Ec-28_001980.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001980.1
Unique NameEc-28_001980.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length355
Homology
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: D7FXJ9_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ9_ECTSI)

HSP 1 Score: 601 bits (1549), Expect = 1.320e-209
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 
Query:  205 MGATGSLHVVVTTALLLLPGGDGFFSVVPRCATSSRAGVALYSSATSDDVRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV 1113
            MGATGSLHVVVTTALLLLPGGDGFFSVVPRCATSSRAGVALYSSATSDDVRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV
Sbjct:    1 MGATGSLHVVVTTALLLLPGGDGFFSVVPRCATSSRAGVALYSSATSDDVRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV 303
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: A0A6H5JYC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC1_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.850e-58
Identity = 107/162 (66.05%), Postives = 119/162 (73.46%), Query Frame = 1 
Query:  634 IKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV*F 1119
            +KNT GDRPE ADPAYES Y IST WVARDG+GLRGRVEI+ T                       EGQDLDAWR VIGVRD EGTK+KG LS LKEKAA+LMLKVVFGF+GPAD LG RGELS EMKRSP G+ +++YLDEE+ VTRG +G LVVV RV F
Sbjct:    1 MKNTCGDRPEPADPAYESPYDISTHWVARDGNGLRGRVEIAETY----------------------EGQDLDAWRNVIGVRDTEGTKEKGRLSMLKEKAAKLMLKVVFGFRGPADNLGRRGELSCEMKRSPSGHFEVLYLDEEIWVTRGHKGTLVVVTRVLF 140
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: A0A835ZKX0_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX0_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.670e-47
Identity = 123/303 (40.59%), Postives = 158/303 (52.15%), Query Frame = 1 
Query:  220 SLHVVVTTALLLLPGGDGFFSVVPRCATSSRAGVALYSSATSDDVRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRP--ENADPAYESNYVISTRWVARD---GSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV 1113
            + HV   +  + LP    F       A++SR  V   S+ T+ D      AK  L   L  + G T  + V  AV+ L+  NPT+  A    L  G +A+ G +F    R   G ECTLGRL FN+FEP  LPV I  I NT+ D P     D   E  Y +   +VAR    G  LRG V +SG CW D     R+ V F  G + P +GQDL  W  V   R  EG K+K P   L +K   LMLK+  GFQ PAD    +G   Y M R P+GYLDI+YLD+ +RVTRG +G++VVV+RV
Sbjct:   22 AFHVHSQSPGVRLPARSAF-----AAASTSRGSVLCMSAVTARD------AKEELAKQLQANEGDTKNDAVAVAVDALSKTNPTTDGALQRELLKGAFATTGFNFPDGKRGPLGWECTLGRLAFNLFEPTKLPVSITHIVNTLEDVPAERQGDRPGELTYDLVNSFVARSPESGVELRGEVAVSGVCWPDSKDANRLRVAFGAGELRPAQGQDLAEWEAVFKPR--EG-KEK-PRVPLGKKLTNLMLKLFMGFQPPADA--GQGVQRYTMNRPPEGYLDILYLDDALRVTRGNRGSIVVVERV 307
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: UPI0014073A4C (fimbrial protein n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI0014073A4C)

HSP 1 Score: 144 bits (362), Expect = 4.160e-35
Identity = 91/255 (35.69%), Postives = 136/255 (53.33%), Query Frame = 1 
Query:  364 EAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDGVEC-TLGRLVFNIFEPVNLPVLIVAIKNTI---GDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV 1113
            +AAK  LR+AL   GG    + + AA+E L   NPT  PA+ + L  G W  +    F    R +DG     LGRL FN+F+P +L V I  +   +   GDR  ++      + V++   +   G  L+G+V   G C  +P     + V+FT G +EP    D   W++V G R         P S+ KE+   L L+++FGF  P       G+  ++MKRSPKG L+I+YLDEE+R+TRG++G ++V +RV
Sbjct:    6 QAAKQALRNALTHCGGDPQQDAIAAALEDLVRLNPTPDPAQRFDLAQGNWRLISAPSFPDGERQEDGTYVYRLGRLAFNLFQPQDLRVQIDEVWQPVFPLGDRSRHSH-----DIVVTFTTLGTAGPPLQGQVRNLGVC--EPQDETHIQVQFTGGVLEPIAQTDRQQWQQVFGDR------TDTPRSSWKERGQGLFLRLMFGFVPPGAMDPQTGKREFQMKRSPKGTLEILYLDEELRITRGEKGTVLVCERV 247
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: A0A6B3MA84_9CYAN (Fimbrial protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3MA84_9CYAN)

HSP 1 Score: 139 bits (351), Expect = 1.420e-33
Identity = 89/256 (34.77%), Postives = 135/256 (52.73%), Query Frame = 1 
Query:  349 DVRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDG-VECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 1110
            D R  EAAK  LR ALA SGG+T  E V AA++ L   NPT++PA++  L   +W  +   +F G  +  DG    TLGRL FN+F+P  L ++I  +   +         +++   V+    +      L G V+  G C   P     + V+FT G++ P EG ++  W+ V G +   G K      + +EK      K++FG   P       GE+S+ M RSP+G L+I+YLD+E+R+TRG +G L+V +R
Sbjct:    5 DTRKCEAAKIALRQALAASGGNTKDEAVIAAIDNLTQLNPTTAPARSETLLDSQWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPVRLLENKQQRSHD--IVVEFTTIDESFPKLSGIVKNQGVC--HPISDTLLQVKFTGGTLAPQEGMNIKDWQAVFGKQHQPGKK------SWQEKLMSGFFKLIFGLVPPKAMNPDTGEVSFTMNRSPRGSLEILYLDQELRITRGNKGTLLVSER 250
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: B1X0M5_CROS5 (PAP_fibrillin domain-containing protein n=1 Tax=Crocosphaera subtropica (strain ATCC 51142 / BH68) TaxID=43989 RepID=B1X0M5_CROS5)

