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Homology
BLAST of Ec-28_002360.2 vs. uniprot
Match: D7FXM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM9_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 3.720e-16 Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query: 146 VFPLAVLDNAVSLGAIIFAVHLPSMTRETTDGAKESDVTVTGSNIS 283
VFPLAVLDNAVSLGAIIFAVHLPSMTRETTDGAKESDVTVTGSNIS
Sbjct: 203 VFPLAVLDNAVSLGAIIFAVHLPSMTRETTDGAKESDVTVTGSNIS 248
BLAST of Ec-28_002360.2 vs. uniprot
Match: A0A6H5L5W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W9_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.020e-12 Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 2
Query: 146 VFPLAVLDNAVSLGAIIFAVHLPSMTRETTDGAKESDVTVTGSNISS 286
VFPLAVLDNAVSLGAIIFAVHLPSMTRETT KES VTVTGSNIS+
Sbjct: 174 VFPLAVLDNAVSLGAIIFAVHLPSMTRETTGRDKESAVTVTGSNIST 220
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 3180 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-28_002360.2 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-28_002360.2 ID=Ec-28_002360.2|Name=Ec-28_002360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=158bp MRGPGQDYCTGEEARRAHLSPSFLARRIRERASRFVSTPPLTSRGVVSST TGGSFRVGVQARPPGDCRVAPPVERAHRAKMGAEQGGSCHVERRPVCLWH CRLYVYFTTDWGCSRKNVFGWGAEVEISIDGSVQRSFAGRDPFLCFFISK MWWCCAW* back to topspliced messenger RNA >Ec-28_002360.2 ID=Ec-28_002360.2|Name=Ec-28_002360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3180bp|location=Sequence derived from alignment at chr_28:2145532..2150666- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
ATCTCCGCGTGTCATCATCTATTGACAGCCCATTCCTTGAGATGCCCTAC CAAGCCAAGGAAGCGAACTGCCACGGCCGTACGCTACTGCTGTAGCCCCC AAAACGGGTGCCACGCAAGAACTGTAACCTACTACAGACAACACGGGTGT TCCCGCTGGCCGTCCTCGACAACGCCGTAAGCCTGGGCGCCATCATTTTC GCGGTGCACCTCCCGAGCATGACACGTGAGACCACGGACGGGGCCAAGGA GTCCGACGTGACCGTGACCGGCTCAAACATCAGCAGGTCTTCCGAAGTCA TTGTGACCGTCTCGGTGTGAGTGACGGGAGCAAGCCGCCCACAATGCGCG GGCCGGGTCAGGACTACTGTACTGGGGAAGAGGCCCGCCGTGCCCATCTT TCTCCCTCTTTTCTGGCACGCCGCATACGAGAGCGGGCCTCGCGTTTCGT GAGCACGCCTCCGCTCACTAGCAGGGGTGTCGTGTCATCAACGACCGGGG GGTCCTTCAGGGTTGGCGTGCAGGCTCGCCCCCCCGGGGACTGCCGTGTT GCGCCGCCTGTTGAACGTGCGCATCGGGCGAAGATGGGGGCGGAGCAAGG AGGATCGTGCCATGTTGAGAGGAGGCCGGTCTGTCTGTGGCATTGTAGAT TGTACGTTTATTTTACGACTGACTGGGGGTGCTCACGGAAAAATGTTTTT GGTTGGGGAGCGGAGGTGGAAATATCCATTGACGGGTCTGTACAGCGGTC