Ec-28_001100.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001100.3
Unique NameEc-28_001100.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length150
Homology
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A6H5KIG7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.060e-26
Identity = 84/169 (49.70%), Postives = 93/169 (55.03%), Query Frame = 2 
Query:  164 VPRTAAAFGKAAIAPRRHSVDSAESPALQATSSS----VTPLEQTSSWXXXXXXXXXXXXXXXXXXXXRAITPSGTAPSRGRPASGGKGGKGGDSRRRHGGANAGGRKGEHRSRDGRVWGPRDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLGKWRC 658
            V  TAAAFGKAAIAPRRHSVDSAESPALQA SSS    V  L  + S+                       TP      + R     +     D++     A A    G+H           DIAAYIKK FDE+HGAKWHCIVGKHFGSFVTA+SNGFVHLHLGK  C
Sbjct:    3 VRHTAAAFGKAAIAPRRHSVDSAESPALQAPSSSNKQLVRHLNNSRSFGSLGSFNTAGESDYSVRNSAFTRTPGLRRKRQARQTRSHRSTLAADAKEST--ARAMEESGDHE----------DIAAYIKKAFDEQHGAKWHCIVGKHFGSFVTAQSNGFVHLHLGKVGC 159
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: D8LGT6_ECTSI (Dynein light chain 1, cytoplasmic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-14
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:  283 DKQLVRHLSNSRSFGSLGSFNTAGEGDYSVRNSAFTRTPGLRRKR 417
            +KQLVRHLSNSRSFGSLGSFNTAGEGDYSVRNSAFTRTPGLRRKR
Sbjct:  256 NKQLVRHLSNSRSFGSLGSFNTAGEGDYSVRNSAFTRTPGLRRKR 300
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A4S2LSV1_OPIFE (Dynein light chain n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2LSV1_OPIFE)

HSP 1 Score: 71.6 bits (174), Expect = 1.940e-11
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLGK 649
            +DIAAYIKK+FD  HG  WHC+VG+ FGS+VT E+N F++ H+G+
Sbjct:   36 KDIAAYIKKEFDRTHGPTWHCVVGRQFGSYVTHEANHFIYFHIGE 80
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A183AG92_9TREM (Dynein light chain n=4 Tax=Echinostomatoidea TaxID=404429 RepID=A0A183AG92_9TREM)

HSP 1 Score: 70.5 bits (171), Expect = 5.090e-11
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLGKW 652
            +DIAAYIKK+FD ++G  WHC+VG+ FGS+VT ES  F++ H+G++
Sbjct:   37 KDIAAYIKKEFDRKYGPNWHCVVGRQFGSYVTHESKHFIYFHIGQY 82
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A7M3QNY5_SPIER (Dynein light chain n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QNY5_SPIER)

HSP 1 Score: 70.1 bits (170), Expect = 7.350e-11
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHL 643
            +D+AA++KK+FD RHG  WHCIVGKHFGS+VT E + F++L++
Sbjct:   37 KDMAAFVKKEFDRRHGETWHCIVGKHFGSYVTHEKDAFIYLYV 79