HSP 1 Score: 136 bits (342), Expect = 2.200e-32
Identity = 90/251 (35.86%), Postives = 129/251 (51.39%), Query Frame = 1 
Query:  364 EAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDGVEC-TLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 1110
            +AAK+ LR AL +  G    E V A +E L   NPT +P  +  L S EW  +    F    +  +G    TLGRL FN+F+P NL V+I  +K  I    E     +  + V+    +  D   L+G +   G C+  P     V V FT G + P   QDL+ W++V      E + +KG    LKE     +LK++FG   P       GE+++EMKRSPKG   I+YLDEE+R+ +G +G +VV+ R
Sbjct:    8 DAAKTALRDALQQYDGDVKHEVVKAKIEQLCELNPTVAPTHSDRLESAEWMLISAPSFPQGEKLPNGQYAYTLGRLAFNLFKPTNLKVVIDCVKQPILKLEEVNK--FSHDIVVEFTVIDSDFPKLKGLIYNLGICY--PDTDNTVQVEFTGGKLSPQPNQDLNLWKQVFNQ---EKSDNKG----LKEAFTSFILKIIFGLVPPNAMNNQTGEITFEMKRSPKGKSSILYLDEEIRINKGDKGTVVVLQR 247
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: A0A6B3N4N3_9CYAN (Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3N4N3_9CYAN)

HSP 1 Score: 136 bits (342), Expect = 2.320e-32
Identity = 87/256 (33.98%), Postives = 134/256 (52.34%), Query Frame = 1 
Query:  349 DVRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDG-VECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 1110
            D    E AK+ LR ALA +GG+T  E V AA++ L   NPT++PA++  L   EW  +   +F G  +  DG    TLGRL FN+F+P  L ++I  +   +         +++   V+    +      L G V   G C   P    ++ V+FT G++ P EG ++  W++V G +     K      + +E+      +++FG   P       GE+S+ M RSPKG L+I+YLDEEMR+TRG++G L+V  R
Sbjct:    5 DTGKCETAKTALRQALAANGGNTKDEAVIAAIDNLTQLNPTTAPARSETLLDSEWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPVRLLENKQQRSHD--IVVEFTTIDESFPKLTGIVHNQGVC--HPISDTKLQVKFTGGTLAPQEGTNIKDWQEVFGKQRQSSQK------SWQERFISGFFRLMFGLVPPQAMNPDTGEVSFTMNRSPKGSLEILYLDEEMRITRGEKGTLLVCQR 250
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: E0UHU9_GLOV7 (PAP fibrillin family protein n=1 Tax=Gloeothece verrucosa (strain PCC 7822) TaxID=497965 RepID=E0UHU9_GLOV7)

HSP 1 Score: 135 bits (340), Expect = 4.420e-32
Identity = 85/252 (33.73%), Postives = 133/252 (52.78%), Query Frame = 1 
Query:  364 EAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDG-VECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDRV 1113
            +A K+ LR ALA  GG+T  E V  A+E L   NPT++P++   L  G W  +   +F G    + G    TLGRL FN+F+PV L ++I  +   +   P N       + ++    +  +   ++G V   G C  +P     + V+FT   ++P E Q+LD W+ +   +       K    + KEK   +M K++FG   P       GE+S+ M+R PKG LDIIY+DEE+R+TRG++G ++V  R+
Sbjct:    9 QALKTELREALATYGGNTKHEVVINAIEKLQAVNPTTAPSRNNNLLDGNWLLISAPNFPGGELLEHGKYSYTLGRLAFNMFQPVKLKLVIDRVLQPVF--PVNNGQQRSHDIIVEFTTIEDNLPEIKGIVHNFGIC--EPKTDSSLQVQFTGSMMKPQEQQNLDVWKSLFNQQ------SKSSNKSWKEKVGAVMAKIMFGLVPPEQMNPKTGEVSFSMRRPPKGSLDIIYVDEELRITRGEKGTVLVCQRL 250
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: UPI000D1F42B3 (fimbrial protein n=1 Tax=Cyanothece sp. BG0011 TaxID=2082950 RepID=UPI000D1F42B3)

HSP 1 Score: 135 bits (339), Expect = 5.570e-32
Identity = 88/251 (35.06%), Postives = 133/251 (52.99%), Query Frame = 1 
Query:  364 EAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDGVEC-TLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 1110
            +AAK+ LR AL +  G    E V A +E L   NPT +P+ +  L S EW  +    F    +  +G    TLGRL FN+F+P NL V+I  +K  +    E    +++   ++    +  +   L+G V   G C+  P+  E + V FT G + P   QDL  W++V      E + +KG    LKE     +LK++FG   P       GE+ ++MKRSPKG L I+YLDEE+R+T G++G ++V +R
Sbjct:    8 DAAKTALREALKQYDGDVKHEAVKAKIEQLCELNPTVAPSHSDRLESAEWRLISAPSFPQGEKLPNGQYAYTLGRLAFNMFQPTNLKVVIDCVKQPVILLDEEEKRSHD--IIVEFTVIDPNFPELKGLVHNLGICY--PATDETLQVEFTGGKLTPQADQDLSVWKQVFNT---EKSDNKG----LKELFTSFILKLMFGLVPPKAMNEETGEIYFQMKRSPKGKLKILYLDEEIRITLGEKGTILVCER 247
[Close]
BLAST of Ec-28_001980.1 vs. uniprot
Match: UPI00146A6814 (fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 TaxID=2546229 RepID=UPI00146A6814)

