Ec-28_002130.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_002130.1
Unique NameEc-28_002130.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length213
Homology
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BLAST of Ec-28_002130.1 vs. uniprot
Match: D7FXL2_ECTSI (Sexually induced protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXL2_ECTSI)

HSP 1 Score: 461 bits (1187), Expect = 3.410e-157
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 3 
Query:  189 MLSKLSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTILS 824
            MLSKLSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTILS
Sbjct:    1 MLSKLSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTILS 212
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BLAST of Ec-28_002130.1 vs. uniprot
Match: A0A7S2BSV2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSV2_9STRA)

HSP 1 Score: 330 bits (845), Expect = 8.680e-106
Identity = 144/206 (69.90%), Postives = 165/206 (80.10%), Query Frame = 3 
Query:  210 LLFF--AALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            LLF   A+ V    AYCPN CSGHGSCG+ND+CTCYLRPNGD AW   DCSLRTCPK AAW   A AAN+AHP VECS KG+C+R TG C CF+NY+G+ACERT+CP DCS +GFC+TEKQLAADA  TY  PWDA K VGC CD G+RGPDCSLQECPSG DV+ GDG+ +GRDCSGRGIC+Y  GLC CF G++GT C++QTIL
Sbjct:    6 LLFITLASFVAMGAAYCPNGCSGHGSCGSNDKCTCYLRPNGDAAWTSHDCSLRTCPKSAAWVAVATAANEAHPSVECSNKGSCNRKTGECDCFDNYDGIACERTVCPGDCSNHGFCYTEKQLAADASKTYTKPWDAMKHVGCVCDLGYRGPDCSLQECPSGVDVLKGDGNSKGRDCSGRGICNYGAGLCKCFTGYFGTKCQHQTIL 211
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: A0A7S2WLA1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLA1_9STRA)

HSP 1 Score: 326 bits (835), Expect = 5.810e-104
Identity = 144/212 (67.92%), Postives = 166/212 (78.30%), Query Frame = 3 
Query:  195 SKLSALLFFAALVG---TSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            S ++  L F AL G    + AYCPN CSGHGSC  ND+C CY RPNGD AW   DCSLRTCPK AAW   A AAN+AHPEVECS KG C+R TG C CFENY+G+ACERT+CPNDCSG G C+T+KQLAA+A  TY  PWDA K VGC CD G+RGPDCSL+ECPSG DV+ GDG+ +GRDCSGRGICDY+TGLC CF G++GT C++QTIL
Sbjct:   22 SVMARALLFVALAGFATLAAAYCPNGCSGHGSCSGNDKCVCYTRPNGDPAWTEHDCSLRTCPKAAAWVAVATAANEAHPEVECSNKGLCNRKTGECECFENYDGIACERTVCPNDCSGRGICYTQKQLAAEASMTYTEPWDAMKHVGCVCDLGYRGPDCSLEECPSGPDVLLGDGNEKGRDCSGRGICDYSTGLCKCFTGYFGTKCQHQTIL 233
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: Q9Y0F6_THAWE (Sexually induced protein 3 n=1 Tax=Thalassiosira weissflogii TaxID=1577725 RepID=Q9Y0F6_THAWE)

HSP 1 Score: 316 bits (810), Expect = 1.840e-100
