Ec-28_001570.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001570.1
Unique NameEc-28_001570.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length331
Homology
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BLAST of Ec-28_001570.1 vs. uniprot
Match: A0A6H5KY37_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY37_9PHAE)

HSP 1 Score: 611 bits (1575), Expect = 1.640e-215
Identity = 303/330 (91.82%), Postives = 309/330 (93.64%), Query Frame = 3 
Query:   90 MSANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLAPPVDGGPANRGHPLPRGGVDGVGTGKPKVFLIVVVVIGLVVLYASMALRRWSTSTRHDLRPARRGRVSRGSDRAESRSATAFATGVRGSSGQELRQRRVTQALG 1079
            MSAN SSCSREHSRQARKIIAK VYPFLDKDPALAIP ACPLHPELDVFKDQELHKRLVPGK DTFQCGYC KQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHA GGSSLG GAGTIRRGCGACDPADMERRRRRCRALFHGCFDDS GSAGSDGG+VDAGPGRETG  GS GDYFVRQFC+HLACDDHHRPLAPPVDGGPAN  HPLP GGVDGVGTGKP+VFLI VVVIGLV+ YASMA+R  STSTRHDLRPAR GR SRGSDRAESRSATAFATGVRGSSGQE+RQRR TQALG
Sbjct:    1 MSANNSSCSREHSRQARKIIAKRVYPFLDKDPALAIPPACPLHPELDVFKDQELHKRLVPGKSDTFQCGYCHKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHARGGSSLGEGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSNGSAGSDGGVVDAGPGRETGDSGSIGDYFVRQFCNHLACDDHHRPLAPPVDGGPANHRHPLPHGGVDGVGTGKPRVFLIAVVVIGLVIFYASMAVRLRSTSTRHDLRPARTGRASRGSDRAESRSATAFATGVRGSSGQEIRQRRGTQALG 330
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: D7FXP7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP7_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 2.710e-149
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 3 
Query:   90 MSANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQ 722
            MSANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQ
Sbjct:    1 MSANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQ 211
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: A0A2C9UGA0_MANES (C2H2-type domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UGA0_MANES)

HSP 1 Score: 122 bits (307), Expect = 3.220e-27
Identity = 75/224 (33.48%), Postives = 109/224 (48.66%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLA 767
            A+E  CSRE SR A KII + + PF++K+    IP+ C LHP  D+++DQE HK  +   ++ ++CGYC+K+F  E Y+D+H+DN+H D LN++             GRCL D+C  L C D   DS + +                      C+PA   R R  C +L   CF             V+ GP           ++F+RQFCD   C  H +P +
Sbjct:   97 AHEVHCSRERSRAAWKIIEEYLMPFVEKE-QYQIPIRCRLHPANDLYRDQEEHK--LQEDINEWRCGYCKKEFYDEKYLDKHLDNRHFDLLNVS------------QGRCLADVCGALHC-DQVMDSATRKTK--------------------CNPAAAARNRHLCESLAQSCFP------------VNEGPSAHR-----LNEFFLRQFCDAHTCTGHQKPFS 267
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: A0A6A6MRH3_HEVBR (C2H2-type domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MRH3_HEVBR)