HSP 1 Score: 134 bits (338), Expect = 9.100e-32
Identity = 86/249 (34.54%), Postives = 129/249 (51.81%), Query Frame = 1 
Query:  370 AKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLHSGEWASVGE-DFKGTTRTKDGV-ECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 1110
            AK+ L  AL   GG+     V AA+  LA  NPT +PA+A     G+W  +    F G     DG    TLGRL FN+F+P  L ++I  +   +      AD A+ ++ ++           L+GRV   G C   P+   ++ V+FT G +EP    D D W +V G        D  P   LK +   L+LK++FG   P       G + ++M+RSPKG L+I+YLD+++R+TRG++G ++V DR
Sbjct:   17 AKAALYQALQAHGGNPAQAPVAAAIARLATLNPTPAPAQATDRLEGDWRLISAPSFPGGELLADGCYSYTLGRLAFNMFQPQTLKLVIDQVSQPVWPI---ADGAHHTHDIVVDFTTLDLEVPLQGRVRNLGIC--QPATANQLQVQFTGGVLEPAVDSDRDHWHQVFG------DPDASPRPGLKARLQGLVLKLMFGLVPPKAMAADTGRIEFQMRRSPKGRLEILYLDDDLRITRGEKGTILVCDR 254
The following BLAST results are available for this feature:
BLAST of Ec-28_001980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXJ9_ECTSI1.320e-209100.00PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JYC1_9PHAE3.850e-5866.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKX0_9STRA2.670e-4740.59PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
UPI0014073A4C4.160e-3535.69fimbrial protein n=1 Tax=Aphanocapsa montana TaxID... [more]
A0A6B3MA84_9CYAN1.420e-3334.77Fimbrial protein n=1 Tax=Symploca sp. SIO2E9 TaxID... [more]
B1X0M5_CROS52.200e-3235.86PAP_fibrillin domain-containing protein n=1 Tax=Cr... [more]
A0A6B3N4N3_9CYAN2.320e-3233.98Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 ... [more]
E0UHU9_GLOV74.420e-3233.73PAP fibrillin family protein n=1 Tax=Gloeothece ve... [more]
UPI000D1F42B35.570e-3235.06fimbrial protein n=1 Tax=Cyanothece sp. BG0011 Tax... [more]
UPI00146A68149.100e-3234.54fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1767587..1776517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score600.9
Seed ortholog evalue3.9e-169
Seed eggNOG ortholog2880.D7FXJ9
Length2307
Hectar predicted targeting categoryother localisation
Gene idEc-28_001980.1
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28N1U@1,2S7IC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001980Ec-28_001980Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1767587..1776517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001980.1Ec-28_001980.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1767639..1775327 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001980.1.1Ec-28_001980.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1767587..1768034 +
Ec-28_001980.1.2Ec-28_001980.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1771301..1771376 +
Ec-28_001980.1.3Ec-28_001980.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1774093..1774517 +
Ec-28_001980.1.4Ec-28_001980.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1775160..1776517 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0019805UTR:Ec-28_001980.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1767587..1767638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001980.1CDS:Ec-28_001980.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1767639..1768034 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0019803UTR:Ec-28_001980.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1775328..1776517 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001980.1 ID=Ec-28_001980.1|Name=Ec-28_001980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=355bp
MRTNAGPHDKDGTVQYNARTQSRAWAPSTFPAADTPTAGPTDRRTPAPRS
VMGATGSLHVVVTTALLLLPGGDGFFSVVPRCATSSRAGVALYSSATSDD
VRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLH
SGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIG
DRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLV
RFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKV
VFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVV
VDRV*
back to top