GTTCGCGGGGAGGGATCCATTTTTATGTTTTTTTATTTCCAAGATGTGGT GGTGTTGCGCGTGGTAGGTGGGATGCAGCCTCATCGATTCTCACGTTTCG GTTCGGTCGGTCGTCGTCGTCGTCATCGAAAACCGGGTTTGATTTTCATT CTGCCCGCACCAACAAGCAGCCAGCCTCTGTGAGTTTTCGTCATTGTTGT TGTTGAGTGTCGACCTTGAGTGTTTGACACAAGTTTTTTGCCCCTCGGGC TCGTCACTCCGGTACAAACGCCAAATAACATGCCTAGTCAACGTGTTTTA AGTATTGTTACATCGGTATCGTTACATAAATCGCTTACACCCTTGAGAGC TTACCCTTCCTTATGAGGGATCCTATCTGTGTAGGTGTGTGTCGGTGGTC CTGCGGTTCGGCCGAACTCGTCGCCACTCGAGAAATAGTAATAGTTTCAT GTGCGTGTCCCCGTGCAGGATGGCTGGGGCTGCTTTAATCATTCTGGGCT CTTGTTCAGCTACCGTTTTCAATGTTCCCTGTGCTGGGAGTGGTGGACCT GGCGTGTCCTTACTTGCAACAAGCTTCTTCTTGGCCCCGGTCGATCTCTC GGTGCGCGGCCGCGATTTTTTCGCAGCTGCAGTTGTCTATCTGGCTTTTT GTTGGTTTTTTGTTGACTTTTTGCACGTTTTTCTGTCCACGTGTGTGTGT TTGGTCGGGAGTTCTGAGAAGGATATTCAATAGGCGGTCGGTGATGGCTA ATTTTTATTTTTGCGTTGTTCGTTTCATGGAGTGGTCGTCGCTGGTAGAC GCCGAATGGGACACATCGCCCCTTTCGGGGAAAGCGAGGGCAACATAATG TGAACACTGCTTTTTTCTACCCGTATGTTTACGTTGAGTGTTGGTGTGTA AAGCGTTGGTTTCGGCATGAAAAGGAGTTCCCCTCTGAAGGACTGATGAA AGAGTTGTCACACGATTGTGTTGATGTTTACTCGTACTTTTTTTCCGTGT GTGTGTTAGCGGGGGCGGGGGGCGGGGAGGGCGGGGCTGGCGTATAGTAT TGTAATTCAGCATCCCTTGGTATGATACGGCCATCTTGGCCAGGACAACC GCCCAGGGACAGAAGAGGAAGGAGGCGTTGTTGGCGGAGGATAACCCGGC TACTCACGACGAGGTAGCTCGAAGAAGACCGGCTTTTCACAATTTCTCAT AGCGCTATCGTGGTAGCTTTTGCGAAAATGGGAGGGAAATATCGGTCTTG GTGTCAAAATTGTTTTCGTTGTCGTGGTTGCGTGAGCGACAAAATATGAT GCACTTTGTGTGTGGACGTTCGTCGAGTGCCAGAATGGAGTCGGCGCTTT GGTGTTGCGCAGTTCGAACGAGAAGCGAACGTCTTGCCGCATCTCGGGCT GTGAATGAACGTCTAGTGACGAGGAGATCTTTTTCGCGATCACGCAATAC GAGCATCATGCACAGGGAGGCGAGATGGAGAGATGAACTCTTCTTGCAGG TGAAGCATATAGCAGTAGTTTCTGAGTTAATACAGCCTCTTTGTAGGGCA GGTACAGGGAGAGGTTTCGCCTTGGATATTCCTCGGAGCATAAATAGAGG CTGCATTGACATAGTGTAAGTACGCTTCCCCTCTTTGGTAATAAGACAAT AGAGGGTTGTCGCCTTTAAGGATTTGCCGTTCTTGTTGCCTAGCCTATAA TTTAAGAGTCAACCGCATAGGTATTTTGGTCTGGGGTAGTTCGCTATCAG TCTGTCGTTCTTCGGCGCAGGTCACCGGCTGTACCTTGTACTCAGCCATA AGTTTTTATCGGTGTGCCTTCGTGCAGGGTTAAGGCTTCGCGGGATTTCA GGAAAACACACTTCCACTGGCCGCCACCTGCTGGCGAGTTCCACTCTTTA CGATAGTACGAACCATGTGTGACATAGCTCGTCGAACCGGGGAATTCCAA GTATATGTGCAGTCAGCAAGCCCTTCTTCCGCCACATCAACTCCGCCGTG TACTGCTGGGGTAGTGTGCTCCGTGGTGCTTTGTTGCTGCGTGGGGTGCT GGTGAGATGACCTGAGTCCTTAAACATACATACATATAGTCTACCATGTT GACGAAAGGAGCGGGAAGTCAGGTGCGGCCAAAAAAAGCAGGCAGGTTCG GCGGCGTGAGTGACGGGTCTGAAGGATCGTTCAGTACTCCCGTGGTCACA GAGGAAGTTCTCATTTTGACCCAACGGTCGATCTTACGAAGACTACGTCA ACATTCCTAGAGAGCATGAGTCACTCTGTGAGGGGCTGTACAAGGCCTGA CAATCGAGGGAAACTACATGTACAAATGAAAAGTGCATCATCGACAGCGA GCCGCTGTGTGCACACACATATATCGTGTTTTCACTGTTGCTCTGTTGTT CAACGCTTGGAGAGAAGTCCATGCAAGCAC back to topprotein sequence of Ec-28_002360.2 >Ec-28_002360.2 ID=Ec-28_002360.2|Name=Ec-28_002360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=158bp
