Ec-00_005170.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005170.3
Unique NameEc-00_005170.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length236
Homology
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BLAST of Ec-00_005170.3 vs. uniprot
Match: D8LMP4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP4_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 3.390e-126
Identity = 217/275 (78.91%), Postives = 218/275 (79.27%), Query Frame = 1 
Query:  835 AGRSQGMVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTP----------------------------------IPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLPQQLLVVVPPVVLPVGRTDGARVPAATLLRAAXXXXMAVVVGGRSGSGFASRPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS 1557
            AGR + MVAGGECPICQGLLPDEERGILRC                     NHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTP                                  IPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLPQQLLVVVPPVVLPVGRTDGARVPAATLLRAAXXXXMAVVVGGRSGSGFASRPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS
Sbjct:   30 AGR-KAMVAGGECPICQGLLPDEERGILRC---------------------NHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPHDPSQVRTKAQIKRARAKRFKCRKPASVVFDDIYIPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLPQQLLVVVPPVVLPVGRTDGARVPAATLLRAAXXXXMAVVVGGRSGSGFASRPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS 282
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BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5JQD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.470e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = -1 
Query:  187 MARDSVDDSGGSLEQDAGPIFPAVAELSQLSMRLAVLRPDSPSLLVIIVLRQ 342
            MAR+SVDDSGGSLEQ+  PI PAVAELSQLSMRLAVLRP SPSLLVIIVLRQ
Sbjct:    1 MARNSVDDSGGSLEQNVAPISPAVAELSQLSMRLAVLRPVSPSLLVIIVLRQ 52
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BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5JR52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR52_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.040e-14
Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  835 AGRSQGMVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVR 1119
            AGR + MVAGGEC ICQGLLPDEERGILRC+SA A    +     +L      +  F C        S+C    ++VRSITKTLSLREIEQFNVR
Sbjct:   35 AGR-KAMVAGGECVICQGLLPDEERGILRCLSAVAELNIAAIAEFLLL-----LVVFSCC----SGSSSC----LKVRSITKTLSLREIEQFNVR 115
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BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5KR96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR96_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.970e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = -2 
Query: 2082 CTLPNAP*ILLITVIAARPTTGRPTNHFLTAGRRLSDASAP 2204