spliced messenger RNA

>Ec-28_001980.1 ID=Ec-28_001980.1|Name=Ec-28_001980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2307bp|location=Sequence derived from alignment at chr_28:1767587..1776517+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CAAGCGTGAGTGGTCTTGTGTCTAGACTACCGACGCGTATGTATATGCGG
ACATGCGGACAAACGCTGGTCCCCACGACAAAGACGGGACTGTACAATAC
AACGCGCGCACCCAATCGCGCGCGTGGGCCCCTTCGACCTTTCCAGCAGC
TGACACGCCGACAGCGGGGCCAACAGATAGACGCACGCCCGCTCCACGTT
CGGTCATGGGTGCTACTGGTAGCCTCCACGTAGTCGTCACGACTGCTCTG
CTTCTCCTACCTGGCGGTGACGGTTTCTTCTCAGTCGTTCCGCGATGCGC
CACCAGCAGCCGGGCCGGTGTTGCACTGTATTCATCTGCCACGTCGGATG
ATGTCCGTTCTGCCGAGGCCGCCAAGAGTAACCTCAGGAGTGCGTTGGCG
GAGAGCGGAGGGTCTACTCTTGCCGAGGGTGTCGGGGCTGCGGTAGAGGT
GCTGGCCAATTTCAACCCCACATCCTCCCCTGCTAAGGCATGGCCACTGC
ACAGCGGAGAGTGGGCTTCCGTAGGGGAGGACTTCAAGGGCACGACTCGC
ACCAAAGACGGAGTGGAGTGCACCCTAGGGCGGCTTGTGTTCAACATCTT
TGAGCCCGTGAACCTCCCCGTCCTGATAGTGGCCATCAAGAATACCATTG
GGGACCGCCCCGAAAACGCTGACCCGGCGTACGAATCCAATTACGTGATC
TCGACTCGCTGGGTGGCCCGCGACGGGAGCGGGCTCAGGGGACGCGTGGA
GATCTCAGGGACCTGCTGGGAAGACCCTTCCATGCCGGAACGCGTCTTGG
TGCGGTTCACGAAGGGCTCCATTGAACCAGACGAGGGGCAAGACCTCGAC
GCCTGGCGTAAGGTCATCGGCGTGCGGGATGTCGAGGGCACCAAAGACAA
AGGGCCGCTGTCCACCCTGAAGGAGAAAGCCGCAAGGTTGATGCTCAAGG
TGGTGTTCGGTTTTCAGGGGCCCGCGGACGGCCTGGGCCCTCGTGGGGAA
CTGTCCTACGAGATGAAGCGCAGTCCAAAAGGCTATTTAGACATCATTTA
CCTCGACGAGGAGATGAGGGTGACGCGCGGTCAGCAGGGCGCCCTGGTGG
TGGTCGATCGTGTTTGATTTTATTTAGTCGACGTGCTGCGGGTGCGGGCT
TGTGCTAAGTTTTTTTTTTCCATGTACTGTAGACAAGATCCACAATCCAC
AACCTTCACAACGGCGCTACTTTCCGTATTTTTGTTGCTCTTTATTTTTG
ACAAGTCTTCCACAGCTGAGCGATATTTGTTGTTGTATGCATACATATGT
CGTTTCATTGCGCGCTGAACAGAAGCGATGGAATCTATTCGTTTATCTCC
TTCCCAACAGTTCGCCGCCTGAATGTCTTGGGCCCCTTGTCGCTACCATT
TGTTCGCTTTCGGTTTGTTCCATTGTAACGTTTGTTCGTTTGCGCTGATT
GTTGTGCGGACAATTTTCTGTTCTCTCTTCATTGCCAGTGCATTCTGTGT
ATTTTCTTCGTATGTGTAGTGCCCTTTTGGGTTTGTTGGCATTTAGCGCG
GAAGGCGTCCGCGCCAGTTGGACGGGGGGCGGATGTTCGGCGGCAAGAGC
AGAGACCGTAATGTTTTTTTACCTTGGAGTTAACAAGAACAACCTATTGT
CGTCATCGTACCATTCTTATATTGCTCTTTTGAGCCTGCCGACGACGACG
CCAAATATTAGAGCGGGAAGTGAGTTGTGTGTTCATTCCTGAGAGACTTA
CAGGTCCTTCTTTACATTGCAAAACAGTTCCGTTCCCTCTACTCAGTACC
TTCTTCTGTCTTGTCAGTACTAGTCTCTACGAGGTCCTTACGAGTCGCAC
ATTGTACTCTTGATTCACATTGTACTCTTGATTCACGAGATGAGTGAGAT
GGATCGTGTGGAATCATTAGGAAGTCATCTTTGTTGTGGGTACGAAAGGT
CTGAGCCGTGGTGTGTCGTGCGTGATCCTCGCATCTCAGGGGGCACGAAA
GAAAGTGTATCATAGCCATGCCGTGATCGTCGGGGGGGGGGGGGTCAATA
TTTCCTGTCGTCACTCATACCTAGCATACCTCTCGGCCATTCGGCCATTC
CCACATCCCTCCTCTCTTGAGGTTGTTACACCCTAATTTTGCGCGCAGCA
CCATGTACGTCACAATGGATTTCTAACTCCTAAGTTCCTCTTGGCGCGTT
CGCGGCACATCAGCAGACTGGAATATTTGTTGTACAGTCTACTGCTGTAC
TCCCAACACTATTTAGCCTCCAGTTGCCCCCCCCCTATAGAAGCCGAAAT
CAAACCA
back to top

protein sequence of Ec-28_001980.1

>Ec-28_001980.1 ID=Ec-28_001980.1|Name=Ec-28_001980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=355bp
MRTNAGPHDKDGTVQYNARTQSRAWAPSTFPAADTPTAGPTDRRTPAPRS
VMGATGSLHVVVTTALLLLPGGDGFFSVVPRCATSSRAGVALYSSATSDD
VRSAEAAKSNLRSALAESGGSTLAEGVGAAVEVLANFNPTSSPAKAWPLH
SGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIG
DRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLV
RFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKV
VFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVV
VDRV*
back to top