HSP 1 Score: 117 bits (293), Expect = 1.470e-26
Identity = 78/238 (32.77%), Postives = 113/238 (47.48%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLAPPVDGGPANR-GHP 806
            A+E  CSRE SR A KII K + PF++K+    I ++C LHPE D+++DQE HK  +   ++ ++CGYC+K F  E Y+D+H DN+H   LN++             GRCL D+C  L C D   DS + +                      C+PA   + +  C +L   CF             V+ GP           ++F+RQFCD   C    +P +    GG  N+ GHP
Sbjct:   12 AHEVHCSRERSRAAWKIIEKYLMPFVEKE-KYQISISCRLHPENDLYRDQEQHK--LHEDINEWRCGYCKKTFYDEKYLDKHFDNRHYHLLNVS------------QGRCLADVCGALHC-DQVMDSATRKTK--------------------CNPAAAAKNKHLCESLAQSCFP------------VNEGPSAH-----HLNEFFLRQFCDAHTCTGRQKPFS---KGGKGNKKGHP 193
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BLAST of Ec-28_001570.1 vs. uniprot
Match: UPI001BF58BD9 (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF58BD9)

HSP 1 Score: 115 bits (289), Expect = 2.110e-25
Identity = 74/224 (33.04%), Postives = 106/224 (47.32%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLA 767
            ++E  CSRE S+ A KII + + PF++K+    I   C LHP+ D+++DQE HK  +   L+ +QCGYC+K+F TE Y+DRH DN+H D LN++ S            RCL D+C  L C D   DS   +                      C+PA   R    C +L  GCF  + G + S                    ++F+RQFCD   C    +P +
Sbjct:   43 SHEVHCSRERSQAAWKIIEEYLMPFVEKE-RYQISRRCRLHPDNDLYRDQEQHK--IHVDLNEWQCGYCRKRFYTEKYLDRHFDNRHYDLLNMSHS------------RCLADVCGALHC-DLVMDSMPRKTK--------------------CNPAAAARNHHLCESLADGCFPVNQGPSAS-----------------HLHEFFLRQFCDAHTCTGGQKPFS 213
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: UPI000B78944F (uncharacterized protein LOC110656607 isoform X1 n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78944F)

HSP 1 Score: 114 bits (285), Expect = 1.070e-24
Identity = 72/224 (32.14%), Postives = 106/224 (47.32%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLA 767
            A+E  CSRE SR A KII K + PF++K+    I ++C LHPE D+++DQE HK  +   ++ ++CGYC+K F  E Y+D+H DN+H   LN++             GRCL D+C  L C D   DS + +                      C+PA   + +  C +L   CF             V+ GP           ++F+RQFCD   C    +P +
Sbjct:   50 AHEVHCSRERSRAAWKIIEKYLMPFVEKE-KYQISISCRLHPENDLYRDQEQHK--LHEDINEWRCGYCKKTFYDEKYLDKHFDNRHYHLLNVS------------QGRCLADVCGALHC-DQVMDSATRKTK--------------------CNPAAAAKNKHLCESLAQSCFP------------VNEGPSAH-----HLNEFFLRQFCDAHTCTGRQKPFS 220
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: A0A822YHB5_NELNU (C2H2-type domain-containing protein n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YHB5_NELNU)

HSP 1 Score: 114 bits (285), Expect = 1.140e-24
Identity = 73/219 (33.33%), Postives = 102/219 (46.58%), Query Frame = 3 
