Ec-27_006850.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006850.1
Unique NameEc-27_006850.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length133
Homology
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BLAST of Ec-27_006850.1 vs. uniprot
Match: D7FSY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY4_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 3.990e-95
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEALVGHPSMHCSHDRRRPVVATLTAVCSRIPQGKSVATRTSC 396
            MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEALVGHPSMHCSHDRRRPVVATLTAVCSRIPQGKSVATRTSC
Sbjct:    1 MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEALVGHPSMHCSHDRRRPVVATLTAVCSRIPQGKSVATRTSC 132
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BLAST of Ec-27_006850.1 vs. uniprot
Match: D7FSY2_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY2_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.190e-53
Identity = 87/93 (93.55%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            MDFRVATYNILCSHLAEPT FPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGI WAGDLHVYFM RGYAFVTAHYG HFNNY G AL
Sbjct:   53 MDFRVATYNILCSHLAEPTRFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIGWAGDLHVYFMDRGYAFVTAHYGKHFNNYMGVAL 145
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BLAST of Ec-27_006850.1 vs. uniprot
Match: A0A7R9UGV8_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UGV8_DIALT)

HSP 1 Score: 112 bits (279), Expect = 5.040e-29
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   10 RVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            RVATYN+L SHLA+P+ FP+C+P +LDA  RL RV  KL AE ++ SVI LQEV + WAG+LH +F A GY FVTA YG +FN Y G  L
Sbjct:   29 RVATYNVLSSHLADPSHFPRCAPADLDAAVRLPRVLAKLRAETAQKSVIALQEVSMDWAGELHTFFAAEGYQFVTALYGRYFNGYMGVGL 118
[Close]
BLAST of Ec-27_006850.1 vs. uniprot
Match: A0A8J5XKH1_DIALT (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKH1_DIALT)

HSP 1 Score: 112 bits (279), Expect = 1.100e-26
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   10 RVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            RVATYN+L SHLA+P+ FP+C+P +LDA  RL RV  KL AE ++ SVI LQEV + WAG+LH +F A GY FVTA YG +FN Y G  L
Sbjct:    7 RVATYNVLSSHLADPSHFPRCAPADLDAAVRLPRVLAKLRAETAQKSVIALQEVSMDWAGELHTFFAAEGYQFVTALYGRYFNGYMGVGL 96
[Close]
BLAST of Ec-27_006850.1 vs. uniprot
Match: A4S1B2_OSTLU (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S1B2_OSTLU)

HSP 1 Score: 108 bits (269), Expect = 1.600e-25
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    4 DFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            D RV TYN+L SHLAEPT+F  C   +L A TRL+RV  KL+ E+ + +V+ LQEV + WAG LH YF  RGYAF+ + YG  FNNY G  L
Sbjct:   15 DARVVTYNVLSSHLAEPTYFTHCDANDLRAETRLRRVIEKLEPEVERRAVVGLQEVSMTWAGPLHAYFAKRGYAFIVSLYGKPFNNYMGVGL 106
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BLAST of Ec-27_006850.1 vs. uniprot
Match: K8EZC0_9CHLO (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EZC0_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 7.910e-25
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    4 DFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            + RV TYN+L SHLAEPT+F  C P+NLDA  RL+RV+ KL  E+ K S+I LQEV + W+G LH +F  RGY  V+  YG  FNNY G  L
Sbjct:   12 NIRVTTYNVLSSHLAEPTYFTSCDPKNLDALVRLERVQKKLSVEMEKRSIIGLQEVSMTWSGPLHAFFANRGYHVVSHLYGKPFNNYMGVLL 103
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BLAST of Ec-27_006850.1 vs. uniprot
Match: A0A7S3BQZ3_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BQZ3_9VIRI)

