAGTAGCACGAGCTGCACAGATCGGCTTCGGTTAGCACCGGTGA
GCAATCGCCACACGCAGCGGGGAAACGCCCGTAAGGTTACGTCGATGTTG
TCTCCACGGCGCAAGAACCTCGCGGGGTTGAGCGACACCGGCCGAATCAG
CACGGGAGGGGTATCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACGCGG
CGAACCGTCCGCGCGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGCAGG
AAGGCATCGGTCAGACCACCGCCCGGCGGCGGTATCATCATCCCAGCACC
GAAACCACACCTCAGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCTGAT
ACACACAGGCCCACTTGAAGAAAGCCTAGGTGTGTCCGGAGAGGGGCGAA
GCTTTCAAGAACTCACCTTGCCCCATGCTACACTGGCTTGTAGCGAATGC
TGGCACCTTGGCATTTTGGACTCTGCCGATACAAATCCTTGGTAATATTG
CGTGCAAATTGAAGATGTAACGTCAACGAGTATCATGGAGATTGTGACCA
GGCAAACATGAACAAAATGAAATGGGATTCCCAGCTGATGCGGCTCGACC
TATGCTGGTGCGAACTTCACAAAGGTGTGTTGGTTGTGCCCGTCTTCACG
TCTGTACCGCTGCTCCTGGAGTGTGACGCCGAGGTTGCCCTTGCCGGCCG
TTCAGAGTTTTCGTTCACATCTTGGTCGCTCCTCACACACTAGGCTGTTC
AGAGTTCTTTTCACGTCTTGATCGCTTCTCACACAACACTCGTTTCGAAA
ACGTAACATGCGCACGCGAAGCTATCCGCCCTGTCTAATTTGAGGCTCTT
GCTGCCTCTCGTCTTAAACAGCAACGTACACCCCAAGGAGACGTGCGTCT
CCACTCTTTTGCCGGATCAGCACTGCGCAGAGAAACGACATCTATTTACC
ACCGCATATCTCCGCCTCTCGACGTCATATTCGTTCTGTGGCGATTGTAC
ACAGGACGATCGGTCTCGTAAAACACGGCCTTTGTGACGCCTCTTCCTCT
TGTGCCGATCATTCATGTCCGCCAGAAAGACTGCCACCTCCATGCCGACA
ACTAAAACGCACGGGGAATCGCACTCGCACATTACAGTTGACTTAGACGT
ACTCGAAATTGAAGTGCGTCGAATGCGAACCTAGAATAATGCTCGCACTG
CAAAATCTCGATGCAGCAGAACGGTATGAACAATCGATTGATCCGGCGCT
GAACCAACCTGACACACGCGCACCAGACCATGAATCCCAAACCTGCAATC
TTCGTCAACCCCTCTCCATGGACTATTGTTCCCTATCACACCACGCACAA
CTCTGTCCCGACCTAACACCTGACGAACCGGGTACAGCTCCACTTATTCA
CACCGACAGACAAAACCAACGTGCCCCTCTCAGTCTTGCAGAAACGTCGA
CGATGCGGGACCCATTGGGTCGTTCCACAACACCACCAGTAGCCACAGCT
GCAGATGGGGAGGGGGGGGGGGGGGGAGGGCTGATAATAGGGCATGGAGA
GCTGGCGCAGACGCGGGGGGTCGTGCTTCCGAGCGAACCAAGCGCACAGC
GAAGGTAGAGAAACCAGATGGCGGGTGCCATGACGAGCTGTGCGTGTGCC
GTAGGTTGCATGACGTAAGATACCACATACCCTGGACCCATTTGTGCCGT
AGGTTGCATGACGTAAGATACCACACACCCTGGACCCATTTGTGCCGTAG
GTTGCATGACGTAAGATACCACATACCCTGGACCCATTTGTGCCGTAGGT
TGCATGACGTAAGATACCGCACCCCCTGAACCTTTTTTCACAGCCCGATT
ACTCTGCAGCACAACCATGGACTGTGCCGAGAATGGTGGCGTTGGAGCCT
TTTTGTCGAGAGTTTTCCGAAAACGCACAATTTTATGTTGGCATCATGTT
CTTTGTGGAGTACCCGGGCTTTGGCGAATCGGTCTGAGGTGTGTGGTATC
TTACGTCATGCAACCTGCGGAAGGAGGGGGCGAGAAAGAGGGCGGGGGAA
AGCAAGAAAGAGACTGGTCGACTGAAGACGTTACCTGGGATATCAGCACG
AGCCACAGCGCGGCCACCTTGAGCGTTGCCCCCGGCGACATCTCCTCCTC
CCTCGCCTTCCTATCTCTCAAGTCCGACTCGGCTTTCGCCTTCATAGATT
CGCGAATCCCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGG
CCGCCCTCCCCGGCAGCACGACCACCACCCCCCTGCTCCCCCCTGCCAGA
GCTCCTAC