mRNA from alignment at chr_28:1767587..1776517+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001980.1 ID=Ec-28_001980.1|Name=Ec-28_001980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8931bp|location=Sequence derived from alignment at chr_28:1767587..1776517+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CAAGCGTGAGTGGTCTTGTGTCTAGACTACCGACGCGTATGTATATGCGG
ACATGCGGACAAACGCTGGTCCCCACGACAAAGACGGGACTGTACAATAC
AACGCGCGCACCCAATCGCGCGCGTGGGCCCCTTCGACCTTTCCAGCAGC
TGACACGCCGACAGCGGGGCCAACAGATAGACGCACGCCCGCTCCACGTT
CGGTCATGGGTGCTACTGGTAGCCTCCACGTAGTCGTCACGACTGCTCTG
CTTCTCCTACCTGGCGGTGACGGTTTCTTCTCAGTCGTTCCGCGATGCGC
CACCAGCAGCCGGGCCGGTGTTGCACTGTATTCATCTGCCACGTCGGATG
ATGTCCGTTCTGCCGAGGCCGCCAAGAGTAACCTCAGGAGTGCGTTGGCG
GAGAGCGGAGGGTCTACTCTTGCCGAGGGTGTCGGGGCTGCGGTAGAGGT
GCGTATGGGGGGTGACTTCTGTGCTTACGCGTTCGTGTATCCGACGTGTC
TTTTTTGCCGTTCGGCAGTTTATTGGAATGAAAAACAACACACGCTCTTG
TTTGTTGTGCGTCCATGGATGCTACACTGTACATTACAGCGGTACTCCAT
GGCATGCATAGATGTTGTGTTGTTGGTGTTTTGTCTTCACATGAAAAACC
GTTCTGTTCTCTCTGCTCAGTACCTTCTTCTGTCCGTACTAGCCTAACCC
TTGACACGGTCGATTCCCGTGGTCACAGGCTAACTTACACCCAAAAATAA
GGTATACGAAAATAAAATGGACTCGAAGGGTCCAGGTCCGCAAGCCAATA
AAGGTCAACGACGGATAGTCTAGGCCACTCCGCTCGCCTCTCTGCACGCT
ATGCGAGGTAACCCTAGATTGGAAAAGATAGAAAAATCAACGTGCGGAAG
CAGGGAGTAAAATGTTGTACCTTATGCAATTTGTGCAATACGTACGTACG
TGTGTTGTATCGTAAGTGTATGTGTGGGTGTTTTTTTTTATTTTTCTTAA
TATGACACAACGAATCCATCTCGATCTGTAGAAAAGAGTCTGAGACAGAT
TAGCAATGTGGGTGTTTTTGCTTCTTCCATAAACGGTGTTATGTACAACA
ACACAAATTTAGCACACCCGACAAACCAACATACCAACATTTTCCTTCTA
CACCTTTCCAGCATAACATGCAGAGAGATACACAAGACGGCTACCAAACT
GTCTTGTTGAGCCTGTTACCCACAGGGGAGATGTCGCTGTGTGCTGCTCG
GGAAATCGTGGAAATACAGGTAGCCTTCCTCTGACGCTATGGATTCATTG
CTAGTCTATCTTAGACTCTTTCCTTAGATAAAGATGGATTCGTTGGGTCG
TATGAAGAAGCGCTCAGTATCTACCGCGGTGGATACTGGGGTACAGTAGA
TTCACCTATTATCTCACTCAATTTGATCGTACTCCGGAGTAGCTATCACC
CGAGGCTGGAAATGTTTCTGCACCAACAATGTTGAGGATGTTGGCGTGTG
GATGCTGACATGAGTCTGGGATGATTCTCGAACGAGGTGATGTTGCGGAG
AAATATATATGTCCCTGGAGCCAACAACACCAGATGTATTTTCATGATAA
GACTCCTGCTGCACATGAGAGCAGCGCACGCCTCGGTCGTGCAATCTTTT
ATGCGATAGTCTACCCGTACCAGGTACTTCGAAGTACAACATAGTCAGAG
GCTGATGGCAAGAACTCAAGTCTGCGTCCGAATCTGCGTAACCTGTGCAG
CGCAGCGGACGGATCACTGCTGTTGTACCGCTGGACGGCTGTGCTGGACG
GAGGGTAGGCCGAGTCTTTTGATTGCCACTAACGCATGTAACGCAACACA
TACAAGCATTCGTGAGTACTTGCACTGATGTACGACATAGAGCAGAATAC
AGCTGCAACAACTTCATGCACTTTTGTACCGTATTTGTGCGTGTTATGGC
ACCCATCGTTGATTTCGCACCCATCGGTGTTGTGGCACGGGGGTGCGCAA
AAATATCGAACACGTCTTTTGATTTAATTGCATTTCCGCACCGGTATCGG
TGTTAACGCACCCGGTGCGATATCAACGATAAAACCTGCTTGTAGGACGT
AAATTTGCGTGCTTGCGCAAGGTACCGGAACCCTCCGGGCCACGTCTCAA
ACTGTATGTAGCGAACCGCTGGGGCGCCATTCCCTTCATGTGTGTATATC
GCACCGTCGATCAGTAGAAATGATACATGTTTCCTTCTACGGTAATCCGT
ACATCGAATGCACTCACTCACTCAACTACTGTAAGCACACAGAACACATC
CCGCACCTCCAATCAACCGAACAAGAAGGAGTTCGTAAACGGTACTACTA
CAATTGTACCGGTCATGCCCCTTGAGGCAGACAAAGACAGATGGAGCACC
AGCCAACAAATGAGGGGCTTGCGATTTACAAAGAGGTTGTAAGAAAAACG
ATACCTTACTCTATACCTTTCCCAGCAGCGAACCACGGCGTCTGTTGTGT
TTGGCATATGCTACCCCATCAAACTCGCATCAGCCGCTTCTTTTAAGTAC
CGTAACACGCATAATTGCGGTACTCGTACCAGGAGACGCCTGTGTTCGTT
TCTTGAGTATTGTACCTATCGGTGTGTCGCACCGGGGTGCGTTTACTCAG
CACCGTAAAATGGCTACTGCAATTTCTTCCGTATCGCAGCCATCGGTGTC
ATCCCACCGGGGGTGCGTTGGAAATCCAGAACGAAATTATTTAATTGCAT