Identity = 138/202 (68.32%), Postives = 159/202 (78.71%), Query Frame = 3 
Query:  210 LLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAW-AKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQ 812
            LL  A L+ T  AYCPN+CSGHGSCG ND+CTCYLRPNGD AW G DCS+RTCPKG AW A+EAV+ +D HP +ECS KG CDR TG C CFENY+G ACERTICPNDCSG G C  +K LAA  G TY+TPWDAEK +GCKCDAG+RGPDCS +ECPSG D++G +G  EGRDCSGRG C+Y TGLC CF G++G  C  +
Sbjct:    5 LLVLATLLATVRAYCPNACSGHGSCGINDKCTCYLRPNGDPAWTGHDCSMRTCPKGNAWVAEEAVSLDDVHPRMECSNKGMCDRETGECVCFENYDGKACERTICPNDCSGRGICLPQKSLAALEGATYDTPWDAEKHLGCKCDAGYRGPDCSQKECPSGDDILGREGGSEGRDCSGRGKCNYVTGLCQCFTGYFGNRCHIR 206
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BLAST of Ec-28_002130.1 vs. uniprot
Match: A0A812W0K4_SYMMI (Tnc protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W0K4_SYMMI)

HSP 1 Score: 313 bits (802), Expect = 2.030e-99
Identity = 139/207 (67.15%), Postives = 159/207 (76.81%), Query Frame = 3 
Query:  201 LSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            L  ++ F ++   ++AYCPN CSGHGSCGTND+CTCY R +G+ AW   DCS RTCPK AAW  +   AN+AHP VECS KG CDR TG C CFENYEG+ACERT+CPN CS  G CFTEKQLAA+A   Y++PWDAEK VGC CD G RGPDCSL ECPSGADV+ G G+  GRDCSGRG+CDYT G C CF G+YGT CEYQTIL
Sbjct:    2 LFKVVTFLSIATAAVAYCPNGCSGHGSCGTNDKCTCYARIDGEAAWTFPDCSGRTCPKSAAWIGDVAGANNAHPVVECSNKGICDRETGECQCFENYEGIACERTVCPNSCSDAGVCFTEKQLAAEASRDYDSPWDAEKHVGCICDLGRRGPDCSLVECPSGADVLKGYGNEAGRDCSGRGLCDYTDGTCSCFHGYYGTKCEYQTIL 208
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: B8CC41_THAPS (Sig3-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC41_THAPS)

HSP 1 Score: 313 bits (802), Expect = 2.170e-99
Identity = 134/206 (65.05%), Postives = 161/206 (78.16%), Query Frame = 3 
Query:  210 LLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAV-AANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTILS 824
            L+  A LV T+ A+CPN C G+GSCG ND+CTCYLRPNGD AW   DCS RTCP G+AW+ E    ANDAHP  ECS KGTCDR +G C CFENY+G ACERT+CPNDCSG G C T+K LA   G TY TPWDAEK +GCKCD G+RGPDCS +ECPSG D++GGDG+++GR+CSGRG C++ TGLC CF G++G  C++QT+LS
Sbjct:    6 LVVLATLVATAGAHCPNGCKGNGSCGINDKCTCYLRPNGDPAWTAHDCSERTCPYGSAWSSETTNGANDAHPHAECSNKGTCDRNSGECVCFENYDGKACERTLCPNDCSGRGICLTQKALAIFQGATYETPWDAEKHLGCKCDVGYRGPDCSRKECPSGEDILGGDGAVKGRECSGRGNCNFITGLCQCFDGYFGNKCQHQTVLS 211
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: A0A7S0SS37_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SS37_9STRA)

HSP 1 Score: 306 bits (784), Expect = 1.070e-96
Identity = 137/207 (66.18%), Postives = 159/207 (76.81%), Query Frame = 3 