Query:  111 CSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLA 767
            CSRE SR A KI  + + PF++K+    I   C LHP+ D+F+DQELHK  +   ++ ++CGYC+K F+ E ++D+H DN+H+D LN             + G+CL DLC  L C D   DS   +                      C+PA  ER R  C +L   CF     SA S                    + F+RQFCD   C   H+P +
Sbjct:   58 CSRERSRAAWKITEEYLMPFVEKE-QYQISNKCRLHPDNDMFRDQELHK--IHMDVNEWRCGYCKKSFRAEKFLDQHFDNRHSDLLN-------------SHGKCLADLCGALHC-DLVMDSKLRKTK--------------------CNPAAAERNRHLCESLADNCFPIGVRSAAS-----------------RLHELFLRQFCDAHTCTGRHKPFS 222
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: UPI001E88E963 (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E88E963)

HSP 1 Score: 112 bits (281), Expect = 7.230e-24
Identity = 71/224 (31.70%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPLA 767
            A++  CSRE SR A KII + + PF++++   +I   C LHP+ D+F+DQE HK  +   ++ +QCGYC+K F+ E ++D+HMDN+H + LN+ GS            +CL DLC  L C D+   + S +                      C+PA + R R  C +L   CF    G + S                    + F+RQFCD  +C    +P +
Sbjct:   54 AHQVHCSRERSRAAWKIIEEYLMPFVERE-HYSISSKCRLHPDNDLFRDQEEHK--IHFDINEWQCGYCKKSFRAEKFLDQHMDNRHHNLLNVNGS------------KCLADLCGALHC-DHVMKTKSTKAK--------------------CNPAAVARNRHLCESLADSCFPIHQGPSAS-----------------RLHELFLRQFCDAHSCSRKQKPFS 224
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: A0A067LND0_JATCU (C2H2-type domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LND0_JATCU)

HSP 1 Score: 111 bits (277), Expect = 8.330e-24
Identity = 73/223 (32.74%), Postives = 100/223 (44.84%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCDHLACDDHHRPL 764
            A+E  CSRE SR A KII +   PF++K+    I   C LHPE D+F+DQE HK  +   L  ++CGYC+K F  E Y+D+H DN+H D LN++             GRCL D+C  L C D   DS + +                      C+PA   + +  C +L   CF                 P  E        + F+RQFCD   C+   +P 
Sbjct:   33 AHEVHCSRERSRAAWKIIEEYFMPFVEKE-RYHISTRCRLHPENDLFRDQEEHK--IHQDLHDWRCGYCKKVFYDETYLDKHFDNRHYDILNVSH------------GRCLADVCGALHC-DLVMDSATRKTK--------------------CNPAAAAKNKHLCESLADSCF-----------------PANEGPSAHRLNELFLRQFCDAHTCNGRRKPF 202
[Close]
BLAST of Ec-28_001570.1 vs. uniprot
Match: A0A6A6MSJ6_HEVBR (C2H2-type domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MSJ6_HEVBR)

HSP 1 Score: 109 bits (272), Expect = 9.400e-24
Identity = 70/212 (33.02%), Postives = 102/212 (48.11%), Query Frame = 3 
Query:   96 ANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFKDQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDAIGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQFCD 731
            A+E  CSRE SR A KII K + PF++K+    I ++C LHPE D+++DQE HK  +   ++ ++CGYC+K F  E Y+D+H DN+H   LN++             GRCL D+C  L C D   DS + +                      C+PA   + +  C +L   CF             V+ GP           ++F+RQFCD