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A4E0RJ64_FASHE (Dynein light chain n=2 Tax=Fasciola TaxID=6191 RepID=A0A4E0RJ64_FASHE)

HSP 1 Score: 69.7 bits (169), Expect = 9.230e-11
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHL 643
            +DIAA++KKDFD ++G+ WHCIVGKHFGS+VT E+  F++ +L
Sbjct:   36 KDIAAFVKKDFDRKYGSTWHCIVGKHFGSYVTHETQNFIYFYL 78
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A7E6EHH8_OCTVU (Dynein light chain n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6EHH8_OCTVU)

HSP 1 Score: 69.7 bits (169), Expect = 9.230e-11
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLGK 649
            +DIAAYIKK+FD++H A WHC+VG++FGS+VT ES  FV+ + G+
Sbjct:   36 KDIAAYIKKEFDKKHSATWHCVVGRNFGSYVTHESKNFVYFYCGQ 80
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A0R3SD17_HYMDI (Dynein light chain n=2 Tax=Hymenolepididae TaxID=6214 RepID=A0A0R3SD17_HYMDI)

HSP 1 Score: 69.3 bits (168), Expect = 1.330e-10
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLGK 649
            +DIAAYIKK+FD+RHG  WHCIVG++FGS+VT E+  F++ + G+
Sbjct:   38 KDIAAYIKKEFDKRHGPTWHCIVGRNFGSYVTHETKHFIYFYAGQ 82
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A6A6NQ44_9PEZI (Dynein light chain n=2 Tax=Dothideomycetes TaxID=147541 RepID=A0A6A6NQ44_9PEZI)

HSP 1 Score: 69.3 bits (168), Expect = 1.450e-10
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLG 646
            +DIA YIKK+FD R GA WHCIVG++FGSFVT ES  F++ +LG
Sbjct:   41 KDIAQYIKKEFDSRKGATWHCIVGRNFGSFVTHESKHFIYFYLG 84
[Close]
BLAST of Ec-28_001100.3 vs. uniprot
Match: A0A1D1YTY7_9ARAE (Dynein light chain (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YTY7_9ARAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-10
Identity = 26/45 (57.78%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:  515 RDIAAYIKKDFDERHGAKWHCIVGKHFGSFVTAESNGFVHLHLGK 649
            +DIAAYIK++FD++HG+ WHCIVG++FGS+VT E+  F++ +LG+
Sbjct:   53 KDIAAYIKREFDKKHGSTWHCIVGRNFGSYVTHETKHFIYFYLGQ 97
The following BLAST results are available for this feature:
BLAST of Ec-28_001100.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIG7_9PHAE2.060e-2649.70Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LGT6_ECTSI1.240e-1497.78Dynein light chain 1, cytoplasmic n=1 Tax=Ectocarp... [more]
A0A4S2LSV1_OPIFE1.940e-1160.00Dynein light chain n=1 Tax=Opisthorchis felineus T... [more]
A0A183AG92_9TREM5.090e-1156.52Dynein light chain n=4 Tax=Echinostomatoidea TaxID... [more]
A0A7M3QNY5_SPIER7.350e-1160.47Dynein light chain n=1 Tax=Spirometra erinaceieuro... [more]