Query:  213 LFFAALVGTSLAY----CPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            +FF+ L+   + Y    CPN CSGHGSCG+ND+CTCY R +GD AW  ADCS RTCPK  AW  E    NDAHP  ECS KGTCDR TG C C+ NY+G+AC+RTICPN CS +G CFTE QLA++AG TY+TPWDA K VGC CD G RGPDCSL ECPSGADV+GG G+  GRDCSGRGICDY++G+CGCF G+YG  CEYQT+L
Sbjct:    5 MFFSILLLLLITYIYCNCPNGCSGHGSCGSNDKCTCYTRIDGDPAWTYADCSGRTCPKAIAWVGEVSNTNDAHPLTECSNKGTCDRKTGQCICYPNYDGIACDRTICPNRCSESGVCFTEYQLASEAGRTYSTPWDANKYVGCVCDLGRRGPDCSLLECPSGADVLGGYGNETGRDCSGRGICDYSSGICGCFHGYYGHRCEYQTVL 211
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: C4B7Q8_OCHDN (Tubular mastigoneme protein n=1 Tax=Ochromonas danica TaxID=2986 RepID=C4B7Q8_OCHDN)

HSP 1 Score: 305 bits (781), Expect = 2.710e-96
Identity = 136/207 (65.70%), Postives = 156/207 (75.36%), Query Frame = 3 
Query:  201 LSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            L  +L  A L+  + A CPN C+GHGSCG ND+CTCY R +G+ AW  ADCS RTCPK +AW  +   ANDAHP VECS KG CDR TG C CF NY+G+ACER ICPN CS  G CFT+KQLA DA  TY TPWDAEK+VGC CD G RGPDCSL ECPSG DV+ G GS  GRDCSGRG+CDY++G+C CF G+YGT CEYQT+L
Sbjct:    2 LRYILLLAFLLAVAQAACPNGCNGHGSCGANDKCTCYTRIDGEPAWTYADCSGRTCPKSSAWVGDVQNANDAHPVVECSNKGVCDRKTGECKCFANYDGIACERPICPNKCSDAGVCFTQKQLAVDAARTYATPWDAEKEVGCVCDLGRRGPDCSLFECPSGPDVLKGFGSEAGRDCSGRGLCDYSSGICNCFHGYYGTKCEYQTVL 208
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: F0Y4Z3_AURAN (EGF-like domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4Z3_AURAN)

HSP 1 Score: 301 bits (771), Expect = 1.710e-94
Identity = 130/193 (67.36%), Postives = 149/193 (77.20%), Query Frame = 3 
Query:  246 AYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAA-NDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            AYCPN CSGHGSCG++D+CTCYLRPN D AW  ADCS RTCP   AW K  VA  N+ H   ECS  G CDR +G C CF+ YEG+ACERT CPNDCS  G C+T+KQLA +A  TY+TPWDA K VGC CD GFRGPDCSLQECPSG DV+ GDG+ +GRDCSGRG+CDY +GLC CF G+YGT C+ QT+L
Sbjct:   37 AYCPNGCSGHGSCGSDDRCTCYLRPNNDSAWQAADCSERTCPMDLAWVKYPVAGENNVHESTECSNMGICDRKSGECECFDGYEGIACERTSCPNDCSARGICYTQKQLATEAATTYDTPWDAMKHVGCVCDLGFRGPDCSLQECPSGTDVLSGDGNTKGRDCSGRGLCDYDSGLCKCFSGYYGTKCQQQTVL 229
[Close]
BLAST of Ec-28_002130.1 vs. uniprot
Match: A0A7S2NU76_9STRA (Hypothetical protein n=2 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A7S2NU76_9STRA)

HSP 1 Score: 291 bits (746), Expect = 2.430e-90
Identity = 131/222 (59.01%), Postives = 160/222 (72.07%), Query Frame = 3 
Query:  162 DHTTTFV*KMLSKLSALLFFAALVGTSL-AYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAG-GTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTIL 821