Coding sequence (CDS) from alignment at chr_28:2200135..2206392-

>Ec-28_002400.4 ID=Ec-28_002400.4|Name=Ec-28_002400.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1497bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGCACTGGCAGCGGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAAC
AGTCAATTCCTGGCCGCCAGGGTTTGGAGATGTTGCGAGACCTCTGGCAT
CGCCTAGACACACCCAAAACAACAATCGATCCCTTGTTTCCTCAACATCG
TCGTCAGTCGCAAGTACCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGT
GCTGGGTGGCGGCTTCTCTACGGCCGGATCATGTGCATCATCGTCCCCAA
AAAGCATCCAAGGTTCCTGGATCGAGGACGACACAGACCCGAAGGCTGGA
CCCTGCTGGCAGCAGCGAGATGCCGGTCGTGTGGGCCACCCTGCAATAAG
GAGAGGATCAAGATCAGACGGCCACGACGACGACGACGACGACGACCGCG
ACGAAGAGGAGGAGGAGGACCACGACAACAATACCGAAAGCACCGAGATC
ACTGTGGTCGGGTGGGGAGATCGCAGCAGCAGACGTAACTCGTCACGGCG
TGCCTCTCGAGAAGAGACGGCAGAATGGAACGATGGCCGACCGCGAAGGT
TGTCTAGCAAGGGCGTGGTGCTTGCTACAGCTACCGCCACTGCGAACTCG
CAGCAGCGACAGCAGCAGCAGTATGACGGCACAGCAAACGAGACCCACCA
AGTGGAAGCTGGTGTGCGCAACAAAGACAAAACTCTCGGAGGAGCGGCAA
CCAGCATCGGGACTGCCATTGCGTACGTCGGCAGCGGCAGTGACGACGGA
TCGGGGGTGTCGATCAGTGTGGAGCGCGCCACTGAAATCGCCACAATCCC
GACGATCACGCCTCCCCCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCG
CCGCAACAAGCATACCCAGCGTCGCACAACCGTCTCCCGCTGGTGAAACA
CCCGAAATCGGAACCCAATCACCGGCGTCACAGTCAGCGGGGGAGGGGGC
ATCAGCCAAGTCTGGAATGACGCCGACCAGGATGGGTCTGGCCGCATCGG
CGCCGAACCTGCCAACCCTCGGCTCGATGAACAACGAAAGCGATCAACAT
AGCAGCAGAAGCGGCTCTCGATTTCCGCAGGTGTTGCCACGGCAACGGTG
GTGTCAGGAAGGGCGGGGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGG
TCGCGGCGGGAGGAGGGCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGG
GGGCAAAAAGTGTTCCACAACTTCGTGTTCCGCCGCAACAAGCGCCGCAA
AGACCGGAAACCGTTGCGCGCCACCCTGGCGTCTCTCGACGACAACGCAA
CGGACTACCAAGCGGCGTATTCGGCGGGAGGCACGAGAGGAAGAAGGGCT
GCGGGTTGGAGGTGTGGCGGCCATAGCAGCAGCAGCGGCAGCGGCAGCAG
CGTGGAGATGACGGATTCATCGCTGCATCGTCGGCAAAATTGGGAAACAC
ACCCTTCGGGAGATTGGGACAGGTATGCAGCGCTACGGCAGCGATGA

Synonyms

The feature 'Ec-28_002400.4' has the following synonyms


Synonym
Esi0033_0127
Esi_0033_0127