A0A4E0RJ64_FASHE9.230e-1160.47Dynein light chain n=2 Tax=Fasciola TaxID=6191 Rep... [more]
A0A7E6EHH8_OCTVU9.230e-1160.00Dynein light chain n=1 Tax=Octopus vulgaris TaxID=... [more]
A0A0R3SD17_HYMDI1.330e-1060.00Dynein light chain n=2 Tax=Hymenolepididae TaxID=6... [more]
A0A6A6NQ44_9PEZI1.450e-1065.91Dynein light chain n=2 Tax=Dothideomycetes TaxID=1... [more]
A0A1D1YTY7_9ARAE1.480e-1057.78Dynein light chain (Fragment) n=1 Tax=Anthurium am... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1061209..1067941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length3974
Hectar predicted targeting categoryother localisation
Gene idEc-28_001100.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001100Ec-28_001100Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1058267..1067941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001100.3Ec-28_001100.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1065979..1066428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001100.3.1Ec-28_001100.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1061209..1061357 +
Ec-28_001100.3.2Ec-28_001100.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1061978..1062113 +
Ec-28_001100.3.3Ec-28_001100.3.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1062853..1062986 +
Ec-28_001100.3.4Ec-28_001100.3.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1063341..1063443 +
Ec-28_001100.3.5Ec-28_001100.3.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1064074..1064205 +
Ec-28_001100.3.6Ec-28_001100.3.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1064622..1067941 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0011005UTR:Ec-28_001100.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1061209..1061357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001100.3CDS:Ec-28_001100.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1065979..1066428 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0011003UTR:Ec-28_001100.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1066429..1067941 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001100.3 ID=Ec-28_001100.3|Name=Ec-28_001100.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=150bp
MAYRLLCAVCVCVFLPCFLLWRRLHEMTGWPLERHRQPYRWFLQSSGLPR
KGGRGGDGVGMRLVCLRFACKALYVCQRRFFVLLTPSATTMCALSRWAEK
PEGLKYLPAGLGVRIRARRLVFRAPFSVELRNARLSRGYKKGWSPSRVR*
back to top

spliced messenger RNA