            +HT     KM+   + ++F  A   ++  AYCPN CSGHGSCG ND+CTCYL PN + AW   DCS RTCP G AW  E V+ +DAHP VECS KGTCDRATG C CF NY G ACERT+CPN+C G+G C TE  LA D G  +Y  PWD++K VGCKCD G+RG DC+ +ECPSG DV+GG G+ EGR+CSGRG+C+Y  GLC CF G+YG  C++QT+L
Sbjct:   38 NHTHNSDAKMMGFNTKIVFVLATFASNCQAYCPNGCSGHGSCGVNDKCTCYLDPNNNPAWTEHDCSKRTCPLGTAWVGEPVSEDDAHPLVECSNKGTCDRATGDCKCFPNYGGKACERTLCPNNCGGHGICMTESALAHDHGEASYVLPWDSQKHVGCKCDVGYRGVDCTEKECPSGPDVLGGQGATEGRECSGRGLCNYGDGLCKCFTGYYGNRCQHQTVL 259
The following BLAST results are available for this feature:
BLAST of Ec-28_002130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL2_ECTSI3.410e-157100.00Sexually induced protein 3 n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2BSV2_9STRA8.680e-10669.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WLA1_9STRA5.810e-10467.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
Q9Y0F6_THAWE1.840e-10068.32Sexually induced protein 3 n=1 Tax=Thalassiosira w... [more]
A0A812W0K4_SYMMI2.030e-9967.15Tnc protein n=1 Tax=Symbiodinium microadriaticum T... [more]
B8CC41_THAPS2.170e-9965.05Sig3-like protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S0SS37_9STRA1.070e-9666.18Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
C4B7Q8_OCHDN2.710e-9665.70Tubular mastigoneme protein n=1 Tax=Ochromonas dan... [more]
F0Y4Z3_AURAN1.710e-9467.36EGF-like domain-containing protein n=2 Tax=Aureoco... [more]
A0A7S2NU76_9STRA2.430e-9059.01Hypothetical protein n=2 Tax=Coscinodiscophyceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1960576..1965640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue4.9e-127
Seed eggNOG ortholog2880.D7FXL2
Preferred namesig3
Length2121
Hectar predicted targeting categorysignal peptide
Gene idEc-28_002130.1
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002130Ec-28_002130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1960576..1965641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002130.1Ec-28_002130.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1961869..1965451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002130.1.4Ec-28_002130.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1960576..1961954 -
Ec-28_002130.1.3Ec-28_002130.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1962918..1963069 -
Ec-28_002130.1.2Ec-28_002130.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1963595..1963810 -