Sbjct:   28 AHEVHCSRERSRAAWKIIEKYLMPFVEKE-KYQISISCRLHPENDLYRDQEQHK--LHEDINEWRCGYCKKTFYDEKYLDKHFDNRHYHLLNVS------------QGRCLADVCGALHC-DQVMDSATRKTK--------------------CNPAAAAKNKHLCESLAQSCFP------------VNEGPSAH-----HLNEFFLRQFCD 186
The following BLAST results are available for this feature:
BLAST of Ec-28_001570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY37_9PHAE1.640e-21591.82C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FXP7_ECTSI2.710e-149100.00C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A2C9UGA0_MANES3.220e-2733.48C2H2-type domain-containing protein n=2 Tax=Maniho... [more]
A0A6A6MRH3_HEVBR1.470e-2632.77C2H2-type domain-containing protein n=1 Tax=Hevea ... [more]
UPI001BF58BD92.110e-2533.04Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
UPI000B78944F1.070e-2432.14uncharacterized protein LOC110656607 isoform X1 n=... [more]
A0A822YHB5_NELNU1.140e-2433.33C2H2-type domain-containing protein n=2 Tax=Nelumb... [more]
UPI001E88E9637.230e-2431.70Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
A0A067LND0_JATCU8.330e-2432.74C2H2-type domain-containing protein n=1 Tax=Jatrop... [more]
A0A6A6MSJ6_HEVBR9.400e-2433.02C2H2-type domain-containing protein n=1 Tax=Hevea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1435081..1440381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score124.8
Seed ortholog evalue7.6e-26
Seed eggNOG ortholog3983.cassava4.1_014625m
Length1831
Hectar predicted targeting categoryother localisation
Gene idEc-28_001570.1
EggNOG free text desc.Zinc finger protein
EggNOG OGs28JBI@1,2QRQG@2759,37KQU@33090,3GA52@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001570Ec-28_001570Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1435081..1440381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001570.1Ec-28_001570.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1435829..1440291 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001570.1.6Ec-28_001570.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1435081..1436188 -
Ec-28_001570.1.5Ec-28_001570.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1436783..1436894 -
Ec-28_001570.1.4Ec-28_001570.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1437325..1437626 -
Ec-28_001570.1.3Ec-28_001570.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1438425..1438487 -
Ec-28_001570.1.2Ec-28_001570.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1439303..1439392 -
