Ec-00_005500.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005500.1
Unique NameEc-00_005500.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length43
Homology
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BLAST of Ec-00_005500.1 vs. uniprot
Match: D7G6F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 5.900e-26
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 WGYPGELISRALKKANMDWPGEDVFDPRQLTCRSWPVDVPGP 127
            WGYPGELISRALKKANMDWPGEDVFDPRQLTC SWPVDVPGP
Sbjct:   33 WGYPGELISRALKKANMDWPGEDVFDPRQLTCLSWPVDVPGP 74
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BLAST of Ec-00_005500.1 vs. uniprot
Match: D7G196_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G196_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.370e-23
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 MGLSRGAHLSRAEKGEHGLARGGRVRPPATDMPFMACGCSRS 126
            MGLSRGAHLSRAEKGEHGLARGGRVRPPATDMPFMACGCSRS
Sbjct:    1 MGLSRGAHLSRAEKGEHGLARGGRVRPPATDMPFMACGCSRS 42
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BLAST of Ec-00_005500.1 vs. uniprot
Match: D7FIY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.030e-16
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 MGLSRGAHLSRAEKGEHGLARGGRVRPPATDMPFMACGCSRS 126
            MGLSRGA+LSRAEKGEHGLARGGRVRPPA  MPFM  GC RS
Sbjct:    1 MGLSRGANLSRAEKGEHGLARGGRVRPPAIVMPFMGGGCFRS 42
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BLAST of Ec-00_005500.1 vs. uniprot
Match: D7G5D1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D1_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.990e-11
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:   50 MDWPGEDVFDPRQLTCRSWPVDVPGP 127
            MDWPGEDVFDPRQL CRSW VDVPGP
Sbjct:    1 MDWPGEDVFDPRQLACRSWAVDVPGP 26
The following BLAST results are available for this feature:
BLAST of Ec-00_005500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6F5_ECTSI5.900e-2697.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G196_ECTSI1.370e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIY3_ECTSI1.030e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5D1_ECTSI3.990e-1192.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8785666..8786061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length129
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_005500.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005500Ec-00_005500Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8785666..8786061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005500.1.2Ec-00_005500.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8785666..8785791 -
Ec-00_005500.1.1Ec-00_005500.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8786059..8786061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005500.1CDS:Ec-00_005500.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8785666..8785791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005500.1Ec-00_005500.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8785666..8786061 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005500.1 ID=Ec-00_005500.1|Name=Ec-00_005500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=43bp
MGLSRGAHLSRAEKGEHGLARGGRVRPPATDMPFMACGCSRS*
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spliced messenger RNA

>Ec-00_005500.1 ID=Ec-00_005500.1|Name=Ec-00_005500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=129bp|location=Sequence derived from alignment at chr_00:8785666..8786061- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTATCCCGGGGAGCTCATCTCTCGCGCGCTGAAAAAGGCGAACA
TGGACTGGCCAGGGGAGGACGTGTTCGACCCCCGGCAACTGACATGCCGT
TCATGGCCTGTGGATGTTCCCGGTCCTGA
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protein sequence of Ec-00_005500.1

>Ec-00_005500.1 ID=Ec-00_005500.1|Name=Ec-00_005500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=43bp
MGLSRGAHLSRAEKGEHGLARGGRVRPPATDMPFMACGCSRS*
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mRNA from alignment at chr_00:8785666..8786061-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005500.1 ID=Ec-00_005500.1|Name=Ec-00_005500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=396bp|location=Sequence derived from alignment at chr_00:8785666..8786061- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGAGGCATTTTCCTCATCATCCTCTCCGATTACTACTGTAACAGCA
GGCAGGATATATGCGCGCGTCAAGCGGTTTGGTTAGGACCCCTGCGTGGA
CACTTGAGCTGCGAGCGCGTTCTTCGCGGCCGCTACCTCTACAATACCAG
GCCAAGGCGAGGCTTGTCCATCTGCCCCGCGTCACCTCTAATGTGTTTCC
ATCCACTTCCTTAACCGTGGCAACAAACACTTGACTAACGGATTGAGGAA
CCTTTCCATGGCGTTAACAGGGGCTATCCCGGGGAGCTCATCTCTCGCGC
GCTGAAAAAGGCGAACATGGACTGGCCAGGGGAGGACGTGTTCGACCCCC
GGCAACTGACATGCCGTTCATGGCCTGTGGATGTTCCCGGTCCTGA
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Coding sequence (CDS) from alignment at chr_00:8785666..8786061-

>Ec-00_005500.1 ID=Ec-00_005500.1|Name=Ec-00_005500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=129bp|location=Sequence derived from alignment at chr_00:8785666..8786061- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCTATCCCGGGGAGCTCATCTCTCGCGCGCTGAAAAAGGCGAACA
TGGACTGGCCAGGGGAGGACGTGTTCGACCCCCGGCAACTGACATGCCGT
TCATGGCCTGTGGATGTTCCCGGTCCTGA
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Synonyms
The feature 'Ec-00_005500.1' has the following synonyms
Synonym
Esi0443_0016
Esi_0443_0016