            CT P AP IL +TV+AARPTTGRPTNHFLTA RRL+DASAP
Sbjct:   28 CTRPKAPQILFVTVVAARPTTGRPTNHFLTAVRRLADASAP 68
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BLAST of Ec-00_005170.3 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.700e-10
Identity = 44/121 (36.36%), Postives = 56/121 (46.28%), Query Frame = 1 
Query:  871 CPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKN 1233
            C IC   LP+ ERG+L C                      HVFCF CIH+WTK  S CP CRV+++ ITKTLS  +  +    T  P    + ++ K R Q+K        A H   R KN
Sbjct:  176 CAICCDKLPNLERGVLSC---------------------GHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKR-------ARHRDSRAKN 268
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BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.260e-9
Identity = 38/94 (40.43%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:  871 CPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFN--VRTPIPFTVTK 1146
            C IC   LPD ERG+L C                      HVFCF CIH+WTK  S CP CRV+++ ITKTLS  +  +     R P+   VT+
Sbjct:   80 CAICCDKLPDLERGVLSC---------------------GHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKSKGETRKPVSLAVTR 152
[Close]
BLAST of Ec-00_005170.3 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.270e-8
Identity = 49/138 (35.51%), Postives = 61/138 (44.20%), Query Frame = 1 
Query:  871 CPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTE-SACPVCRVEVRSITKTLSLREIEQFNV-RTPI----------------PFTVTKAVRVKLRTQMK---EMNRLLADAPHPQC 1221
            CPICQ LLP+E RGI++C                      HVFC KC+ +W K + ++CP CR +V  I KTLSL E  + N  R P+                PF        K+R   K   E  R  A APHPQ 
Sbjct:   57 CPICQDLLPEENRGIVKC---------------------GHVFCLKCVLQWVKKQQNSCPTCRAKVCHIKKTLSLAEALEKNANRKPLTKAQLKRTKRKSTIGKPFPKPDITTEKIRVHKKVSREQIRQNAMAPHPQA 173
[Close]
BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.220e-8
Identity = 45/136 (33.09%), Postives = 62/136 (45.59%), Query Frame = 1 
Query:  862 GGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTE-SACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAVRVKLRTQMKEMNRLLA-DAPHPQCRWKNRGLQRRRPDL 1263
            G  CPICQ LLP+E RGIL+C                      HVFC KC+ +W K + ++CP CR EV  I +TLS  E  + N     P           + Q+K   R  A   P P  R+    + +++PD+
Sbjct:   78 GDRCPICQDLLPEENRGILKC---------------------GHVFCLKCVLQWVKKQQNSCPTCRAEVCHIKRTLSSAEALEKNADRKPP----------RKAQLKRAKRKSAVGKPSPGDRYSESDVLQQKPDI 182
The following BLAST results are available for this feature:
BLAST of Ec-00_005170.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LMP4_ECTSI3.390e-12678.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQD8_9PHAE5.470e-1788.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR52_9PHAE3.040e-1455.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR96_9PHAE2.970e-1180.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV7_ECTSI4.700e-1036.36Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5K2A7_9PHAE1.260e-940.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP5_ECTSI1.270e-835.51RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU9_9PHAE2.220e-833.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7875115..7884117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2327
Hectar predicted targeting categoryother localisation
Gene idEc-00_005170.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005170Ec-00_005170Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7875115..7884117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005170.3Ec-00_005170.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7875878..7881236 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005170.3.6Ec-00_005170.3.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7875115..7876219 -
Ec-00_005170.3.5Ec-00_005170.3.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7879062..7879154 -
Ec-00_005170.3.4Ec-00_005170.3.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7880964..7881288 -
Ec-00_005170.3.3Ec-00_005170.3.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7882071..7882245 -
Ec-00_005170.3.2Ec-00_005170.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7882637..7883115 -
Ec-00_005170.3.1Ec-00_005170.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7883968..7884117 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0051703UTR:Ec-00_005170.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 7875115..7875877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005170.3CDS:Ec-00_005170.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7875878..7876219 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0051705UTR:Ec-00_005170.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 7881237..7881288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005170.3 ID=Ec-00_005170.3|Name=Ec-00_005170.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=236bp
MVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFC
FKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAV
RVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLP
QQLLVVVPPVVLPVGRTDGARVPAATLLRAAAAAVMAVVVGGRSGSGFAS
RPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS*
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spliced messenger RNA

>Ec-00_005170.3 ID=Ec-00_005170.3|Name=Ec-00_005170.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2327bp|location=Sequence derived from alignment at chr_00:7875115..7884117- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GAGCAGTGCGGGGCCCAAAGACGCAAAGAGGGAGGGAGGTAGGGAGAGAG