Ec-28_001570.1.1Ec-28_001570.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1440226..1440381 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0015703UTR:Ec-28_001570.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1435081..1435828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001570.1CDS:Ec-28_001570.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1435829..1436188 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0015705UTR:Ec-28_001570.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1440292..1440381 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001570.1 ID=Ec-28_001570.1|Name=Ec-28_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=331bp
MSANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFK
DQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDA
IGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIR
RGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGG
FGSTGDYFVRQFCDHLACDDHHRPLAPPVDGGPANRGHPLPRGGVDGVGT
GKPKVFLIVVVVIGLVVLYASMALRRWSTSTRHDLRPARRGRVSRGSDRA
ESRSATAFATGVRGSSGQELRQRRVTQALG*
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spliced messenger RNA

>Ec-28_001570.1 ID=Ec-28_001570.1|Name=Ec-28_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr_28:1435081..1440381- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CAGACGCGGGCCACAGACGCACACCACCGCCGCAGTAGCGGTGGCCAGGA
CACACGGCGTGGTGCACACTTACGACGACATCGGGGCGCAATGTCGGCCA
ATGAAAGCAGTTGCTCTAGGGAGCATTCGCGCCAGGCACGGAAGATCATT
GCTAAGAGCGTCTACCCGTTCCTGGATAAAGACCCGGCGCTGGCTATCCC
TCTAGCATGCCCGCTCCACCCAGAGCTCGACGTATTCAAGGACCAGGAGT
TGCACAAGAGATTGGTGCCAGGAAAATTGGATACTTTTCAGTGTGGCTAC
TGCCAGAAGCAATTCAAGACGGAGTTCTACATGGACAGGCACATGGACAA
CAAACACGCGGACCGGCTGAACCTCGCCGGAAGCGACGCTATCGGCCACG
GCATTGAACCGGCACCCGGGCGCTGCCTCGGCGACCTGTGCCCGGAGCTG
GGGTGCGGTGACTATGCCGCGGACTCCTGTAGCGTGGAGATCCACGCCGG
TGGCGGATCGTCGTTGGGCACGGGCGCGGGGACGATCAGGAGGGGGTGCG
GGGCCTGTGACCCCGCGGACATGGAGCGGAGGAGACGCCGGTGCAGGGCG
CTGTTCCACGGTTGCTTCGACGACTCAACTGGCAGCGCCGGTTCTGACGG
AGGCATTGTTGATGCGGGACCTGGACGAGAAACCGGGGGTTTCGGAAGCA
CCGGCGATTATTTTGTGCGACAGTTCTGCGACCACCTCGCGTGCGACGAC
CACCACCGTCCCCTCGCTCCTCCCGTCGACGGGGGGCCCGCGAACCGCGG
GCACCCCCTCCCCCGCGGGGGTGTCGACGGCGTTGGGACGGGAAAGCCAA
AAGTTTTTCTGATCGTGGTTGTCGTGATCGGGCTGGTCGTCTTGTACGCC
AGCATGGCGCTCAGGCGATGGTCGACGTCAACGCGGCACGATCTACGCCC
GGCGAGAAGAGGCCGAGTCAGCAGGGGCAGTGATCGGGCGGAGAGCCGTA
GCGCTACTGCTTTTGCGACTGGCGTTCGAGGCTCTTCCGGGCAGGAGCTG
CGGCAGCGGCGCGTCACGCAAGCCCTGGGTTGATCTTATCGCGTCTTTTT
TTCCCACCGTTGAGAATAAGGTGTCTACGGACTATTTTCACACATCCACG
ATTGTGAAGAAGATGACGATCGCGAGGATGCATCTCTCTGTTTCGAAAAA
GCTCGAAGATGTTGAGGTTTTTTGGGGGGGAAGGTGGTGGCCTCCCGTCG
ATAGTCTAAGGTACGTTCGGCGGCTGAGGGGATGTGCGGGACTATTTCGT
TGCACTTGTACGTACGGCAGTGCGCGTAGTATTGCGAGTTAAAACGCCGC
GAAGAACGACGCGCGCCTTGAATGTCCAAAACTGTGGGTGGTGTGGTGGA
CTTCTGTTATGATCCCGCATCCGGCTTCAAGTTGGCATTTCTTCGAGTGG
CGATATGTGTTTGAGGCACACCCCGCCCGATGCTGATCGACGGATATCTC
GGGGGATCAAGTGCAGGATCTACTGCTGTAGTTTGTGAAGGCTTCAAGGT