>Ec-28_001100.3 ID=Ec-28_001100.3|Name=Ec-28_001100.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3974bp|location=Sequence derived from alignment at chr_28:1061209..1067941+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCTTGTCGTAGGTGGGGGGGGGCACAACTGACGTGCTTTGCGGAGCGTTC
GTCGCAAGGCTCGTGGAAATGTTCGATTGGTTGGCATGGCCGCGGTAATG
AGTGCCTCGTCCCCTTCGACGCCTTTTTGAGCAGTTTCCAACGAATGAGA
CGAAGCAGCTCAGCGGTTCCGCGCACGGCTGCGGCGTTCGGGAAGGCTGC
CATCGCACCGCGTCGTCACTCAGTCGATTCCGCCGAAAGTCCAGCATTGC
AGGCAACGTCGTCGTCGGTGACCCCTCTGGAGCAGAACAAGCAGCTGGTC
CGACACCTCAGCAACAGCAGGAGCTTCGGCAGCCTCGGCAGCTTCAACAC
CGCGGGCGAGGGCGATTACTCCGTCAGGAACAGCGCCTTCACGAGGACGC
CCGGCCTCAGGCGGAAAAGGGTGGAAAGGGTGGTGATTCTCGCCGCCGAC
ATGGCGGAGCAAATGCAGGAGGACGCAAAGGAGAGCACCGCTCGCGCGAT
GGAAGAGTCTGGGGACCACGAGGACATCGCCGCGTACATCAAGAAGGACT
TCGATGAGCGGCACGGTGCGAAGTGGCACTGCATCGTCGGGAAACACTTC
GGGTCCTTCGTTACCGCGGAGTCGAACGGCTTCGTGCACCTGCATCTCGG
CAAGGTGGCGGTGCTGCTGTTCAGAGCCGACGGATGAGAGGATGCCTTTC
CTTTTTTTCGAAGGATCACGCAAGCAATCTGAGGCAAGCTTGAGGTTTTA
GATTCTGGCCCTCTTGTCTGCGCTGGGAAGGAACATCTTTCTCTCTCTCT
CCTGTTCGTTGGTGGCGTTTGTCGCCCCGGGATGATTGGCTCGGTGGTGT
GGAGACGTGCGTTTTTTTGTTTTTGTCCAAATGTGTTGTTTGCGGAAAAT
ATTTCCTTGGAATACCGGCTGGTCGATGTTGACTGCATTTTCCGCCGCAC
CATTTTTTGCTATTTAGTTTCTTTACCGGGCGCGTTTCGTGCTACACTCT
TTACCACGTATATGACCATGGTAGTAGTCCCCAATCATTGTCGGAGACCC
GGTTGCGCGGCGAAGTCTGTTGATGCTCGTTGGGCCAGCCGTGAGCGACG
TTTCGTTACTCGGGCTGATCTCGTTTAGAGCACAATCGGTGTTGGTATCC
GACCCGAGGGTGAATGGGTCCGCGGCTAAATCCTCTCTTAATTTTTGTTT
TTTCTACATCTTTATATAGAGTTTTTGTGTTGCCACTCGCTGCTGGTTAG
CTCCGCGTCTAATCCTCGCTGAACTTTTTGTTTTTTCTACATCTTTATAT
AGATTTTTTGTGTTTCCACCCGCTGCTGGTTTGCTCCGCCTCTGATCCTC
CCTGAAATTTTTGTTTCTTCGTCTAGATGTAGCCTTGTGTTGCCGTCTGC
TGCTGGTGGTCCTTGTTGTGTGCGAGGGAGCAAGCAGGGCGCTTGCGGCA
CCGCTGCTGCTGTTTGTTCTCCCCTACAGTTGTAGGTGCTCTCGTTCGAT
GTTGCTGGCTGCCCTTGGTGTCTAGGATCACGGCGTGAACAGCACGAGGG
GTCGTCAGGTGACTGTCTCGTTCTGAAGGAGGAGGGGGGGCGTTGTCAGT
CATGTTTTGCATGCCTTCAGTTGTTAGGCTATTGGGGGGTGCCTGCCGTT
CGGCCGCGGCGTGCTTAGACGGGGTGTTGTGCTGGTGCGCGCGTTTGTAT
GGAACACTCGTTCGCTTGTTCCGAGGAAAGGGGGCACGTAGGGGAGACAC
ATGTGTTTTTCACTTCGCGGATGACACATGCTACTGCTGGAGGCGTAGGC
TGGGGGGCCCGCGCGACGTCGACGATATTCGGGCTCGACGTTGAGCGCGT
CTATAGCTGCCTCTGCCGTCGTTTGGCGGGAGAAAATAATACCTAACCTC
GGAGCACAGATGCTCTACAAGAAACAAACCGCGCGCGCGCGTGTGTGACT
TGTCTTTCGGGAAACGAACGCGATTTTGTTTTTTTTGTGCCGGGGTGCGT
GCGGGGGGGGGATGGCGTATCGGCTGTTGTGTGCTGTATGTGTGTGTGTT
TTTTTGCCGTGCTTCTTGCTTTGGCGTAGACTGCACGAAATGACGGGATG
GCCACTCGAACGACATCGTCAGCCTTATAGATGGTTTCTTCAGTCATCCG
GCCTCCCCCGGAAGGGGGGACGCGGAGGAGATGGGGTGGGTATGCGTCTT
GTGTGTCTGCGCTTTGCTTGCAAGGCGCTTTATGTGTGCCAGCGTCGTTT
CTTTGTTCTCCTCACACCTAGTGCTACAACGATGTGCGCCCTCAGTAGGT
GGGCGGAAAAACCCGAAGGCCTCAAGTACCTCCCGGCCGGGTTGGGGGTT