TTCCGCACGGGGATCGGTGTTATGCCACCCATTGGTGATATGGTACCGGG
GTGCGATGAAAAACCAAGATAGGAATGATTTAACAAACGATCGCACCCCG
GTGCCATAACACGCACAATTCCGGTACTTGCAATTTCGGCTTTGGAGCGC
ATGCGACGAATACGCGTTCGTCATATTCATGCACGCATGTGTGAGTCACC
TGCAATGTCGCGTACTTGCACGCGTCTGGGTTACTTGCAATGGTGGCCCG
GTGAAGGTGGGTTGCTGTGGATAGACTGGAATATCAGGCATCTTCGTCAA
ATGTTCCTTATTCTGTTAAGTGATAGCGGTACGCACTACTGTGATCTAAC
GAAATGCAATAGCGACAGACATCGATTGCTAACATCAGCTCATGCCGGCG
GTTACATGTCCCAACGTCGACAACGTCTTGCGCAGAAGAGGAGTGACTCG
AGTGCCCGGAACGCTTTTTTGCTACTATTAATACAACCGAGAGAAAGGCT
CCAGTACGTTTGGTGTTCGTCAACTCAGTTTGTTTCATGCATCTCAGTTT
CGGACGCCTCTTGTGTCTATCTCGTGTCCGGGCGGCATTGATTCAGCGCC
AGGATCTACATGTTGCGTGTTTTTCAGCAGTGACAGCGCAACAGCAAGAC
CGCGACAAACAACACAGCAGCGCACTGCCAATCCCTTCGTGATCTTCTCT
TACAGGACACTGACCGAAGTCTGTGGGCGTACGCTGCGTTTTATGTCTGT
GGCACTTTGTTGCCACAGGATGGGGCATTACCGCATCAATCGTCCCTGGA
ACAGAAAACATCCCTTTGTACGCAATGAGGCGCTGATCGATTCGACCAAA
ACCCCGAAAACAATGTTTTTTTACGTGACTTCCGCCATCTCTTCGTGTGG
CCATGGCCCGAAAAGCGTATTCTTGGCCACGGTGACGATGAACGGTGCTC
CATTTTTCCATCAGGTGCTGGCCAATTTCAACCCCACATCCTCCCCTGCT
AAGGCATGGCCACTGCACAGCGGAGAGTGGGCTTCCGTAGGTGAGAACAT
TTTCCAACATGGACTTACGTAGAGGTCGTGATATACGCTCGCTCGTACCA
TCAATAAGCATGGCGAATGGCCATAGGCCTGCGCACACCACAACGTCGGC
AACGAGGAAATCGGTTTTTCGTTGGCCAGGCGGAAACTGTATGGCGCTCG
AACCGCCGCGAGAGATGGTCGCCGTCGTGTCGCGTGCAGGGTACGCACAG
CACGTTGCTTAGACACCGCTGGCCAAGCCATCCCGGCACTTGCGTGCTTA
GACAACGCTGGTCAAGCTATCTCGGCACTGCTTGCGTCTATTAGCGTGTT
TGTGTTTTGGCTTGGACTGCCTTAACCTTGCGAGCATTGATCCCGCTGCC
GGCCATGGGAACAGATGGCGTCGTGACTACTATCCATCGAAGTACACACC
ACGCCATATGATTGTCCCTTCTCCCCGGAGAAGATGGTTTTCCATTCCTC
ACAAAATGTAGGATGCGTTCAACCACCATTTTCAGTTCGTGTCACCAGCG
ATGCTTTTATCTCTGGGTAGAAGCACCCCACAACCACCTCAGTTGCGTCC
GAGAGAGAATGGTTAGTGGAGGTTGCAGTATCGAAGGTTTGGCCTCGATG
CGTCAACTACGGAGTGAGATATGTGAACGGGTGCTGTCGTTCGCAAGTTG
GAAGTTGTGTGCTCTTGGTTGATGACGCACGCGGCCCAACCCAGAGCAAA
AATGTATTTTTTTCGCGGGCCGTGATCTTTCTTCTCCGTTGTCGGCGCCC
GTGGCGTCGACACGGTGCGAGGCCCTTGCGAATCTGCCCCGTGCAGATTT
CATAGCGTTATGGACGATAAGGTTGACTGACCTGTGGTAATCTCTCCGCA
CCCACAAGATAAATCTCGCCGCGCCAAGATATATCCAGCAAGGTCGATGG
GGCAAGATTTGTTCGAAAGGGCAACTTTTGGCCGCCGAACAAATCTTTGC
CAAGATTTTTTTCGAAGATTTGTGCCCCATAAATCGTGAAACTGAACTAT
CTTGGCCCAAGATCAAGATAATTCCCAAAGAAAGCGTCTCCATAAAGACC
GGTCTCACGCCCCGTCCGACGCGCCATGGGGCTGCGTTGATTGTTGCCCT
CTCGCGCCCCTCCCGTCGCGGCTGTGGGCACACGGCCATCTCGCCGTATT
CTCTGAATATTCCCCCCCCCGCGCCCCTTCCGTCGCGGCTATGGGCACAC
GGCCTTTCGGCCGTGGTTGTTGCCCTCCACGCCCCCTTCCGTCGCGGCTA
TGGGCACACGGCCTTTCGGTCGTTTTCTGTGACTCCACCCTCTCACGCTC
CCGCAATGGTGCCACCTTCACCACCTCCTGCTGCTGCTGCTGTGTGTAGA
TGGAGCGCGCGCGGTGCGCGCGCGGTGACCCGCGCGGCTTTAGTGTCTTT
TCCCCGCCTCTTCGTACAAGGCCTCACGTGCCGCCTCCAGCTCCTCGTCA
TCGCATTCCACCATGATCGCCAGGACAGCCTACGGGGTTCCGCACGATAC
TAACCGATGCCCCCGCTTGTTGCACTAACACTATCTACTGCCTCACCCCA
CCGTGTCTTTCTTCCCATGGCCCCACGAGTAGCTTCCCCTGGTTCTTTTG
ATGGCGCATCGACGGCGTCGTGGGGATGCATGCTGCCTCAGCTCTCCACA
CGCAAGCAAGCACTTTCCCGCGGTCAACAGGCGCACTTGGTGTGCCGTCT
GCGGCACCCCCTCCAGCGCCGCGCAGCTCTTCTCGACGTGATGAGCACGT
TGCTCTGACTCTTCGGCCAGCGCCTCCAGCGGCGGCTGCACCTCTACCAG
CGCTGCCTATCTTGTAGAGATATTCGGTGTTCTGAGATCTGCCAAACCCA
CCTTTAGAAGGGGCCTGAAACGCCCACACCGGTTCGCCTGCCGCAACCGG
CCTACTGCTGATGATCTCTTCTGCAGCCGCGAGTCTATGCAAGCGCCCAC
CGCAACAGGCTTCTCTTGGGATGATGACCCCCTGACGTCCCCGCTGCCCG
GTCCGGTCCCATGTCCGGGTCCACTCCAGCAGGGATCCTTGGCACTACCA