ATTTGCATATATGAATATTTTGTTGCTGGACGATGCGCCGGAGGGGGCGG
CTCAATTTCAGCGTCGTGGGTGAATCACGTAAACATCCACTGTAACAAGT
AATCAGAGTTGACATCGCAACGAGAAGCTTGGTTGGCGTCATCCGCAACG
AATCTCGCAAGCCACAGCTTTGATATTTAGTGACTTGGAAAAAAAAACAT
AAACGGTAGACTAAATGCTCAGCCGTCTTGTGTCGTGGATAACTACTGCG
CTGTAGACCTACTGCTGCTGTAGACTACTGC
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protein sequence of Ec-28_001570.1

>Ec-28_001570.1 ID=Ec-28_001570.1|Name=Ec-28_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=331bp
MSANESSCSREHSRQARKIIAKSVYPFLDKDPALAIPLACPLHPELDVFK
DQELHKRLVPGKLDTFQCGYCQKQFKTEFYMDRHMDNKHADRLNLAGSDA
IGHGIEPAPGRCLGDLCPELGCGDYAADSCSVEIHAGGGSSLGTGAGTIR
RGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGG
FGSTGDYFVRQFCDHLACDDHHRPLAPPVDGGPANRGHPLPRGGVDGVGT
GKPKVFLIVVVVIGLVVLYASMALRRWSTSTRHDLRPARRGRVSRGSDRA
ESRSATAFATGVRGSSGQELRQRRVTQALG*
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mRNA from alignment at chr_28:1435081..1440381-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001570.1 ID=Ec-28_001570.1|Name=Ec-28_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5301bp|location=Sequence derived from alignment at chr_28:1435081..1440381- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CAGACGCGGGCCACAGACGCACACCACCGCCGCAGTAGCGGTGGCCAGGA
CACACGGCGTGGTGCACACTTACGACGACATCGGGGCGCAATGTCGGCCA
ATGAAAGCAGTTGCTCTAGGGAGCATTCGCGCCAGGCACGGAAGATCATT
GCTAAGGTCAGCAACGAAAGCTACTTTCACGACGAGAACAATCCGCCGCG
TCACTTGCTATATTAGTGCCGCAACACGCCGCTTGTATCCCACTCGCAGA
CACCTGATGTGTGATGAACTTCAGCGCGCGTCTACAGCAAGCCGCTGCAT
GTTGTCGAGAAAGACAGAGAAAAAGCCGCAGCACTGCCGTAGGCAATTGG
CCGGCAGGTCACTGCACCTTTGTGCGGCACAACTACTGAAGATCTTGAAA
ATTGAGTCACGCCGCACCTGGGTTGATGATGCCCAGCAGGTCTCCGCTCC
CAGCATGTTACACACTCCATCTTTTCATGTCAGTAAGGTTGGCCGGGAGC
CACATCAGTGACCTTAATTGAAATACACAACATCTGTGTGGCAAGGGTTG
GTCTCATAAGATGTAAACGTTATTCTAAACATGTTACTCTGTTTTTGTTG
ACTGCTGTGAGGGGCAACACGAGCTTGTACCGCCGTGACTGCTGTAGGTA
ATTACAGCGGGACACCCAGTGCAGCAGTATTGTCCGTGCAAGTAGCAGTG
TTGACAATACCGATGCACAGAACATCGCATGCTTTCCGAACTTGTACAAA
AGAAACGCAGGAAGGCCAATACCAAGCGAAACGTAGCCGTATGTGACAGG
ACAGGAGGCCTTTTCTCTTTGGCAAACAAGAATCCAAGCGAGCCTATTGA
CTACAGGTTGAGTCACATTGGCCTCCGTCCTTGTCTCTGAAGCAGAATAT
GTTAAATTTGGAGTGCCTTCACTGACGGTGCTCGCACCCCTTCACATTTT
CTTGCGTCCCCATCTTGTTTTGTCCATCTCGCGGACAAGAGCGTCTACCC
GTTCCTGGATAAAGACCCGGCGCTGGCTATCCCTCTAGCATGCCCGCTCC
ACCCAGAGCTCGACGTATTCAAGGACCAGGTATGGCGATTTGCACAGTTG
TCTTTGAGTTTAAAGTTTAAACTCAGATAAACAGCAGTGGCCAGTTTGAA
TATGGGCCGCTAAAGCCTAGCCTAGATATTGACAAAGGAAGTACATCGGG
TACCTTTGCGAGAACTCGTCGCATGTTGTTCTTTTTTGGGCGGGGCGTAG
CCTTCCAGCGGCTGACAGGATTTAAGTGAGCATGGGGTGCGAATAGTCGC
ATGGTTCGCCGAACGCTGGACTTTTTTTCCTGATCAGAGTATTTCCCACT
GGCACTCATGATTTCAGTGTTCCCGCCACATGTTGTTGTCGTTGTCATCG
TCGCTACATCGAAAACGTTCTGCCTCTGTCTGTGCACCTCCTCTTCCGTA
CTCTTCAAGGCCAGGACAACGCATGAATAATTTTGTTGAACACCATGGTG
