Ec-27_005060.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005060.1
Unique NameEc-27_005060.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length39
Homology
The following BLAST results are available for this feature:
BLAST of Ec-27_005060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:4580762..4582351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length117
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-27_005060.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005060Ec-27_005060Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 4580762..4582351 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005060.1.2Ec-27_005060.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4580762..4580843 -
Ec-27_005060.1.1Ec-27_005060.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4582317..4582351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005060.1CDS:Ec-27_005060.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 4580762..4580843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005060.1Ec-27_005060.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 4580762..4582351 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005060.1 ID=Ec-27_005060.1|Name=Ec-27_005060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=39bp
MCGRTAAHTCGRTAVDVRTNGRAHVWDVSFRFLLYHAV*
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spliced messenger RNA

>Ec-27_005060.1 ID=Ec-27_005060.1|Name=Ec-27_005060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=117bp|location=Sequence derived from alignment at chr_27:4580762..4582351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGACGAACGGCCGCGCACACGTGTGGGAGGACCGCCGTCGATGT
GCGGACGAACGGCCGCGCACACGTGTGGGATGTGAGTTTTCGTTTCCTTC
TCTATCATGCCGTTTAG
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protein sequence of Ec-27_005060.1

>Ec-27_005060.1 ID=Ec-27_005060.1|Name=Ec-27_005060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=39bp
MCGRTAAHTCGRTAVDVRTNGRAHVWDVSFRFLLYHAV*
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mRNA from alignment at chr_27:4580762..4582351-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005060.1 ID=Ec-27_005060.1|Name=Ec-27_005060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1590bp|location=Sequence derived from alignment at chr_27:4580762..4582351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCGGACGAACGGCCGCGCACACGTGTGGGAGGTGAGTTTTCGTTTC
CTTCTCTATCATGCCGTTTAGTTCCGGTGTTGACTTTTCTTACGGTGGGG
TTTCGCAAAAATCCTTCCATCGCCGGTCGTTCGTTCGTTCGTATATCATA
GACAGCATGAGCAATACGTGCCTCGGCAAAGCTTGGACAAATTGATGTTC
CCTTCCGAAATAGCCACTGGTCGCAAGACCCTCCGGAATTAAATTAAACA
CCGAAGGGTTAAGGAGCTATGATGACGTAAATCTGTGTAGCATTTCCATG
ATGACAACATCGTGGATACCTGGGGAAGCGGTCCACGGGACTGCTGGTGC
CCAAGTGGTACCGGGGGAAGCAGTCCATGGGGCCGCGGGTGCAACCGTTT
GTTTTTCGGTGGGAGGAGGGGTCCATTCGCGTTGGGGAGCGGGGGTAGCA
CCGGGGGAAGCGGTCCACGGGGCCGCCGGTGCCCCGGTGGCACCGGGGGA
TGCGGTCCACTCGCGTTGGGCAGCGGGTGCAACCGTTTGTACCTCTGCTG
GGGGAGGGGTCCATTCGCGTTGGGGAGCGGCGGTAGCACCGGGGGAAGCA
GTCCACGGGGCTGCTGGTGCCCATGTTGCACCGGGGGATGCAGTCCATTC
GCGTTGGGGAGCGGGAGTGGCACCGGGGGATGCGGTCCATGGGGCGGCCG
GTGCCCATGTGGCACCGGGGGATGCAGTCCACTCGCGTTGGGCAGCGGGT
GCAACCGTTTGTACCTCTGCTGGGGGTGGGGTCCATTCGCGTTGGGGCGC
GGCGGTAGCACCGGGGGAAGCAGTCCACGGGGCTGCTGGTGCCCATGTGG
CACCGGGAGATGCAGTCCATTCGCGTTGGGGAGCGGGAGTGGCACCGGGG
GAAGCGGTCCACTCGCGTTGGGCAGCGGGTGCAACCGTTTGTACCTCTGC
TGGGGGAGGGGTCCATTCGCGTTGGGGCGCGGCGGTAGCACCGGGGGAAG
CAGTCCACGGGGCTGCTGGTGCCCATGTGGCACCGGGAGAAGCGGTCCAT
GGCGCGGCGGGTGCCCATGTGGCACCGGGGGAGGCGGTCCACGGGGCAGC
AGGTGCCCACGTTTGTTTTTCGGTAGGAGGAGGGGTCCATTCGCGTTGTG
GCGCGGGGGTGGCTCCTGACATGCCCAAGATATTCCAAAAGGGGAAACCA
TGGGTGGAAGCGAAGTGAACAACGAGGCTAGCTGAACCACGTCGGCGAGC
CACTAGCAGCAGAGCAAAAGGAAGCACGATCTCACTTTTCTTCTCCAGTG
TAACGATAAAGAACATAGAGAGGGCACGCCGCATGTTTTCTAGACTACTC
GAATCATGTATGTTGGCGTACGCTTGTAGGGTAACGACGCAGCACCTCTT
CCAATCAGTTGCGATAGCAGCAGGAAAATATATAAATATGAAAGCGACCC
TCATGGGCGGACCTGTATTCGTCTTCTGTGCTTGTGCCGGCAAAGTCGTA
TACCGCAGGACCGCCGTCGATGTGCGGACGAACGGCCGCGCACACGTGTG
GGATGTGAGTTTTCGTTTCCTTCTCTATCATGCCGTTTAG
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Coding sequence (CDS) from alignment at chr_27:4580762..4582351-

>Ec-27_005060.1 ID=Ec-27_005060.1|Name=Ec-27_005060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=117bp|location=Sequence derived from alignment at chr_27:4580762..4582351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCGGACGAACGGCCGCGCACACGTGTGGGAGGACCGCCGTCGATGT
GCGGACGAACGGCCGCGCACACGTGTGGGATGTGAGTTTTCGTTTCCTTC
TCTATCATGCCGTTTAG
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Synonyms
The feature 'Ec-27_005060.1' has the following synonyms
Synonym
Esi000_0755
Esi_000_0755