CGAATCCGGGCGAGGCGTCTTGTATTCCGCGCTCCGTTCTCGGTAGAGTT
ACGGAACGCGCGCTTGTCCCGTGGGTACAAGAAGGGCTGGTCTCCCTCGC
GCGTGCGTTAAGCAACCGCAGATGAAACGCCGTGTGCGTCGCCCCGGACT
GAAGGTGCCCTGTTCGACAGGGAGTTGAGACCTGAGGGTTGCGGAGCGGG
ATATTGCGAAGACATCGGACAAGGTTGATTCAACGTGTATTGGCTGGTTG
GGCGCGCAGCATAATGGCGCGGTGAGCGCAGAGGGGACGAGACTTGTCGT
CCACCAGTTGTTGTTGACTCATGCGCTCACTCGACCAGGCTACAACCAGG
ATGTCTAACGTCTACTCGTGTTGTCCATTGCGTTATTGTTGTGCAACGAG
AACGGACGCCCTGCGGTAGCCGGACTCCGCGGAGTATTTTTTGGAGCCGC
GGATTGTTGTGGAGATGGAAAGAGAGGGGGGGGAACGTATCGTCCGCGGG
GACCCTAGGGACCAGACGTAGATTGGGTTTTGTTGGCATCTTCGCATACT
TTCGTGTAGAGCCGCCTTTTTTCGTTCTGTCTTTCATTGTTGCTTTGCGG
CTGGGCACTTTTTATGCGTTTTGGCATATTGTAGCCCTGGTGGCGTTGCA
TACGTGCTCGGGTGGCGAGTAGCGGTGAAGTCAGGGAGGGTAAAATACAG
CTGCTGGTGTTTTTTTTTTGGAAAATGAAACCCAGGTCCCTTGCAAGAGA
CGATAGCGAGAGCAAGCTACGTGAACGGAGGGTAAATATAGCGGGGACTG
CTTGGAAAACCCAGGCTTTCATGTGCGCACTGCAGGTAACAAGAGACGTG
GGGGTTAGGGAGAAAACGTCGTAAATTAACAAAAAGTGTCGAGTGTATTT
TTATGAAAGATGTAACTTGAGCCCTTATTTTTTTTGTGGTGTTGAACCAT
GTGCGGTGGAAAGCTTCGTTAGAAGTTTCATCAACGTGGGTGCAACTTGT
ATTCTGTTTTGGCGCCAGCGTTTTTGGTGTGCTCTTCGCGTACATTGCGT
TGCGAACACGGGACCTGGCATCCCGTGCAATCGAAGGCGAGACAAGATGG
GCAGGACAGCCTGTTCGGAGACCCTTAGCCGATTTCTGGCCCCCTCAAAA
GTCTTGCTGATACACGTGTATGTGTGTCGGGCGGGAACGCTGCCCTTTTC
AACGTAAGTCCCGGAAGGCGTGGTTTCTATCGCATGTGTCGATCGAAACA
GTAGTAGGGAGGGAATGCTGCGTTTGAAACGCGCAAACAAAAGGCGCTGC
GCTTGTGCATGTGCTCTTTCTTCCTGGTGTTGTCTTGTATGTTGCCTTCG
CGTTTTTGTGGAAGGTGTACTGACTGGTAATTTTGCGCGTCATGGAAACC
TTTTTTTGCAATGACTTCAATACGGTTTTTCGCTTCATCGTACTCTCCGA
GCAAAATGCTCTTTGCGTGGCAGCCTTTTTTTCTCTCGACACACGAGAAG
AGATGTGCGCAGGAGGTTGTGCGCAGGAGGAGCAACAAATGCCGCCTTTT
TCAAGCACGAGCCTGAACCAGAAGATACGCTGTATAGCATGTAAAGAGCA
TCGGCGGACGATCTCACGAGAGGG
back to top

protein sequence of Ec-28_001100.3

>Ec-28_001100.3 ID=Ec-28_001100.3|Name=Ec-28_001100.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=150bp
MAYRLLCAVCVCVFLPCFLLWRRLHEMTGWPLERHRQPYRWFLQSSGLPR
KGGRGGDGVGMRLVCLRFACKALYVCQRRFFVLLTPSATTMCALSRWAEK
PEGLKYLPAGLGVRIRARRLVFRAPFSVELRNARLSRGYKKGWSPSRVR*
back to top

mRNA from alignment at chr_28:1061209..1067941+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001100.3 ID=Ec-28_001100.3|Name=Ec-28_001100.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6733bp|location=Sequence derived from alignment at chr_28:1061209..1067941+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCTTGTCGTAGGTGGGGGGGGGCACAACTGACGTGCTTTGCGGAGCGTTC
GTCGCAAGGCTCGTGGAAATGTTCGATTGGTTGGCATGGCCGCGGTAATG
AGTGCCTCGTCCCCTTCGACGCCTTTTTGAGCAGTTTCCAACGAATGAGG
TGGGACAGGGCACCGATCGAGATAGCGGGAGGCTGCGCCGAGAGTATGCG