GGAGAGAGGGAGAGAGAACTGACCTATCTCACGCTTGGTGGAGGTTTTGG
TCTTGGCGGACGAGGATCCTTGGCACCATGTGGTTGATCTTCCAAACCAG
CAAGTACCCGCTATTGTCACAGGGACGACAAGTTTCACTGCCGAAGCACG
ATTATAACAAGCAACGACGGCGAGTCCGGGCGTAAGACAGCTAGCCGCAT
AGACAGCTGGCTCAGCTCCGCAACCGCTGGAAAAATCGGACCAGCATCTT
GCTCCAGCGAGCCACCGGAGTCATCCACGGAGTCCCGTGCCATCACGTCA
GCATGGCACCCCCGAGGATACAAAAGGATAACAACAACGGCGACGATAGC
GACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAACAA
CAACAACGTCGCCAAGGCCCCAAACGCGCATTGGATCAACCTCGGCTACT
CCAAGTACTATCCCGGCACGGCCCCGACGCCGCACCCCTGTAGCATCACC
AGGGCCTACCCAGAGCCACCCCTGCTGATCGCGCGGCGTAACGCAGCAGC
TACAGCTGCAGGAGAAACAGCATCAGGACTCTCAGGCGGCGGTGGTAGTA
GCGGTAACGGACCGAGGAGCAACCGCAAACGGCGGCGCAATCAAAGAGAA
GGTGACGACGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGA
GAAAGAAGCGACCCCGCGCGGAGGAGGCACGGTCATCATCCCGAGAGGGT
AAAGGCCGAACCCTCTGACGGAGGAAGCAGATCTAGCGCTGGCCGGTCGC
AAGGCCATGGTAGCAGGCGGGGAGTGCCCCATTTGTCAGGGCTTGCTTCC
AGACGAGGAAAGGGGTATCCTCAGATGCGTGAGTGCTGCCGCTGTCCCCC
GCCCGTCACCTTCGATTGGAACGATCCTCTCTCCTCCACAGAACCACGTG
TTCTGCTTCAAGTGCATCCACAAGTGGACGAAGACCGAAAGCGCGTGCCC
CGTTTGCCGAGTTGAGGTCAGGTCCATCACCAAGACACTCTCCCTGAGGG
AGATCGAGCAGTTCAACGTTCGCACGCCTATTCCTTTCACCGTGACGAAG
GCCGTACGGGTGAAGCTTAGGACCCAGATGAAGGAGATGAATCGCCTCCT
GGCTGACGCTCCGCACCCGCAGTGCCGGTGGAAGAACCGAGGTCTGCAGC
GGCGGCGTCCGGATCTTCCTCTTCATCTGGACTCCCTGGCGCTAGGTCTT
CTGCCACAGCAGCTGCTGGTGGTGGTGCCGCCGGTGGTGTTGCCCGTAGG
TAGGACTGATGGCGCGCGCGTGCCTGCGGCGACGCTCTTGCGGGCGGCGG
CGGCGGCGGTGATGGCGGTGGTAGTTGGTGGCCGTAGTGGCAGTGGTTTC
GCCTCCCGACCAGGCGCCGCTCCGGTCGTCCCAAGTAAAAAACGAGGGGC
CCGACAGAGTGGACAGCTCCTAGGTGGGACCTGTAGCCCAGCAACAGAGC
CCCCGCCCTCTTGAGTCGAAACGCGTTCTCAGCTTAAGTGCGTCGTGTTT
CATGCTTCGGGCTTTGGGGTTTCGGGGGCGGTAGCGCGTCGTTGGTGTTG
TTACCCCTCGCCTCGCGCACGGTAGCGACAGATGACGGTGGTGTTGAGGG
GAGGAGGAGGGGAGGGGAGAGGGCCGAAGGAGGCGTTGTCGCTGCCCTTG
CGCGCTACAGTATCACCCCGAGGTGGAAACAACAAACCTTCGTCGGCCGA
CACGGGGTCGCGTAGACCGCTTCGTGTTTAGGGCTTCGCCGTTCGGGAGG
CGCGGGGGAGGGCGCGCCACGGTCGACTTGCCGCCCCCCGATGGCAGCAA
TGTGGTAGCTGTGTCGAGAGGGCAACGGGCGCCGGGCTTGCTGCACGACT
CTTTTCAGCCAGCGCCTTGTAAGAAGATTCGCCCCCTACGGAAGACGGAG
ACTCTCTTTTCACCCTTTCGGCTTTGATTTCATCTTTTGGCTTGGTCTCA
TCGTTTGGCTTGAGTGGCAATACCCTCAGGGTCGACGGCGCAGAAGCGTC
AGACAGCCTCCTACCCGCGGTCAGGAAGTGGTTGGTTGGTCTTCCGGTCG
TCGGACGTGCTGCAATAACCGTGATGAGCAGGATCTACGGTGCGTTCGGG
AGGGTACAGTACAAACAGGTTGGGGCAGGGTGTGCCGGACGCCTAAAAGG
CTGGACAATGTAGTGTAGAGGGCGTTCATCAGTAGCACAATCATGTTGTG
AGGAGAGGCTGCGGAACTACAGGTGGN
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protein sequence of Ec-00_005170.3

>Ec-00_005170.3 ID=Ec-00_005170.3|Name=Ec-00_005170.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=236bp
MVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFC
FKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAV
RVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLP
QQLLVVVPPVVLPVGRTDGARVPAATLLRAAAAAVMAVVVGGRSGSGFAS
RPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS*
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mRNA from alignment at chr_00:7875115..7884117-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005170.3 ID=Ec-00_005170.3|Name=Ec-00_005170.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=9003bp|location=Sequence derived from alignment at chr_00:7875115..7884117- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GAGCAGTGCGGGGCCCAAAGACGCAAAGAGGGAGGGAGGTAGGGAGAGAG
GGAGAGAGGGAGAGAGAACTGACCTATCTCACGCTTGGTGGAGGTTTTGG
TCTTGGCGGACGAGGATCCTTGGCACCATGTGGTTGATCTTCCAAACCAG
GCACGTGAAAAAATGTCCGCAAATTCGCAGCAGCAGTATACCAAACGGCT
CGTTTACATGTTTCGGCACGCAGCAGCAGCGACAACACCACGATTAGTCG
GGGGGGAAGGAGGAAGAGGTATTTACCACGCTTTTGATGGAGTGAAAGAG
TGCCCATTGCCTCTGAGAATCGTAGGGAAAGTCCACAGCAAACACCTCAT
TACACAACCGTCTTGTTTTGTAGATTGTAGCCGTTGTAGGGTCCATAAAT
ACAACATGTTTCCACCAACCGACCCAGCTGCGCACCTGGCACTCGGTTCG
GTGCACTGCTCTGTTCGTTACTACCTACTTATACAGGTTCTTGAACACCG
CCGTGTGTGCGATCCGCCCGACGTGTGTGTGTAAGGGGCGTGTTGCGTTG
TGGCCCTCATAGTGTAGTAGCGGTTGACGCCAATGGTTCTGGGCGGCGAA
AGAGCCGGATCTAGTAGGGACGGTGGGCGGTGGGTCAGTCGTCGCAGACG
GTGGAGCGCGTTGCATCGCAGAACCCCGCTCTTGCAAGTACTGTACTGCT
GTTCGAGGATCTCTCGTCGGCGAGGTGGCATGGGGTTCAGTGGTACTGAA
TTTCAGTGTTAAGCGTGTCTTTGGAGATGATACAGCAGTAGCTCGCGACG
AGATGGGAACTTTTTACCAACGATACAAGTCCTCAGGGCAGTTGTCCTGG
ATTGTTATCACACTTGCAGTACTGTAGGCAAACTGATGTACTGTATGCAC
AGCAATGTGAGAACGCCAGAAAAATCCGGCTGTTCTTACCTGGCCACCCG
TTGCTTTTCTTTTCCATCCCTATCCCTTGCACCGCCGAAACACCACAAGC
AGCAAGTACCCGCTATTGTCACAGGGACGACAAGTTTCACTGCCGAAGCA
CGATTATAACAAGCAACGACGGCGAGTCCGGGCGTAAGACAGCTAGCCGC
ATAGACAGCTGGCTCAGCTCCGCAACCGCTGGAAAAATCGGACCAGCATC
TTGCTCCAGCGAGCCACCGGAGTCATCCACGGAGTCCCGTGCCATCACGT
CAGCATGGCACCCCCGAGGATACAAAAGGATAACAACAACGGCGACGATA
GCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAAC
AACAACAACGTCGCCAAGGCCCCAAACGCGCATTGGATCAACCTCGGCTA
CTCCAAGTACTATCCCGGCACGGCCCCGACGCCGCACCCCTGTAGCATCA
CCAGGGCCTACCCAGAGCCACCCCTGCTGATCGCGCGGCGTAACGCAGCA
GCTACAGCTGCAGGAGAAACAGCATCAGGACGTGTGCGCTGGTGTGGGGC
TTGAGCTTCTCGTCCATAATTGACGTGTTTAGCCGCAATCTGTAGTACCC
AGTTCGTCACGTCGGCCTGCTATTTGTGAATGGTTTCGTGTATTTCATGT
TCCTCGAAGACCTCTACCAACTTTCGACTCGCGGTGTTTTTGGGCCTTTT
CGGGTGATGGCTTTAGGTTTGTTCTCAATCTATCTAGGTGTTTCCGCCGG
CAGTGCTGTTTGTGTCTTGCGTCAGCGCTCGCCTCGGGACTGAGGCGTCG
TGTTCCTGAGAAGCCGGTCGTTCGACCGAAGTCAAACTTACGGGAGAGCG
GGAAGAAAACTCGATATTCACCGCTTCAACCGTTTCGCTTAATAGTTCTC
ATCATGCCCCCCCCCTCACCAGTCTCAGGCGGCGGTGGTAGTAGCGGTAA
CGGACCGAGGAGCAACCGCAAACGGCGGCGCAATCAAAGAGAAGGTGACG
ACGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGAAAGAA
GCGACCCCGCGCGGAGGAGGCACGGTCATCATCCCGAGAGGGTAAAGGTG
TGCGTAGTTGTCGTTGTGCTTGGACTCCACGACACGCATGCATGTGTCGT
GGCGGGTAATTAGGATGCGTTCCTGCGAGCGCACACGGAAGGAAGGAGGG
TGGGAAACCTCCACCGACGTCGATGTGTACGACTCGTTGGACTCTCACGC
TAACGGCTCTTTTGTTCGACACATATTAAACATTTTTTGGAGTCTTCATC