MRGPGQDYCTGEEARRAHLSPSFLARRIRERASRFVSTPPLTSRGVVSST TGGSFRVGVQARPPGDCRVAPPVERAHRAKMGAEQGGSCHVERRPVCLWH CRLYVYFTTDWGCSRKNVFGWGAEVEISIDGSVQRSFAGRDPFLCFFISK MWWCCAW* back to topmRNA from alignment at chr_28:2145532..2150666- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-28_002360.2 ID=Ec-28_002360.2|Name=Ec-28_002360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5135bp|location=Sequence derived from alignment at chr_28:2145532..2150666- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATCTCCGCGTGTCATCATCTATTGACAGCCCATTCCTTGAGATGCCCTAC
CAAGCCAAGGAAGCGAACTGCCACGGCCGTACGCTACTGCTGTAGCCCCC
AAAACGGGTGCCACGCAAGAACTGTAACCTACTACAGACAACACGGGTGC
ACGCTTCTTTCGGTTCAAACAACCGTAGCATTCACTTATACGGCGGCGAA
CGCACCGGCCTTCTTTGCGTTTTAACCCTGAAACGCACCTGTCCGTTTGC
CCGGTCTGGTCGTGGCGTTGTCCTTCTTCGCGGGGAACAAACGGAAAGAA
ATTCAAGGAAGCGCTAGAATTGCTCTTCTCCCAAAATGCGTCGTGTCATC
ATTTTGGTGTCTTTCTGCGCCAAAATAACTTCCCTTATCGTCAACGGGCG
TACGAACCGAAGCGTAGTCGAAACGTAACGATAACGACAACTGCAACGGC
AACGAAGCGAAGCGAAACATAACGAAACACCACGAAACGAAACGCCACCA
GGTGTTCCCGCTGGCCGTCCTCGACAACGCCGTAAGCCTGGGCGCCATCA
TTTTCGCGGTGCACCTCCCGAGCATGACACGTGAGACCACGGACGGGGCC
AAGGAGTCCGACGTGACCGTGACCGGCTCAAACATCAGCAGGTGAGTGAT
GACAGATTCCCGGGCGGTGGTGTACTCATTGCGGCACATACCGTAGCGGT
CAGACCACTGACCTCGCAGCCGGGGCGGAGCGGGCCGGGTTCTCGCCGAA
CCAGGCTCTCACATCATGAAAGCGCGAAGCGCCGTGAGGTATTCGGCGAG
TCGCCGGGGGGTGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATT
GACCTCGCGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTACGGATGGCA
GCTGCGTATGACTTAATTTATTTTCTGGTGCTTTCACTTCCGGAGACAGT
TATAAGCACTGCTGTGTAACTGCCTCGAGGATGCTATACCATTTTAACAC
AACGTGGTGCGATCATCCCCCTTGCGCGGAGTGAGGCTTCTCAACCCCGC
ACAACATGATCTACTCGACCACCATTATGGTCACCGCAAAAAAAAAAAAC
AGAGGTAAAAAAACAAAAACGGTAACCTGGTTGCCGAGTTCACGAACTGA
ATTGGCTTGTTTTACGACGTCGTTGCCAAGCGACGAAAACCCAATCCCGA
TGGCAAACACCGGGGGGGGGGGGGGGGGGTTGTTTTAAAACGTCTTTGCC
AAACGAAAAAAACCCACCCCCCAAGGGAAACCCCGGGGGGGGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GGAGAGGGACGGAGCGTTGGACCGATCACCGTCAAGGGGGGGGGGCACTG
GACACTTTGGCCATGCCTTGATAATTCACAAAGTAAAAAAAACAAATCCC