HSP 1 Score: 99.8 bits (247), Expect = 1.300e-23
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   10 RVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            RVATYN+L   L  P  F  C+P  LD   RL+RVK KL+AE+++GSV+CLQEV + WAG+LH +F  RGY FV   Y   F++Y G  L
Sbjct:   54 RVATYNVLSQTLCRPNHFTACAPEALDPEARLERVKEKLEAEVAQGSVLCLQEVSMSWAGELHTFFDKRGYRFVETLYSGPFSDYMGVGL 143
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BLAST of Ec-27_006850.1 vs. uniprot
Match: A0A7S0WMR5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WMR5_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 1.170e-22
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    4 DFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            + RV TYN+L S LA    FP C+P +L A  R KR+  KL+AE+ +GS++CLQEV ++WAGDLH +F  RG+ F+ + YG  FN Y G  +
Sbjct:  101 EVRVVTYNVLSSKLARSEQFPSCAPEDLKANVRYKRILTKLEAEVEQGSILCLQEVPMEWAGDLHTFFQQRGFHFLVSLYGTPFNGYMGVGI 192
[Close]
BLAST of Ec-27_006850.1 vs. uniprot
Match: A0A7S4AH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AH58_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.010e-21
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            M  RVATYN+L SHL+EP ++   +P +L+   RL  V  K+DAEI K SV+CLQEV   WAG  H +F  +GY  VT  YG  FN Y G A+
Sbjct:   69 MKVRVATYNVLSSHLSEPEYYSTLNPEHLNPTNRLPSVLQKIDAEIEKSSVVCLQEVSHDWAGRFHAHFCNKGYHLVTGFYGKKFNGYMGVAV 161
[Close]
BLAST of Ec-27_006850.1 vs. uniprot
Match: A0A6T8PH94_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PH94_HEMAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.280e-21
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   10 RVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEAL 279
            RV TYN+L S L  P+++  C P NL  PTRL RVK KL  EI +GS+ CLQEV + W G+LH +F  + Y+ V + YG+ FN Y G A+
Sbjct:    5 RVVTYNVLSSSLCSPSFYTDCLPSNLHPPTRLARVKEKLQKEIERGSICCLQEVSMLWCGELHSFFDQQNYSMVHSLYGVAFNGYMGVAI 94
The following BLAST results are available for this feature:
BLAST of Ec-27_006850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY4_ECTSI3.990e-95100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSY2_ECTSI1.190e-5393.55Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7R9UGV8_DIALT5.040e-2960.00Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A8J5XKH1_DIALT1.100e-2660.00Endo/exonuclease/phosphatase domain-containing pro... [more]
A4S1B2_OSTLU1.600e-2555.43Endo/exonuclease/phosphatase domain-containing pro... [more]
K8EZC0_9CHLO7.910e-2555.43Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7S3BQZ3_9VIRI1.300e-2352.22Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S0WMR5_9CHLO1.170e-2248.91Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S4AH58_9STRA1.010e-2150.54Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6T8PH94_HEMAN1.280e-2150.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6263627..6264416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue2.1e-43
Seed eggNOG ortholog2880.D7FSY2
Length399
KEGG koko:K19612
Hectar predicted targeting categoryother localisation
Gene idEc-27_006850.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs2CXNT@1,2RYRW@2759
EC3.1.13.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006850Ec-27_006850Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6263627..6264416 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006850.1.2Ec-27_006850.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6263627..6263890 -
Ec-27_006850.1.1Ec-27_006850.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6264282..6264416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006850.1CDS:Ec-27_006850.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6263627..6263890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006850.1Ec-27_006850.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6263627..6264416 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006850.1 ID=Ec-27_006850.1|Name=Ec-27_006850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=133bp
MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGS
VICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEALVGHPSMH
CSHDRRRPVVATLTAVCSRIPQGKSVATRTSC*
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spliced messenger RNA

>Ec-27_006850.1 ID=Ec-27_006850.1|Name=Ec-27_006850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=399bp|location=Sequence derived from alignment at chr_27:6263627..6264416- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTCCGCGTGGCGACGTACAATATCCTCTGCAGCCACCTGGCGGA
GCCGACCTGGTTCCCTCAGTGCAGCCCTAGGAACTTGGATGCTCCCACCC
GGTTGAAGAGGGTCAAGCACAAGCTGGATGCGGAGATATCGAAAGGGTCT
GTGATATGCCTGCAAGAGGTGGGCATCCAGTGGGCAGGCGACCTACACGT
GTACTTCATGGCCCGGGGGTACGCGTTCGTGACGGCGCATTACGGCATGC
ACTTCAACAACTACACGGGTGAGGCGCTGGTTGGGCATCCGAGTATGCAC
TGCAGTCACGACCGGCGAAGACCTGTTGTTGCCACACTGACTGCTGTGTG
TTCCCGCATCCCACAAGGAAAGAGTGTGGCTACGAGAACTTCCTGCTGA
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protein sequence of Ec-27_006850.1