TTGCCTTTCTTGAACCGCACGTCTTCAATAACGAGCGGCTGTGTTGAACC
ACCACAAAAGCTTGCTTCTTGTCCGAACAGAAGTGCATGTTCGTCGAGGA
GCGTGTTCCGTAAGAGGCGGAGAGATGGCACCCCCCCCCCCCTAGGTCGA
CTTTCGAAGCTCATTTGCTCCGGAACCAAGGGGCGCGCGGAAAGAGAAGA
GACCGATACGTCGACGGAAAAGGCCTCGATGAAATTGTCCCAACACCACC
ATTTGGGTGTTGACACGAGCTTGGTTGTGAAGCTATCGAGATGTGAATGC
CGGTCTAGTGGGGGTACCACCCATCTCTCCGCCTCTCGCGGAAGTCTAGC
TTTCACCTACGAAATCTCCCCCCCAGTGTCAAGGGAATCGGGCAACACAG
ATAGAGTAAGTTCATGATGGCGAATCCTGTGCATCGGTTCCGAGCTTCTT
CGCATCTGACATCGACATGTGTATAAACACATCTTGCGCACAAGTAAAGA
GCGATATCTAACCAAGTAAAGAGCGATATCTAACCAATTGCTCGATGATT
TCGACGACGCCAATGACAGACGAAGCAGCTCAGCGGTTCCGCGCACGGCT
GCGGCGTTCGGGAAGGCTGCCATCGCACCGCGTCGTCACTCAGTCGATTC
CGCCGAAAGTCCAGCATTGCAGGCAACGTCGTCGTCGGTGACCCCTCTGG
AGCAGGCAAGTGGAAAGGGGGGGGGGAGTGGCTCGGTGGCTGCTTCGTAT
GGGAGTAGTGAGGGGAGGAGGGCGTTCGTTGGTCGGCGGTTCTCATGTTC
TCATTGTGTGTCCGGTTTTCACAGTTATGTCGTGATTTCGCCCGCGACGT
GTGTATTGAGTCTTGGGGTGTTGGCGTGGGTAGCCCTCAGGGGGCGCGTG
CGACTTAGTTCTACGGAGCGGGGCCTTTGGCGGCCTGAACCTTTCAAGAA
GAAGAGAGAGGGGCATAGATGGAGAGAGAGAGACGGAGAGAAAGAAAGGG
AGAGAGAGAGAGGCGGGATGAAGTTGTCCTGCTGTCCCTCAACCTAACCC
GTCAGCCGAACAACATCTATGCTCGTTAATTTTCCTCATTTACCCGAATG
GGCGGTCTTTGAACCGCAAACATGTCTGCTTGGCGTCTTCACGGACTCAT
TGTCATTAGCAGCGACAAACGGCCTCGAAGATGTTGGAAGTGGCCTTTCA
TCTCTCGGGTGCCTTTTTGGTTTTTTTGGGTGGTTGGATTTTGTTTGTTT
TGTTGCCTTCGTTTTTGCACGATGGCCAGAACAAGCAGCTGGTCCGGCAC
CTCAGCAACGGCAACAACGTCGAAAAAGCGTTCATTGTTGCCAGCCTTAT
TCATACGACTCGCAAGCCGCTCTGTTTTCTTGAGATTTTGTTCCTTTGGC
TTGTTTCTTTTATAACCCCCGTTGTTGTTTTGCACGACGGACAGAACAAG
CAGCTGGTCCGACACCTCAGCAACAGCAGGAGCTTCGGCAGCCTCGGCAG
CTTCAACACCGCGGGCGAGGGCGATTACTCCGTCAGGAACAGCGCCTTCA
CGAGGACGCCCGGCCTCAGGCGGAAAAGGCAAGCAATGCAAACACGCTGC
CACTAAAACACACGGACCACCGTTGGGAAAGATGTGTGTAGCCGTGGCCA
TGGGCGGGCGTTTGTTGACCTGCGGCACGCGGTGTTTGAAGCAGTGGTGA
GGAGGGAATATGGTCGCAAATTGCAGGGCATACAGCTAACTCCCGAGTGG
GAGCCTTGTAATAAAGAATGTTTTGTTTTCTTGTCACCCTGAGCGAGAAA
ACCGTGGCTGTGAGTCAAGTACGTTTTATCCTTTTTCTTCCATGAAATGA
CACCTTGAATATCCCCGCTTCCCTTGCCACGCCTTCCTCCGTCTTCGCGA
CCCGTTCGTCTGCTAAAACAAAAAAAAAATAGGGTGGAAAGGGTGGTGAT
TCTCGCCGCCGACATGGCGGAGCAAATGCAGGAGGACGCAAAGGAGAGCA
CCGCTCGCGCGATGGAAGAGTCTGGGGACCACGAGGTATCTACTTTTTCA
TGTAGGAGTGCGACAGCTTTGGCAGGTCTGTCGCTGCCGATGTCATAGTA
TTCAGTCAGTGCTGCTGTGGTTACGGTTTCATTCCGAAAAGGGGGGTGGT
TGTCATTACCGGGCCCGCGGTTTTAATTCATTCCGAAACCTACAATTTTC
ATTCCGAGACTTTAATACATAGCGTATTTTCATTCCAAAACCGACGGTTT
CATTCTTTCCGAAACTGTTTTTTTTCATTCCGAAGGGGGAAGTTTTCATT
CAGAAACCGACCGCTTCCTTCCGAAGCAATGCGTTTTTTTTCAAACTGGA
GTTCTTTGTCCAGAATAATTGGCCACGTTGGCGCCACACGGACGACGGTG
GACGGGAATTGATGGTGTGCTTCAGGAGTGCGCAGCAGTATATTTTGGCC