ATCAAACATACCAGTATGTCGCCCAAAAAATCCAATGGCGAAGGGGCGCG
AAAAAGGAAAGTGTTTTTGATTTCAACGTGTATCCTTGGATCAGTTTTTG
ATTTTAGAGCATGTCGCTACAACAGGTGTCGCCTGCTACTTGTACAAGCG
CCATTTGCCATCATCAGGCGTACCTCGTGCTGCCATGAGCGGCTTCACGA
TTACTCGCTTAGCGGCTCTGTACGTTGGAGGAGAAAGGCGTGGACAAACG
TCGGGAGCTGGCGTTGACCTCAGCACATCACGACGCCTGCAGAGCACCCT
CAGTGGCGCCGACTGCACAGCGACTACCCAGTCCAACTGTCAAAGTAAAC
GTCGTCGTCCTTGCCTTTGCTCGACCACTGGATGCCTCGTGCAGGAGTTG
CACAAGAGATTGGTGCCAGGAAAATTGGATACTTTTCAGTGTGGCTACTG
CCAGAAGGTACGCAAACGTATGGGGGCACCGCAGAAGGGGCCGCAGTAGT
TTGTTGACTCCTCCTAGCCACTGGGATAAAGAGACTACCATGCTCCTCCT
GTTGAACAGGGAGCACCAGCCATGTTCGCTACTGCAGCCTCTGCAATGCT
TTCCAAGCTGCTTGTCTGGGGGGATAGTGCTTTGTGTAGGTTTGTGTGTC
AAGCGGTGTTTTTTGTTCATAGTGAGATCGTGAAGAACGATAGAGCGTGA
GAGAGACACAGGGAGATAAGATACGGGAGAGGACGGAGAAGAATCGGGAG
TTCGGCTGGGCACGGATGCTCTGGGGCCCGTTTGCAGCTGCTGGCTAGAG
CTGAGTAGTGCAGCACACCCGGGCAACACCGCAACAGAAATGTACCACGT
TGTGGTCTCACTGGAGAAGTTGGCGGCGCGGTTATGACAGCACGTTCGTG
GCTGCTGTGGCCCACCGTTGCATAGGGGGGGGGGCTCGGCCTCTGGGGTA
TGGGCTCGTCTGTTCTTTCAGGCTGACCTGCGTTGGCACTAAGAATCACG
CTTCTAGTACACCACGCGCAAAGAAGCATTTTTAATTGTTTCTGTCGGAT
TGCAAGGCGGATGGAGCATCTGGAAGCATTTCTCTTTGTCGGTATGCATG
TGTATTTCGTTCTTGCTCAACCTCCGAGCCGCAAAAGATATCCCCAGACT
CGAGAGTAGTAGATCGCAACCGTTCTCCCTTGCAAGGGCACCCGCGCTCA
CCCGTACCGCTCCTGGCTAATGTGCTTACCCTCCTCCCTCGACGGGCCCT
GGCAGCAATTCAAGACGGAGTTCTACATGGACAGGCACATGGACAACAAA
CACGCGGACCGGCTGAACCTCGCCGGAAGCGACGCTATCGGCCACGGCAT
TGAACCGGCACCCGGGCGCTGCCTCGGCGACCTGTGCCCGGAGCTGGGGT
GCGGTGACTATGCCGCGGACTCCTGTAGCGTGGAGATCCACGCCGGTGGC
GGATCGTCGTTGGGCACGGGCGCGGGGACGATCAGGAGGGGGTGCGGGGC
CTGTGACCCCGCGGACATGGAGCGGAGGAGACGCCGGTGCAGGGCGCTGT
TCCACGGGTACGCAGTGGCGTGGACATGTATGCTTGTTCGTTCTGTTTGT
GGCTCGTCTCTCTGCCTCTTTGCCGCTCCGCTTCTCTTCCCGCCTCTGTC
TGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTGTGTTCTCTGTTATTGTAGCACACGGCGCCCCAAA
GTGTGCTCTTTCGCCGCGTGGCTGTCTGCCCTCGACGTCTCCACATTGAT
TGGTCTAGCGACCGGGTATTCCGGTTTGTGGTGTCTGCCGAACTGTGTGT
TTCGACGTGCTTCCAATTTTTGCTTTGGTTCCTCCTTCTGTTTTCCTGCT
TTTGGCTACAGTTGCCTGTTGCCGCCGTTGGTTCCGCTACCCCCCGCCGC
CACGCCACTTTTTTGTTGGTTTTGCTGGACGATGCAGTTGCTTCGACGAC
TCAACTGGCAGCGCCGGTTCTGACGGAGGCATTGTTGATGCGGGACCTGG
ACGAGAAACCGGGGGTTTCGGAAGCACCGGCGATTATTTTGTGCGACAGG
TGAGGAAGAGCATGCGAGCAGTACGATAAAAAAGCCGGAGACGCTGTGCT
TGTTCTTGTCGTGTTGTTTCTTATCTCGCTTTTCTGTCATAACAGTTCTG
AATCCTCTGGCGATTCGCCTCGTAACCTTCTCTTTGTTCTCCAACGCTGA
CAACTCACAGGATCCTTGGTCTTCCTCTGTGTCTTTGTCTGTCGAGCTGG
GGTCTCGAGATCGGGTCTTGGGCTAGATGGGAGCTCAGATTAGATACGTT
TGTATTGCACAACGGCGAGTTTCTCTTTCCCAGAAGCATGTTTCTTCTGA
AGTTGATGCCATGTTTCGTTAGCGCTTCTATATAGACGGATCTGACAAGA
CTCCCATGAGTGAGAGGCCTATTCTCTTTGTGACAACCAGCACCAAACAG
CAGAACCAATCAAATGAATTTCGGCGGCTTCTGCCCGGAACACCCTGGGC
ATTCAGGATGTGCTCGAGCGTGTAGACGGCGGCGTTTCGCCAGGCACTTT
GTTTTCGTTCCCCATTTTGACTAGCAGGATTTCCTTTAACCAACGCACAG