Ec-28_002130.1.1Ec-28_002130.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1965267..1965640 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0021303UTR:Ec-28_002130.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1960576..1961868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002130.1CDS:Ec-28_002130.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1961869..1961954 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0021305UTR:Ec-28_002130.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1965452..1965640 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_002130.1 ID=Ec-28_002130.1|Name=Ec-28_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=213bp
MLSKLSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAW
IGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFEN
YEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCD
AGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGF
YGTMCEYQTILS*
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spliced messenger RNA

>Ec-28_002130.1 ID=Ec-28_002130.1|Name=Ec-28_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr_28:1960576..1965640- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCCCGAGCACGCTCTCTCTTCGTAGCGCAACCTCTTCCTCGCGACAACAA
AGAAGCTTGCAGCACATCCCTCCACACACCCGCCAGACGACAAGAAAGCA
AGCAAGAAGGCCAAACGACTGCTGCAGTACGGAACTCCGCCATCCCATCG
CGCTTTCGTGGGATCATACCACAACCTTCGTGTAGAAAGATGTTGTCGAA
GCTGTCCGCCCTGCTCTTCTTCGCCGCCCTGGTGGGTACGTCCCTGGCCT
ACTGCCCGAACTCCTGCAGCGGCCACGGGTCCTGCGGGACCAACGACCAG
TGCACATGCTACCTCCGTCCGAACGGGGACGTGGCTTGGATCGGGGCTGA
TTGCTCGCTCCGCACCTGCCCAAAGGGCGCGGCCTGGGCGAAGGAGGCAG
TGGCCGCCAACGACGCTCACCCGGAGGTGGAGTGCTCGGCGAAGGGCACC
TGCGACCGAGCCACGGGCATCTGCACGTGCTTCGAGAACTACGAGGGCGT
GGCCTGCGAGAGGACCATCTGCCCCAACGACTGCTCCGGGAACGGGTTCT
GCTTCACCGAGAAGCAGCTGGCCGCTGATGCCGGGGGAACGTACAACACG
CCCTGGGACGCCGAGAAGCAGGTCGGGTGCAAGTGCGACGCTGGGTTCCG
CGGCCCCGACTGCTCCCTTCAGGAGTGCCCCTCCGGCGCCGACGTCATGG
GCGGGGACGGCTCGATCGAGGGCCGAGACTGCTCCGGTCGTGGCATCTGC
GACTACACCACCGGGCTGTGCGGGTGCTTCCTCGGCTTCTACGGCACCAT
GTGCGAGTACCAGACCATCTTATCATAAGAAAAGGGAGGACGGGGCGCAA
GTCCATTGCCCACAACATTCCTTAGGGTCGTGGAGACGAGGTGATTGCGC
CGCCGGTGGCGGCAACGCTGCGTGGCACGCAGACGGGATCGTCATCCCCC
CCCCCGTATCTCACTATCTTAGAGTGAAAACATGGCGGGCGGTGTTAGCC
GGGAGCAGTAGCAGTGGCAACAGCAGTAGAGCGTTTTTTTTTTTTCTGTC
ACCACTAACACCCTTCCTTGCCGGAATCTCAGGCAACCAACGAAACGATC
AGAAAGGAAAATTATGCTGCTGCTGAATGGATCGTCTACATTTTTTTTAG
TCTCGACGTCTGTTTCTTTCTTTCTTTTGCGGGTTTTGGTCGGTGCGTTC
AAGTCGGGAAAGGCACCACCCGGGTTGTGTTGCACTCGAAAAACTTGTGA
GAAAAAATAGTTACTACGATAGGAATCTTGTTTTTCGAGCCTTTTCTGTA
ACATTCTCCCTTGAGCAAGACAGGGATGCTGTTTGTTGTGCAAGGGCTGC
ACACCAACAACTCTTTCGACACCGAGTTTAGGCGGATGGGCGGGGGGGGG
AGGGGCACAGAACGGGGGTCGGAATTGAGCGGACAATTCAGTCAAATTTT
TCGTTGTGCTTGCTGATTCGTCGGAACTAGCGTCATAGCCTATTCGGTGG
TGGGTCAACAAGTATTGTTTGCACAACCAACGGTGCTTGACTGTGCAGAA