AGCGTTTGCTCCTCTCATGCAGCAAAGCGCCGCGCACCCGATGTCATTCG
ATACGATCGTTTTTATTCGGCCCGATTTTCTTGAGGCCATCCACCCCACT
CACTCTCCCATCCCCCCGCCGTCCCAGATTTGTCTTTTGTCTGTTGACCC
CACCTTCGACCAACCGCCCTTGCATGGTGTGACAAACTTTCTTCGTGTTT
TTTTTTTGCTGACAGGACATCGCCGCGTACATCAAGAAGGACTTCGATGA
GCGGCACGGTGCGAAGTGGCACTGCATCGTCGGGAAACACTTCGGGTCCT
TCGTTACCGCGGAGTCGAACGGCTTCGTGCACCTGCATCTCGGCAAGGTG
AGGGTGCTAGAGGGGGGCAGGGAGGAAAGAGGCGCTACGACGTCAGGCCC
ACATACATCGCAGTGAAAGGGAACGTGCTTTTTGCATGCGAAGCGAGACA
GGGGTGTCCTCGTTTTACCGTACATGCCGTAGTCGTGAGACCATTGACGT
CTAACCTACTTTTTGTAAGCGAAGCCAGACAGGGGTGTCCTCGTTTTACC
GTGCACGCCGTGATCGTTAGACCATTGGGCCCGCATCCCTATGAACCTGG
GACGGAAGCAGACAGGAGGGAGATGGCTCTACTTGAATCAGTTGTCTCGT
CACACACACACCAGTTGCGCGAACCCGACCCTGGCTCGCCTAACCCTTTT
CCGCCATTTCAATTTTGTGTTTTTTATGTGTGTGTGCGTGTTTTTGTTTT
CGGCATCGTCCAGGTGGCGGTGCTGCTGTTCAGAGCCGACGGATGAGAGG
ATGCCTTTCCTTTTTTTCGAAGGATCACGCAAGCAATCTGAGGCAAGCTT
GAGGTTTTAGATTCTGGCCCTCTTGTCTGCGCTGGGAAGGAACATCTTTC
TCTCTCTCTCCTGTTCGTTGGTGGCGTTTGTCGCCCCGGGATGATTGGCT
CGGTGGTGTGGAGACGTGCGTTTTTTTGTTTTTGTCCAAATGTGTTGTTT
GCGGAAAATATTTCCTTGGAATACCGGCTGGTCGATGTTGACTGCATTTT
CCGCCGCACCATTTTTTGCTATTTAGTTTCTTTACCGGGCGCGTTTCGTG
CTACACTCTTTACCACGTATATGACCATGGTAGTAGTCCCCAATCATTGT
CGGAGACCCGGTTGCGCGGCGAAGTCTGTTGATGCTCGTTGGGCCAGCCG
TGAGCGACGTTTCGTTACTCGGGCTGATCTCGTTTAGAGCACAATCGGTG
TTGGTATCCGACCCGAGGGTGAATGGGTCCGCGGCTAAATCCTCTCTTAA
TTTTTGTTTTTTCTACATCTTTATATAGAGTTTTTGTGTTGCCACTCGCT
GCTGGTTAGCTCCGCGTCTAATCCTCGCTGAACTTTTTGTTTTTTCTACA
TCTTTATATAGATTTTTTGTGTTTCCACCCGCTGCTGGTTTGCTCCGCCT
CTGATCCTCCCTGAAATTTTTGTTTCTTCGTCTAGATGTAGCCTTGTGTT
GCCGTCTGCTGCTGGTGGTCCTTGTTGTGTGCGAGGGAGCAAGCAGGGCG
CTTGCGGCACCGCTGCTGCTGTTTGTTCTCCCCTACAGTTGTAGGTGCTC
TCGTTCGATGTTGCTGGCTGCCCTTGGTGTCTAGGATCACGGCGTGAACA
GCACGAGGGGTCGTCAGGTGACTGTCTCGTTCTGAAGGAGGAGGGGGGGC
GTTGTCAGTCATGTTTTGCATGCCTTCAGTTGTTAGGCTATTGGGGGGTG
CCTGCCGTTCGGCCGCGGCGTGCTTAGACGGGGTGTTGTGCTGGTGCGCG
CGTTTGTATGGAACACTCGTTCGCTTGTTCCGAGGAAAGGGGGCACGTAG
GGGAGACACATGTGTTTTTCACTTCGCGGATGACACATGCTACTGCTGGA
GGCGTAGGCTGGGGGGCCCGCGCGACGTCGACGATATTCGGGCTCGACGT
TGAGCGCGTCTATAGCTGCCTCTGCCGTCGTTTGGCGGGAGAAAATAATA
CCTAACCTCGGAGCACAGATGCTCTACAAGAAACAAACCGCGCGCGCGCG
TGTGTGACTTGTCTTTCGGGAAACGAACGCGATTTTGTTTTTTTTGTGCC
GGGGTGCGTGCGGGGGGGGGATGGCGTATCGGCTGTTGTGTGCTGTATGT
GTGTGTGTTTTTTTGCCGTGCTTCTTGCTTTGGCGTAGACTGCACGAAAT
GACGGGATGGCCACTCGAACGACATCGTCAGCCTTATAGATGGTTTCTTC
AGTCATCCGGCCTCCCCCGGAAGGGGGGACGCGGAGGAGATGGGGTGGGT
ATGCGTCTTGTGTGTCTGCGCTTTGCTTGCAAGGCGCTTTATGTGTGCCA
GCGTCGTTTCTTTGTTCTCCTCACACCTAGTGCTACAACGATGTGCGCCC
TCAGTAGGTGGGCGGAAAAACCCGAAGGCCTCAAGTACCTCCCGGCCGGG
TTGGGGGTTCGAATCCGGGCGAGGCGTCTTGTATTCCGCGCTCCGTTCTC