GGCTGGCTCCCGGTCTAGTGCTACTCCCCTCGTGCTGTGCGGGCGGCATG
ATTCCGTTGTTGTGCGGCCCCTCTCCCAGCAGACCGCGGGCAGACGTAGC
GCCCGTATCGACAGCGCCCACCGTGGCGCCGCCGGACTCCCCCTCCTTCT
CTCCCTTTCCTATGGCGGCTCGCAGCAGTTCCGTCAGCTCCTGCACTGCT
TACTTGTGGTGACGTCGGCAGCCTCTGCTGCAACATCGGCGCCACTCATC
TCCAGCACGGGTTCCCTCGAGGGATACACTCTAGAGTGTTAGTATACCCA
TGTATGTGTGTCGAAGATGCTTGCATCACTTGTATAAAGGACAGCAGACG
AGATCAAGACGCGGCGGGAGAGAGAGTGCCGCAAAGCAGCAAGCACTCCC
ACAGAGCCAAGCCCCGTGGACCAACCATAAAACCTAATCCAGGGGACTAT
CAACTCCTATCTGCGTAGCCACTTCCTGCAGTCCCGTTGGAATATCCTCA
TTCGCTCCTGCACACACGAACAATCCTTGCACTCCCGTCTGAGCGTCTAC
GCGTTGCCGTCGGAAAAGCAGCTGCCTGTTAGACGCCATTGTTGCCGAGA
CCATGAACTTCAACCCAAGAACCCACACGTTGCTGCTACCCGTGCACTCC
ATCCAGGGGAGGACTTCAAGGGCACGACTCGCACCAAAGACGGAGTGGAG
TGCACCCTAGGGCGGCTTGTGTTCAACATCTTTGAGCCCGTGAACCTCCC
CGTCCTGATAGTGGCCATCAAGAATACCATTGGGGACCGCCCCGAAAACG
CTGACCCGGCGTACGAATCCAATTACGTGATCTCGACTCGCTGGGTGGCC
CGCGACGGGAGCGGGCTCAGGGGACGCGTGGAGATCTCAGGGACCTGCTG
GGAAGACCCTTCCATGCCGGAACGCGTCTTGGTGCGGTTCACGAAGGGCT
CCATTGAACCAGACGAGGGGCAAGACCTCGACGCCTGGCGTAAGGTCATC
GGCGTGCGGGATGTCGAGGGCACCAAAGACAAAGGGCCGCTGTCCACCCT
GAAGGAGAAAGCCGCAAGGTTGATGCTCAAGGTAAAATCTCTTGTGGATA
CCAAGTTTGTTGTTCCTATTTCGAGGGTTTGCGTCTATTTTGGTCTCATG
CAGCAGCAACAGCCGTGTTCTGTTTGACCGCGACGCGTGGACGGACAATT
TTCGGTACACTGAGGAGCTGCAACTCAGGCGCGCTGAGGTTTCAACTCCG
GAAGAGGTAAAACTATCACAAGGTAGTCTGCCACACGAGGAGGAGCGTGG
CGTTCGGTTTACGGGAGTAGAACTTACTTGCCCCGGAGGTGTCGGTTTCC
AAGCGTACCGTGAGAGGCGGGGAGATGGCACCCCCCCAAGACCGACTTTC
AAAGCCAACACAACCAAGTGGGTGCGGAAAGAGGCCGAAAGTCTACGGAA
AGCCTCCACGAGATGTTTCCAAAACCTGTATTTTTGTTGTTGGCACAAGC
CTGGTTGTGAAGCAATCCAGCTTTGAAAATCGGTCTGGGGGGGGTGCCAT
CTCTCCGCCTCTTACGGTATTTACATAGCTATGGATATCGACCACAAGAC
GTGTGGTATTCAACTTTGGAACATCATGCGACGAAAGAACGAGGAGAACC
CGCACAGAAACTCCAGTGAAAGGGATTGAAACTTCATTACAATGTATAAT
GTGTTTGTTTTCGTCGCTCTCAGGTGGTGTTCGGTTTTCAGGGGCCCGCG
GACGGCCTGGGCCCTCGTGGGGAACTGTCCTACGAGATGAAGCGCAGTCC
AAAAGGCTATTTAGACATCATTTACCTCGACGAGGAGATGAGGGTGACGC
GCGGTCAGCAGGGCGCCCTGGTGGTGGTCGATCGTGTTTGATTTTATTTA
GTCGACGTGCTGCGGGTGCGGGCTTGTGCTAAGTTTTTTTTTTCCATGTA
CTGTAGACAAGATCCACAATCCACAACCTTCACAACGGCGCTACTTTCCG
TATTTTTGTTGCTCTTTATTTTTGACAAGTCTTCCACAGCTGAGCGATAT
TTGTTGTTGTATGCATACATATGTCGTTTCATTGCGCGCTGAACAGAAGC
GATGGAATCTATTCGTTTATCTCCTTCCCAACAGTTCGCCGCCTGAATGT
CTTGGGCCCCTTGTCGCTACCATTTGTTCGCTTTCGGTTTGTTCCATTGT
AACGTTTGTTCGTTTGCGCTGATTGTTGTGCGGACAATTTTCTGTTCTCT
CTTCATTGCCAGTGCATTCTGTGTATTTTCTTCGTATGTGTAGTGCCCTT
TTGGGTTTGTTGGCATTTAGCGCGGAAGGCGTCCGCGCCAGTTGGACGGG
GGGCGGATGTTCGGCGGCAAGAGCAGAGACCGTAATGTTTTTTTACCTTG
GAGTTAACAAGAACAACCTATTGTCGTCATCGTACCATTCTTATATTGCT
CTTTTGAGCCTGCCGACGACGACGCCAAATATTAGAGCGGGAAGTGAGTT
GTGTGTTCATTCCTGAGAGACTTACAGGTCCTTCTTTACATTGCAAAACA
GTTCCGTTCCCTCTACTCAGTACCTTCTTCTGTCTTGTCAGTACTAGTCT
CTACGAGGTCCTTACGAGTCGCACATTGTACTCTTGATTCACATTGTACT
CTTGATTCACGAGATGAGTGAGATGGATCGTGTGGAATCATTAGGAAGTC
ATCTTTGTTGTGGGTACGAAAGGTCTGAGCCGTGGTGTGTCGTGCGTGAT
CCTCGCATCTCAGGGGGCACGAAAGAAAGTGTATCATAGCCATGCCGTGA
TCGTCGGGGGGGGGGGGGTCAATATTTCCTGTCGTCACTCATACCTAGCA
TACCTCTCGGCCATTCGGCCATTCCCACATCCCTCCTCTCTTGAGGTTGT
TACACCCTAATTTTGCGCGCAGCACCATGTACGTCACAATGGATTTCTAA
CTCCTAAGTTCCTCTTGGCGCGTTCGCGGCACATCAGCAGACTGGAATAT
TTGTTGTACAGTCTACTGCTGTACTCCCAACACTATTTAGCCTCCAGTTG
CCCCCCCCCTATAGAAGCCGAAATCAAACCA
back to top