>Ec-27_006850.1 ID=Ec-27_006850.1|Name=Ec-27_006850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=133bp
MDFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGS
VICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTGEALVGHPSMH
CSHDRRRPVVATLTAVCSRIPQGKSVATRTSC*
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mRNA from alignment at chr_27:6263627..6264416-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006850.1 ID=Ec-27_006850.1|Name=Ec-27_006850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=790bp|location=Sequence derived from alignment at chr_27:6263627..6264416- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACTTCCGCGTGGCGACGTACAATATCCTCTGCAGCCACCTGGCGGA
GCCGACCTGGTTCCCTCAGTGCAGCCCTAGGAACTTGGATGCTCCCACCC
GGTTGAAGAGGGTCAAGCACAAGCTGGATGCGGAGGTAGGCGGGTGCGGG
CGGAACACGGCAACACGGCTTGACAGCAGCTAGCTGCTGTTCATGTATAT
GTAGCACAGAGCCACGACATCGAACATCGAAGTCGATGCATCTTGTCTGT
GTGCATGTTTCTTGTGCTGCTTGCTTCTCGTGCAGTTGCTGCTACACAGC
GAGATAGCCAGGCGCTACCCCAACGCCGCCGTAATCTTGTCGCAGTCAGT
TGCTTGGAACCGGGTCCCGACCCCTTTCCAACTGCACACCACCGCTTACA
GCCGATGTACAGCTCGACACAGCTTCCCTGCAGGGAGGAGATTTTGCCAT
GATTTGACCCAAGGGACCCAAACATTTCCCACCTCCTTGCTTTTGGCGTG
TATCGTGTGTCGTGTGCGCGTTGCAGATATCGAAAGGGTCTGTGATATGC
CTGCAAGAGGTGGGCATCCAGTGGGCAGGCGACCTACACGTGTACTTCAT
GGCCCGGGGGTACGCGTTCGTGACGGCGCATTACGGCATGCACTTCAACA
ACTACACGGGTGAGGCGCTGGTTGGGCATCCGAGTATGCACTGCAGTCAC
GACCGGCGAAGACCTGTTGTTGCCACACTGACTGCTGTGTGTTCCCGCAT
CCCACAAGGAAAGAGTGTGGCTACGAGAACTTCCTGCTGA
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Coding sequence (CDS) from alignment at chr_27:6263627..6264416-

>Ec-27_006850.1 ID=Ec-27_006850.1|Name=Ec-27_006850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=399bp|location=Sequence derived from alignment at chr_27:6263627..6264416- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACTTCCGCGTGGCGACGTACAATATCCTCTGCAGCCACCTGGCGGA
GCCGACCTGGTTCCCTCAGTGCAGCCCTAGGAACTTGGATGCTCCCACCC
GGTTGAAGAGGGTCAAGCACAAGCTGGATGCGGAGATATCGAAAGGGTCT
GTGATATGCCTGCAAGAGGTGGGCATCCAGTGGGCAGGCGACCTACACGT
GTACTTCATGGCCCGGGGGTACGCGTTCGTGACGGCGCATTACGGCATGC
ACTTCAACAACTACACGGGTGAGGCGCTGGTTGGGCATCCGAGTATGCAC
TGCAGTCACGACCGGCGAAGACCTGTTGTTGCCACACTGACTGCTGTGTG
TTCCCGCATCCCACAAGGAAAGAGTGTGGCTACGAGAACTTCCTGCTGA
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Synonyms
The feature 'Ec-27_006850.1' has the following synonyms
Synonym
Esi0241_0045
Esi_0241_0045