AACCAACTGCGGTTGACGTCTTCATTGTGTCAATCATGTAGTTTCCTTTT
TACGTCACCCAGATCTTGCGCGTGAATGGCGGGGGGGGAGGGCGAGCGGG
CGCGGACTGTCCATGCTTAGTTGTGGCGGCGAGACCTGGGAAGACGAAAA
AAAAATAGCTACAGTACACCACCATCCATCCATCCTTGGCTGAATAGAGT
CTGGTGAAAACAAACCTGGGGGAAAGAGGTTGATGTAGGAGGGAAGGGTG
AACACTCATCACAACTGCCAGTCATGAAAAAGACGTGGGTGGGAAGACAT
CACCTTTTGGTCCCGTACTGCTCGTCTGCGCTGAGACTGCTCTGTTGCCC
CGTGTACCTGCCCCCGCCTCGGCTAGACGGTGCTTGATTTCGAACCACTC
TCTTTCTTGTGTTTTTCAGAGACGATGGCAAGCAGTCGGGATGCGTAGGT
GTCGCAAAGTTTGGTCTTTCTTTTTTTCGAATGTCAGCCTGTTTTCATCT
GGAAGTAGGAAGATGTCGAAGCGAAATGAGGGCAGAAGCGGCCGATATTG
GACATTCGGAGGAGGGGGGGG
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protein sequence of Ec-28_002130.1

>Ec-28_002130.1 ID=Ec-28_002130.1|Name=Ec-28_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=213bp
MLSKLSALLFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAW
IGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFEN
YEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCD
AGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGF
YGTMCEYQTILS*
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mRNA from alignment at chr_28:1960576..1965640-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_002130.1 ID=Ec-28_002130.1|Name=Ec-28_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5065bp|location=Sequence derived from alignment at chr_28:1960576..1965640- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCCCGAGCACGCTCTCTCTTCGTAGCGCAACCTCTTCCTCGCGACAACAA
AGAAGCTTGCAGCACATCCCTCCACACACCCGCCAGACGACAAGAAAGCA
AGCAAGAAGGCCAAACGACTGCTGCAGTACGGAACTCCGCCATCCCATCG
CGCTTTCGTGGGATCATACCACAACCTTCGTGTAGAAAGATGTTGTCGAA
GCTGTCCGCCCTGCTCTTCTTCGCCGCCCTGGTGGGTACGTCCCTGGCCT
ACTGCCCGAACTCCTGCAGCGGCCACGGGTCCTGCGGGACCAACGACCAG
TGCACATGCTACCTCCGTCCGAACGGGGACGTGGCTTGGATCGGGGCTGA
TTGCTCGCTCCGCACCTGCCCAAAGTGAGTCCAGGTTGAGCAAGAACCAC
CCTTCGTTGGTGTGTACCCGTAAAACGACCAGATGGTGGTGTGACTGCGT
CTCAGGTTATCTTGGTTTGCCGAATCCTGGGACGACAACACCGCGAGCGT
AGCTCTTTCGTGCGGCTTTTCGCCAGTGCCTCCTGTTTGCCGGACCGGTG
CACGAAAAAGAGGCGTGGTGTGCGGTCTGTCGGCGGGTCGGTCCACGAGG
AGATGTTGTGGCACGGCCGGCATCCCCGTGTTTGGTGAAAGAGTGTGCGC
GCTTGTCGACTTTATAGCTGCAACCCCGATTATTGCGAGTAGGAAAAGAC
GACTCCATTTGTGTACGGCCGGTGCTGCCCGGTGGTCTTCAGGGAACACA
GGCTCACTCGACGCAAGAGTGGATGTTTTCCTTGCGAAACCGCAAGATCA
TTCAACACGTGTCCCTGAAAGTAGCCCGCGAGAGCACACGCTCGGCTTCC
GCATAAAAAAAGTTAATGTGAAATAAGACGAAACGTAGGGCTATTCTCCA
AAAAACATGGCGTATCCGCAGCTCCTTGCTCACGAAGAGGCTGTGTATCT
GTGCGTCCTTCGGAACACGCATGCCTCCTCAGTAACAACCTTTTGCTGTC
GTTGTCGTTGTTATTGTTGTTGTTGCTGTTGGTGGTGGTGGTGGTGTTGT
TGTCGTTGTCGTTGTCGTTGTTCTGGTCCCTCACATGGACCTCTATCCTT
CTTCCATAAGAACTCTTCAGGGTGTGAGTGCAGTCCCAACGGTTGACGCT