GGTAGAGTTACGGAACGCGCGCTTGTCCCGTGGGTACAAGAAGGGCTGGT
CTCCCTCGCGCGTGCGTTAAGCAACCGCAGATGAAACGCCGTGTGCGTCG
CCCCGGACTGAAGGTGCCCTGTTCGACAGGGAGTTGAGACCTGAGGGTTG
CGGAGCGGGATATTGCGAAGACATCGGACAAGGTTGATTCAACGTGTATT
GGCTGGTTGGGCGCGCAGCATAATGGCGCGGTGAGCGCAGAGGGGACGAG
ACTTGTCGTCCACCAGTTGTTGTTGACTCATGCGCTCACTCGACCAGGCT
ACAACCAGGATGTCTAACGTCTACTCGTGTTGTCCATTGCGTTATTGTTG
TGCAACGAGAACGGACGCCCTGCGGTAGCCGGACTCCGCGGAGTATTTTT
TGGAGCCGCGGATTGTTGTGGAGATGGAAAGAGAGGGGGGGGAACGTATC
GTCCGCGGGGACCCTAGGGACCAGACGTAGATTGGGTTTTGTTGGCATCT
TCGCATACTTTCGTGTAGAGCCGCCTTTTTTCGTTCTGTCTTTCATTGTT
GCTTTGCGGCTGGGCACTTTTTATGCGTTTTGGCATATTGTAGCCCTGGT
GGCGTTGCATACGTGCTCGGGTGGCGAGTAGCGGTGAAGTCAGGGAGGGT
AAAATACAGCTGCTGGTGTTTTTTTTTTGGAAAATGAAACCCAGGTCCCT
TGCAAGAGACGATAGCGAGAGCAAGCTACGTGAACGGAGGGTAAATATAG
CGGGGACTGCTTGGAAAACCCAGGCTTTCATGTGCGCACTGCAGGTAACA
AGAGACGTGGGGGTTAGGGAGAAAACGTCGTAAATTAACAAAAAGTGTCG
AGTGTATTTTTATGAAAGATGTAACTTGAGCCCTTATTTTTTTTGTGGTG
TTGAACCATGTGCGGTGGAAAGCTTCGTTAGAAGTTTCATCAACGTGGGT
GCAACTTGTATTCTGTTTTGGCGCCAGCGTTTTTGGTGTGCTCTTCGCGT
ACATTGCGTTGCGAACACGGGACCTGGCATCCCGTGCAATCGAAGGCGAG
ACAAGATGGGCAGGACAGCCTGTTCGGAGACCCTTAGCCGATTTCTGGCC
CCCTCAAAAGTCTTGCTGATACACGTGTATGTGTGTCGGGCGGGAACGCT
GCCCTTTTCAACGTAAGTCCCGGAAGGCGTGGTTTCTATCGCATGTGTCG
ATCGAAACAGTAGTAGGGAGGGAATGCTGCGTTTGAAACGCGCAAACAAA
AGGCGCTGCGCTTGTGCATGTGCTCTTTCTTCCTGGTGTTGTCTTGTATG
TTGCCTTCGCGTTTTTGTGGAAGGTGTACTGACTGGTAATTTTGCGCGTC
ATGGAAACCTTTTTTTGCAATGACTTCAATACGGTTTTTCGCTTCATCGT
ACTCTCCGAGCAAAATGCTCTTTGCGTGGCAGCCTTTTTTTCTCTCGACA
CACGAGAAGAGATGTGCGCAGGAGGTTGTGCGCAGGAGGAGCAACAAATG
CCGCCTTTTTCAAGCACGAGCCTGAACCAGAAGATACGCTGTATAGCATG
TAAAGAGCATCGGCGGACGATCTCACGAGAGGG
back to top

Coding sequence (CDS) from alignment at chr_28:1061209..1067941+

>Ec-28_001100.3 ID=Ec-28_001100.3|Name=Ec-28_001100.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=450bp|location=Sequence derived from alignment at chr_28:1061209..1067941+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTATCGGCTGTTGTGTGCTGTATGTGTGTGTGTTTTTTTGCCGTG
CTTCTTGCTTTGGCGTAGACTGCACGAAATGACGGGATGGCCACTCGAAC
GACATCGTCAGCCTTATAGATGGTTTCTTCAGTCATCCGGCCTCCCCCGG
AAGGGGGGACGCGGAGGAGATGGGGTGGGTATGCGTCTTGTGTGTCTGCG
CTTTGCTTGCAAGGCGCTTTATGTGTGCCAGCGTCGTTTCTTTGTTCTCC
TCACACCTAGTGCTACAACGATGTGCGCCCTCAGTAGGTGGGCGGAAAAA
CCCGAAGGCCTCAAGTACCTCCCGGCCGGGTTGGGGGTTCGAATCCGGGC
GAGGCGTCTTGTATTCCGCGCTCCGTTCTCGGTAGAGTTACGGAACGCGC
GCTTGTCCCGTGGGTACAAGAAGGGCTGGTCTCCCTCGCGCGTGCGTTAA
back to top
Synonyms
The feature 'Ec-28_001100.3' has the following synonyms
Synonym
Esi0181_0002
Esi_0181_0002