GGCCGTAGAAAGGGGGTGACTCGCACGATGGGGATCGGCATAAGGATCAG
GCCACAATTATTGCACCTGCGGTGGGTGGGTCGCAGCCCGGGCAAAGGCA
ACCTGGGATTGCGTTCGATGTACGATACGGAAGCGTATTCAGGAGGCAGC
AAGGATGAACGGGGTTTAGGAGAAACGAGCCAGTTAATAACTGCAAAGCC
TGGCAACGTGAAAAAGCCAAGACGTGCGGCTGAACCTCCACCACATCTAG
TCTTGTTTGTGGGAATTCGCCGCCTCTCACGCGACACACACCTTGGCGGT
CACAATCGGTAAGCAGGAACGACAATAACACCCCGCGTTTGTCTAAGCAT
CGAAAGGCGTCATGTGGGTTGCTGGGATAGGCCTGGATACCTGTCTGTCT
AGTACCCAGCGGTCGGCATGTGACACGGAGTCTGTGACTCTTATCACCTA
GACAGTCTGACGGCATCTGCCAGACAAGCGCAGCGCTCGCGAGGCGGGGC
GCACTAGCTGCTGCCGTTTCATCTCTCCACGCAGCGGAGGATTGATTCTC
GGCGTCCAAGATGCCTTCTTTCTCTCGATTTCCCGTGTCTTCGCCCTCCG
CTCTCAACTCGTTTAGAACCATATAATGCGGACATCATGTCATTATTATT
TTCACACCCTATCACCGCAGAATGAATAACCCGCTCTTTTTTGCCGGGAA
TTCCGCGGGTTGTTCCGTTTGTTGTGGTGCTCGTTCGCTAGGTCTTCCGA
AGTCATTGTGACCGTCTCGGTGTGAGTGACGGGAGCAAGCCGCCCACAAT
GCGCGGGCCGGGTCAGGACTACTGTACTGGGGAAGAGGCCCGCCGTGCCC
ATCTTTCTCCCTCTTTTCTGGCACGCCGCATACGAGAGCGGGCCTCGCGT
TTCGTGAGCACGCCTCCGCTCACTAGCAGGGGTGTCGTGTCATCAACGAC
CGGGGGGTCCTTCAGGGTTGGCGTGCAGGCTCGCCCCCCCGGGGACTGCC
GTGTTGCGCCGCCTGTTGAACGTGCGCATCGGGCGAAGATGGGGGCGGAG
CAAGGAGGATCGTGCCATGTTGAGAGGAGGCCGGTCTGTCTGTGGCATTG
TAGATTGTACGTTTATTTTACGACTGACTGGGGGTGCTCACGGAAAAATG
TTTTTGGTTGGGGAGCGGAGGTGGAAATATCCATTGACGGGTCTGTACAG
CGGTCGTTCGCGGGGAGGGATCCATTTTTATGTTTTTTTATTTCCAAGAT
GTGGTGGTGTTGCGCGTGGTAGGTGGGATGCAGCCTCATCGATTCTCACG
TTTCGGTTCGGTCGGTCGTCGTCGTCGTCATCGAAAACCGGGTTTGATTT
TCATTCTGCCCGCACCAACAAGCAGCCAGCCTCTGTGAGTTTTCGTCATT
GTTGTTGTTGAGTGTCGACCTTGAGTGTTTGACACAAGTTTTTTGCCCCT
CGGGCTCGTCACTCCGGTACAAACGCCAAATAACATGCCTAGTCAACGTG
TTTTAAGTATTGTTACATCGGTATCGTTACATAAATCGCTTACACCCTTG
AGAGCTTACCCTTCCTTATGAGGGATCCTATCTGTGTAGGTGTGTGTCGG
TGGTCCTGCGGTTCGGCCGAACTCGTCGCCACTCGAGAAATAGTAATAGT
TTCATGTGCGTGTCCCCGTGCAGGATGGCTGGGGCTGCTTTAATCATTCT
GGGCTCTTGTTCAGCTACCGTTTTCAATGTTCCCTGTGCTGGGAGTGGTG
GACCTGGCGTGTCCTTACTTGCAACAAGCTTCTTCTTGGCCCCGGTCGAT
CTCTCGGTGCGCGGCCGCGATTTTTTCGCAGCTGCAGTTGTCTATCTGGC
TTTTTGTTGGTTTTTTGTTGACTTTTTGCACGTTTTTCTGTCCACGTGTG
TGTGTTTGGTCGGGAGTTCTGAGAAGGATATTCAATAGGCGGTCGGTGAT
GGCTAATTTTTATTTTTGCGTTGTTCGTTTCATGGAGTGGTCGTCGCTGG
TAGACGCCGAATGGGACACATCGCCCCTTTCGGGGAAAGCGAGGGCAACA
TAATGTGAACACTGCTTTTTTCTACCCGTATGTTTACGTTGAGTGTTGGT
GTGTAAAGCGTTGGTTTCGGCATGAAAAGGAGTTCCCCTCTGAAGGACTG
ATGAAAGAGTTGTCACACGATTGTGTTGATGTTTACTCGTACTTTTTTTC
CGTGTGTGTGTTAGCGGGGGCGGGGGGCGGGGAGGGCGGGGCTGGCGTAT