AGTCTACCGTACCTACCCTTGGTAAATGTTTTCGGTCACATCAGCCGGAG
TATCAGGCATACAGGTAGAGAAGGGAAATACCATGGTCAAACCATGTCAC
GAAAGCATTCAGAGCACTCGTGAAGGAATCGAGGTTGCCTACACATCGTA
AGACAACAAGCAGGGAAGTGTAGAAATAGCAAAAAGAAAATGCAAATGGA
GAGCACTTTGCTCCAATCACTCGGACGCTGACACTTACATTCACACAAAC
GAAAACACTAGACCACTCCATACAAAGAAGATAATATACTTGAACGTTCA
TTTTCAGCTCTTGCCCGGTTCTTTGGTAGACGGGCCAGGATATTTCGCGG
GCTACGCTGAAACCCATCACAGGCGAGTTCCAGCCCTTTTCCCCTCGGGG
ACTCCACTGGAACCAGATAAAGCCGAACAATAGCATCCATGATTCAACCA
AGAACTAAACGCCAGGATCTTGCATGGCTACCGGCAGCCAACTCATCGCG
CCGAGACTCCATATGGAACAAAATGCCACACCACTTTTCTACGCGTATTA
TAGCTCTCCTCTCTATCTGTTTGTCTACCTGTCTGTTTGTCTGTCTCTGT
CTGTCTCTTTCGCGCGCGCGCGCTCTCTCTCCCTCTCTCTCTCTCTACCT
CCCTCAACCCCCCCCCCCCCCCCTACCCAGGGGCGCGGCCTGGGCGAAGG
AGGCAGTGGCCGCCAACGACGCTCACCCGGAGGTGGAGTGCTCGGCGAAG
GGCACCTGCGACCGAGCCACGGGCATCTGCACGTGCTTCGAGAACTACGA
GGGCGTGGCCTGCGAGAGGACCATCTGCCCCAACGACTGCTCCGGGAACG
GGTTCTGCTTCACCGAGAAGCAGCTGGCCGCTGATGCCGGGGGAACGTGA
GTAGACCATTCCTACGTGCACCGTCAATATGTTTTTGCCAATATTCTCCC
TTCAATGTGCCCCGTACTGATGAGGGAAAAGGGAGAACGCCTGGGTGCTC
TCGCCGTACGACTTATCCCTGGCTCGAACACCAGCGCAAATGTCGACAAT
TGGTCGAATCCCATTATAGCTACCCCCCCCAAACTTGTGGCACAACCCCA
AAAGAGCTACAGCTTCGCGAAGCCCCCGCCCCGACTCTGCGCCTTATAGT
TACACAATCAATCATCGAGAATTGGCACATCCTTCGTCCACCGTGCAACC
GGCACCAGCATCATCAGTCGCCAGTTTACCCTCCCCACCCCACCGCGTGG
CGCTTCACGCTTGATGATGTGCTAGCCTGGTCCGGTGAAAACCCGGCGTG
CTCCGTCCATGCTTGGTAGGGATGCGGGGTCAATGGCCTAGCGCATGCAC
GGCTATAAGTGCACCCACCCGCACCGGTCAGACCCTACACTAAAAACGCC
TCTCCTCTCTACCAACAACAGGTACAACACGCCCTGGGACGCCGAGAAGC
AGGTCGGGTGCAAGTGCGACGCTGGGTTCCGCGGCCCCGACTGCTCCCTT
CAGGAGTGCCCCTCCGGCGCCGACGTCATGGGCGGGGACGGCTCGATCGA
GGGCCGAGACTGCTCCGGTCGTGGTGAGTGTTGGTTCGTCGAGGAGGTTG
CTTGGTTTCGGAATATCTCCTGTCTACACATTCAACAGCACCTGTTCTAC
AATAACTAGGTGTCTACATATATCAGTGTCCAAAGTTGTTGTTGTTGTTG
TTGTTGGTGGTGGTGGTGTATTTACACTTGTAAAAACGTTCCGCTCTCCG
CTTAGGGCCTTCCAATACCCGTTCTGGCCCAACTGACGGGGACGCCCTCG
CGGTCATAAGCCAACTACCCAAAGAGAGGTACACCTTTCTTCAGTAGAAC
GAAAAAAAAAAAGAGGGCCCAGAAAAAACAAAGTGTGCGCATCTGCGTTC
TTGCACTCTAGCTTCTCTGGATTGGGTACTCGTAAGGTATAAGGTCCCAT
GGCGCAGGGGTTCCACACAGGGACAACATGTATGCAGGGTGGAAAGGGCC
AAGGCATCCCGCAGTGTCTGCGGTAGCACACGCCTTCGGCACTCTCGGTG
GACAATTCGGCAATTCCCTACCCGGAATAGGCTAATTTGTCCCACACCTC
TCCCGCTCCTCGTCACCCCGGTTCAAGCGGCAAACCCTAACCAACACCCA
CGCATTATTGATCCGGTCGCCCCGGTGGTCTAGTTGGTATCCTCGACACC
TTCTAGAGGTCAGGTCAGGGGTTCGAATCCGGGCGTAAGCGAGCTTTTCT
TGCAGAGCGAGTTTTTCTCTCGCTTCCGCTCCTGGTCTAGTGGATAGCGC
TAGTTCGTGTGTACACGGAGGGAAGAGAGTGCTGGACTCTTCTCGCATTA
AAAATCGAAGGCAAAGTACCGCAGGAGGGGAGGGTAGAGAGGGGCTCTTC
TGTGTGACCACGGGTTGGAGTAAACGGCACTAGTGCTGTGAGCGCTGATT
TGAAGTGAAGACAAAAAAAAAAAAAAGATGTCCTTGCCCGTCTACCCCTC
TTCACGTACACGACACCTGCGTGACGATTCTCTCAGGCATCTGCGACTAC