Coding sequence (CDS) from alignment at chr_28:1767587..1776517+

>Ec-28_001980.1 ID=Ec-28_001980.1|Name=Ec-28_001980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1065bp|location=Sequence derived from alignment at chr_28:1767587..1776517+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGACAAACGCTGGTCCCCACGACAAAGACGGGACTGTACAATACAA
CGCGCGCACCCAATCGCGCGCGTGGGCCCCTTCGACCTTTCCAGCAGCTG
ACACGCCGACAGCGGGGCCAACAGATAGACGCACGCCCGCTCCACGTTCG
GTCATGGGTGCTACTGGTAGCCTCCACGTAGTCGTCACGACTGCTCTGCT
TCTCCTACCTGGCGGTGACGGTTTCTTCTCAGTCGTTCCGCGATGCGCCA
CCAGCAGCCGGGCCGGTGTTGCACTGTATTCATCTGCCACGTCGGATGAT
GTCCGTTCTGCCGAGGCCGCCAAGAGTAACCTCAGGAGTGCGTTGGCGGA
GAGCGGAGGGTCTACTCTTGCCGAGGGTGTCGGGGCTGCGGTAGAGGTGC
TGGCCAATTTCAACCCCACATCCTCCCCTGCTAAGGCATGGCCACTGCAC
AGCGGAGAGTGGGCTTCCGTAGGGGAGGACTTCAAGGGCACGACTCGCAC
CAAAGACGGAGTGGAGTGCACCCTAGGGCGGCTTGTGTTCAACATCTTTG
AGCCCGTGAACCTCCCCGTCCTGATAGTGGCCATCAAGAATACCATTGGG
GACCGCCCCGAAAACGCTGACCCGGCGTACGAATCCAATTACGTGATCTC
GACTCGCTGGGTGGCCCGCGACGGGAGCGGGCTCAGGGGACGCGTGGAGA
TCTCAGGGACCTGCTGGGAAGACCCTTCCATGCCGGAACGCGTCTTGGTG
CGGTTCACGAAGGGCTCCATTGAACCAGACGAGGGGCAAGACCTCGACGC
CTGGCGTAAGGTCATCGGCGTGCGGGATGTCGAGGGCACCAAAGACAAAG
GGCCGCTGTCCACCCTGAAGGAGAAAGCCGCAAGGTTGATGCTCAAGGTG
GTGTTCGGTTTTCAGGGGCCCGCGGACGGCCTGGGCCCTCGTGGGGAACT
GTCCTACGAGATGAAGCGCAGTCCAAAAGGCTATTTAGACATCATTTACC
TCGACGAGGAGATGAGGGTGACGCGCGGTCAGCAGGGCGCCCTGGTGGTG
GTCGATCGTGTTTGA
back to top
Synonyms
The feature 'Ec-28_001980.1' has the following synonyms
Synonym
Esi0033_0059
Esi_0033_0059