CCGACAGATACCCTCGCGTTTCGCCCTCCCGTCGCCTCTCCAGTTCTGCG
ACCACCTCGCGTGCGACGACCACCACCGTCCCCTCGCTCCTCCCGTCGAC
GGGGGGCCCGCGAACCGCGGGCACCCCCTCCCCCGCGGGGGTGTCGACGG
CGTTGGGACGGGAAAGCCAAAAGTTTTTCTGATCGTGGTTGTCGTGATCG
GGCTGGTCGTCTTGTACGCCAGCATGGCGCTCAGGCGATGGTCGACGTCA
ACGCGGCACGATCTACGCCCGGCGAGAAGAGGCCGAGTCAGCAGGGGCAG
TGATCGGGCGGAGAGCCGTAGCGCTACTGCTTTTGCGACTGGCGTTCGAG
GCTCTTCCGGGCAGGAGCTGCGGCAGCGGCGCGTCACGCAAGCCCTGGGT
TGATCTTATCGCGTCTTTTTTTCCCACCGTTGAGAATAAGGTGTCTACGG
ACTATTTTCACACATCCACGATTGTGAAGAAGATGACGATCGCGAGGATG
CATCTCTCTGTTTCGAAAAAGCTCGAAGATGTTGAGGTTTTTTGGGGGGG
AAGGTGGTGGCCTCCCGTCGATAGTCTAAGGTACGTTCGGCGGCTGAGGG
GATGTGCGGGACTATTTCGTTGCACTTGTACGTACGGCAGTGCGCGTAGT
ATTGCGAGTTAAAACGCCGCGAAGAACGACGCGCGCCTTGAATGTCCAAA
ACTGTGGGTGGTGTGGTGGACTTCTGTTATGATCCCGCATCCGGCTTCAA
GTTGGCATTTCTTCGAGTGGCGATATGTGTTTGAGGCACACCCCGCCCGA
TGCTGATCGACGGATATCTCGGGGGATCAAGTGCAGGATCTACTGCTGTA
GTTTGTGAAGGCTTCAAGGTATTTGCATATATGAATATTTTGTTGCTGGA
CGATGCGCCGGAGGGGGCGGCTCAATTTCAGCGTCGTGGGTGAATCACGT
AAACATCCACTGTAACAAGTAATCAGAGTTGACATCGCAACGAGAAGCTT
GGTTGGCGTCATCCGCAACGAATCTCGCAAGCCACAGCTTTGATATTTAG
TGACTTGGAAAAAAAAACATAAACGGTAGACTAAATGCTCAGCCGTCTTG
TGTCGTGGATAACTACTGCGCTGTAGACCTACTGCTGCTGTAGACTACTG
C
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Coding sequence (CDS) from alignment at chr_28:1435081..1440381-

>Ec-28_001570.1 ID=Ec-28_001570.1|Name=Ec-28_001570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=993bp|location=Sequence derived from alignment at chr_28:1435081..1440381- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGCCAATGAAAGCAGTTGCTCTAGGGAGCATTCGCGCCAGGCACG
GAAGATCATTGCTAAGAGCGTCTACCCGTTCCTGGATAAAGACCCGGCGC
TGGCTATCCCTCTAGCATGCCCGCTCCACCCAGAGCTCGACGTATTCAAG
GACCAGGAGTTGCACAAGAGATTGGTGCCAGGAAAATTGGATACTTTTCA
GTGTGGCTACTGCCAGAAGCAATTCAAGACGGAGTTCTACATGGACAGGC
ACATGGACAACAAACACGCGGACCGGCTGAACCTCGCCGGAAGCGACGCT
ATCGGCCACGGCATTGAACCGGCACCCGGGCGCTGCCTCGGCGACCTGTG
CCCGGAGCTGGGGTGCGGTGACTATGCCGCGGACTCCTGTAGCGTGGAGA
TCCACGCCGGTGGCGGATCGTCGTTGGGCACGGGCGCGGGGACGATCAGG
AGGGGGTGCGGGGCCTGTGACCCCGCGGACATGGAGCGGAGGAGACGCCG
GTGCAGGGCGCTGTTCCACGGTTGCTTCGACGACTCAACTGGCAGCGCCG
GTTCTGACGGAGGCATTGTTGATGCGGGACCTGGACGAGAAACCGGGGGT
TTCGGAAGCACCGGCGATTATTTTGTGCGACAGTTCTGCGACCACCTCGC
GTGCGACGACCACCACCGTCCCCTCGCTCCTCCCGTCGACGGGGGGCCCG
CGAACCGCGGGCACCCCCTCCCCCGCGGGGGTGTCGACGGCGTTGGGACG
GGAAAGCCAAAAGTTTTTCTGATCGTGGTTGTCGTGATCGGGCTGGTCGT
CTTGTACGCCAGCATGGCGCTCAGGCGATGGTCGACGTCAACGCGGCACG
ATCTACGCCCGGCGAGAAGAGGCCGAGTCAGCAGGGGCAGTGATCGGGCG
GAGAGCCGTAGCGCTACTGCTTTTGCGACTGGCGTTCGAGGCTCTTCCGG
GCAGGAGCTGCGGCAGCGGCGCGTCACGCAAGCCCTGGGTTGA
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Synonyms
The feature 'Ec-28_001570.1' has the following synonyms
Synonym
Esi0033_0002
Esi_0033_0002