ACCACCGGGCTGTGCGGGTGCTTCCTCGGCTTCTACGGCACCATGTGCGA
GTACCAGACCATCTTATCATAAGAAAAGGGAGGACGGGGCGCAAGTCCAT
TGCCCACAACATTCCTTAGGGTCGTGGAGACGAGGTGATTGCGCCGCCGG
TGGCGGCAACGCTGCGTGGCACGCAGACGGGATCGTCATCCCCCCCCCCG
TATCTCACTATCTTAGAGTGAAAACATGGCGGGCGGTGTTAGCCGGGAGC
AGTAGCAGTGGCAACAGCAGTAGAGCGTTTTTTTTTTTTCTGTCACCACT
AACACCCTTCCTTGCCGGAATCTCAGGCAACCAACGAAACGATCAGAAAG
GAAAATTATGCTGCTGCTGAATGGATCGTCTACATTTTTTTTAGTCTCGA
CGTCTGTTTCTTTCTTTCTTTTGCGGGTTTTGGTCGGTGCGTTCAAGTCG
GGAAAGGCACCACCCGGGTTGTGTTGCACTCGAAAAACTTGTGAGAAAAA
ATAGTTACTACGATAGGAATCTTGTTTTTCGAGCCTTTTCTGTAACATTC
TCCCTTGAGCAAGACAGGGATGCTGTTTGTTGTGCAAGGGCTGCACACCA
ACAACTCTTTCGACACCGAGTTTAGGCGGATGGGCGGGGGGGGGAGGGGC
ACAGAACGGGGGTCGGAATTGAGCGGACAATTCAGTCAAATTTTTCGTTG
TGCTTGCTGATTCGTCGGAACTAGCGTCATAGCCTATTCGGTGGTGGGTC
AACAAGTATTGTTTGCACAACCAACGGTGCTTGACTGTGCAGAAAACCAA
CTGCGGTTGACGTCTTCATTGTGTCAATCATGTAGTTTCCTTTTTACGTC
ACCCAGATCTTGCGCGTGAATGGCGGGGGGGGAGGGCGAGCGGGCGCGGA
CTGTCCATGCTTAGTTGTGGCGGCGAGACCTGGGAAGACGAAAAAAAAAT
AGCTACAGTACACCACCATCCATCCATCCTTGGCTGAATAGAGTCTGGTG
AAAACAAACCTGGGGGAAAGAGGTTGATGTAGGAGGGAAGGGTGAACACT
CATCACAACTGCCAGTCATGAAAAAGACGTGGGTGGGAAGACATCACCTT
TTGGTCCCGTACTGCTCGTCTGCGCTGAGACTGCTCTGTTGCCCCGTGTA
CCTGCCCCCGCCTCGGCTAGACGGTGCTTGATTTCGAACCACTCTCTTTC
TTGTGTTTTTCAGAGACGATGGCAAGCAGTCGGGATGCGTAGGTGTCGCA
AAGTTTGGTCTTTCTTTTTTTCGAATGTCAGCCTGTTTTCATCTGGAAGT
AGGAAGATGTCGAAGCGAAATGAGGGCAGAAGCGGCCGATATTGGACATT
CGGAGGAGGGGGGGG
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Coding sequence (CDS) from alignment at chr_28:1960576..1965640-

>Ec-28_002130.1 ID=Ec-28_002130.1|Name=Ec-28_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=639bp|location=Sequence derived from alignment at chr_28:1960576..1965640- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGTCGAAGCTGTCCGCCCTGCTCTTCTTCGCCGCCCTGGTGGGTAC
GTCCCTGGCCTACTGCCCGAACTCCTGCAGCGGCCACGGGTCCTGCGGGA
CCAACGACCAGTGCACATGCTACCTCCGTCCGAACGGGGACGTGGCTTGG
ATCGGGGCTGATTGCTCGCTCCGCACCTGCCCAAAGGGCGCGGCCTGGGC
GAAGGAGGCAGTGGCCGCCAACGACGCTCACCCGGAGGTGGAGTGCTCGG
CGAAGGGCACCTGCGACCGAGCCACGGGCATCTGCACGTGCTTCGAGAAC
TACGAGGGCGTGGCCTGCGAGAGGACCATCTGCCCCAACGACTGCTCCGG
GAACGGGTTCTGCTTCACCGAGAAGCAGCTGGCCGCTGATGCCGGGGGAA
CGTACAACACGCCCTGGGACGCCGAGAAGCAGGTCGGGTGCAAGTGCGAC
GCTGGGTTCCGCGGCCCCGACTGCTCCCTTCAGGAGTGCCCCTCCGGCGC
CGACGTCATGGGCGGGGACGGCTCGATCGAGGGCCGAGACTGCTCCGGTC
GTGGCATCTGCGACTACACCACCGGGCTGTGCGGGTGCTTCCTCGGCTTC
TACGGCACCATGTGCGAGTACCAGACCATCTTATCATAA
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Synonyms
The feature 'Ec-28_002130.1' has the following synonyms
Synonym
Esi0033_0091
Esi_0033_0091
SIG3