AGTATTGTAATTCAGCATCCCTTGGTATGATACGGCCATCTTGGCCAGGA
CAACCGCCCAGGGACAGAAGAGGAAGGAGGCGTTGTTGGCGGAGGATAAC
CCGGCTACTCACGACGAGGTAGCTCGAAGAAGACCGGCTTTTCACAATTT
CTCATAGCGCTATCGTGGTAGCTTTTGCGAAAATGGGAGGGAAATATCGG
TCTTGGTGTCAAAATTGTTTTCGTTGTCGTGGTTGCGTGAGCGACAAAAT
ATGATGCACTTTGTGTGTGGACGTTCGTCGAGTGCCAGAATGGAGTCGGC
GCTTTGGTGTTGCGCAGTTCGAACGAGAAGCGAACGTCTTGCCGCATCTC
GGGCTGTGAATGAACGTCTAGTGACGAGGAGATCTTTTTCGCGATCACGC
AATACGAGCATCATGCACAGGGAGGCGAGATGGAGAGATGAACTCTTCTT
GCAGGTGAAGCATATAGCAGTAGTTTCTGAGTTAATACAGCCTCTTTGTA
GGGCAGGTACAGGGAGAGGTTTCGCCTTGGATATTCCTCGGAGCATAAAT
AGAGGCTGCATTGACATAGTGTAAGTACGCTTCCCCTCTTTGGTAATAAG
ACAATAGAGGGTTGTCGCCTTTAAGGATTTGCCGTTCTTGTTGCCTAGCC
TATAATTTAAGAGTCAACCGCATAGGTATTTTGGTCTGGGGTAGTTCGCT
ATCAGTCTGTCGTTCTTCGGCGCAGGTCACCGGCTGTACCTTGTACTCAG
CCATAAGTTTTTATCGGTGTGCCTTCGTGCAGGGTTAAGGCTTCGCGGGA
TTTCAGGAAAACACACTTCCACTGGCCGCCACCTGCTGGCGAGTTCCACT
CTTTACGATAGTACGAACCATGTGTGACATAGCTCGTCGAACCGGGGAAT
TCCAAGTATATGTGCAGTCAGCAAGCCCTTCTTCCGCCACATCAACTCCG
CCGTGTACTGCTGGGGTAGTGTGCTCCGTGGTGCTTTGTTGCTGCGTGGG
GTGCTGGTGAGATGACCTGAGTCCTTAAACATACATACATATAGTCTACC
ATGTTGACGAAAGGAGCGGGAAGTCAGGTGCGGCCAAAAAAAGCAGGCAG
GTTCGGCGGCGTGAGTGACGGGTCTGAAGGATCGTTCAGTACTCCCGTGG
TCACAGAGGAAGTTCTCATTTTGACCCAACGGTCGATCTTACGAAGACTA
CGTCAACATTCCTAGAGAGCATGAGTCACTCTGTGAGGGGCTGTACAAGG
CCTGACAATCGAGGGAAACTACATGTACAAATGAAAAGTGCATCATCGAC
AGCGAGCCGCTGTGTGCACACACATATATCGTGTTTTCACTGTTGCTCTG
TTGTTCAACGCTTGGAGAGAAGTCCATGCAAGCAC back to topCoding sequence (CDS) from alignment at chr_28:2145532..2150666- >Ec-28_002360.2 ID=Ec-28_002360.2|Name=Ec-28_002360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=474bp|location=Sequence derived from alignment at chr_28:2145532..2150666- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCGCGGGCCGGGTCAGGACTACTGTACTGGGGAAGAGGCCCGCCGTGC CCATCTTTCTCCCTCTTTTCTGGCACGCCGCATACGAGAGCGGGCCTCGC GTTTCGTGAGCACGCCTCCGCTCACTAGCAGGGGTGTCGTGTCATCAACG ACCGGGGGGTCCTTCAGGGTTGGCGTGCAGGCTCGCCCCCCCGGGGACTG CCGTGTTGCGCCGCCTGTTGAACGTGCGCATCGGGCGAAGATGGGGGCGG AGCAAGGAGGATCGTGCCATGTTGAGAGGAGGCCGGTCTGTCTGTGGCAT TGTAGATTGTACGTTTATTTTACGACTGACTGGGGGTGCTCACGGAAAAA TGTTTTTGGTTGGGGAGCGGAGGTGGAAATATCCATTGACGGGTCTGTAC AGCGGTCGTTCGCGGGGAGGGATCCATTTTTATGTTTTTTTATTTCCAAG ATGTGGTGGTGTTGCGCGTGGTAG back to top
Synonyms
The feature 'Ec-28_002360.2' has the following synonyms
Synonym |
Esi0033_0120 |
Esi_0033_0120 |
|