TGGTACGCGCGTGCCTGCCACCGCGGTCACCAACCCATCCTCCTCCGCCG
GTAAAAAGTCAGCCTGACAAATATATTGTACTTCGAAGTAGATGAGAAAT
TGAGCCGGAATTTTACCTACAATATCTATATTTTCCGCGATCGGTCGTCC
GATCGTGGACTTACCTGAGGATGGTGCGCATGCTTGTGAGACGTGATTCT
TGCGGTGTTTTCATCAGAAACGCCCTCCCATTGAAAAATTTTAATCGAAA
AGTCGCAAGAAGAGTGGGGAACGCAGGGGAGGAACCCTATATCTCCCCCG
GGTGTTGAGGTATGGTATATGGTGTCCTTCGGAAGTAGTATGTAGCAGAC
AACGCTCGTACAGCATATAATACTTGGAGTGACACGCACCGATAGACAGA
GAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGACACCCGTCAGCCATTT
CCCGTCCTTGTTTTCCCTCAATACTTGAGCCCTTCCGCCGACCTCCCTCA
CTATTTGACATGGAAAGTACGCTTCGTTGATGCGTCTCCTCTTCTTCCTC
GTTTCACCCATTTCGTCACGATTTTTCAGGCCGAACCCTCTGACGGAGGA
AGCAGATCTAGCGCTGGCCGGTCGCAAGGCCATGGTAGCAGGCGGGGAGT
GCCCCATTTGTCAGGGCTTGCTTCCAGACGAGGAAAGGGGTATCCTCAGA
TGCGTGAGTGCTGCCGCTGTCCCCCGCCCGTCACCTTCGATTGGAACGAT
CCTCTCTCCTCCACAGAACCACGTGTTCTGCTTCAAGTGCATCCACAAGT
GGACGAAGACCGAAAGCGCGTGCCCCGTTTGCCGAGTTGAGGTCAGGTCC
ATCACCAAGACACTCTCCCTGAGGGAGATCGAGCAGTTCAACGTTCGCAC
GCCTGTGAGTTCGTTCTTATGCTTGGCATGGTGGTGGTTACTGTTCCGAC
GAACGGAGTGCTCTCTTTGTACACCCTGACGTCGTTATGTTTTTTTTATT
TCGTGTGATGCGTACAGTACAACTGTAGTTGGTTTGTGGTTGCTGTTTGT
TTCGGCTTTCGCGAATATTGTGATAGTATGCATTTTTCGATCACCCAGGA
CAGAACCCTCGCTAAACTAAAACATTCTAGGGTTAATCGTTGCCCATCGA
TTTAATCATGATTGCCCTCAACACGAAAGACAAGCCTCACCACGTAAGAC
AAGAGATACCTCCTCCCCCACCCCCCTGACAATTCGTTGCCTCGGCGATA
GTCCGCAGAGGTCTCTTTTCCTCGAAACAAGGCACCTACAGAAGAACGCC
TCTTCTTGTAGTAAGGAATCCACAACGAAAATTCGACTTACGGTACCCAC
AAAGGTGGTATGCATCGTTGTCTTGTCTAAAGCCTTTGTCTCAAACCTGT
GCCCAAGCCGCAAGGCAGGTTCTTCAATCGTTCGTAAGCCTCGTGAGCCT
CTTGCAACAGCAAAAACAGAGACCAAGTCAACTTCTTTTTTTCGTCTATT
CTTCTCTTGTTTCGTGTGCGTTTGTGTGATTCCAGCACGACCCTAGCCAA
GTCCGGACGAAGGCCCAGATAAAGCGGGCGAGAGCCAAGAGGTTCAAGTG
CAGAAAACCGGCGAGTGTGGTGTTCGATGATATATATGTACGAGTTTTTA
GAACATAATTCCCGCGTGCCCTTGGTAAAGGCTTAGATGGGGACACTTGT
TCGTGGTGATGTTTTGCTTTCTGTGTACTTGAAAGGCAGAGAGTATCCCC
GAAGAATTCCTCGACGTGCACTTCAACCACTAAAGTTTCGTTTTGACTGT
TGTTGTCGGCCGGCATCTGCTACCGTCGGTCGCACAAGATGTCACCCCCC
TCTTGACTGATTTGCAACGCTGGATTACTCCACAACCAAGAGGATGCCGA
AAGCTAACGATACGTGTTCGGAAAGGTCTCGACGGGACGGCTTCAACTCC
GCCATTTTCGGCACCGTCACTGCTTTTCCTGCCGAGTAGTCAAGCTTTGA
AAATCGGTGTCCAGGGGGTGTGATATCTTATGCAACCTACGGTATTTTAC
TGCTGCTCTTGATTGCTTTCCTTGACTTCGTCTTCGCTCTCTGGGGTGAG
TGTGAGTATGAAGCGCACGCGGCATAGCGAACTTTCTTTTCGGTGCTAAA
GGCTCCGTGTCAGCGAGCTGCGTCGCATGTAGACAACTGTTGCAAGTTGT
AGCTGGAAGGGTTTGCGCAAGGGGGTCATATGCCAGTACGAAGCACACGG
ACGCTCAGCGTATTGCGGTTTGGCTGCAAGAAGCATTCGCATTTCTTTCT
TTCTCTCTCTTGCGCACGTACGCGCACGGATAAATTTCTCTGTTTAGTGC
TATAGTCCCGCACCATATCGCCACGTCTATGGGATAGATGTGAGGGGTTA
CCACGGCGTGAAAGGCCTGAAAAACAGGTAGGGACAACCTCGCAATGATA
CACGTTCAACTTGCCCTACTCCCCGCCGTTCTCTTGCCCGAGGTAACCCC
CGGAGGAACAATCAGTATCGGTTTCTGAACAGTAAAAGACGGTCCGCACA
CCCCGGGGGATATGGTGGGTGTGGCAAGGCCGGGCACAATATTCAACTTA
GTGACTTGGATTTCTATGCTACGGTGGTGCAGCACCTTGTAAACCTACGC
TTACGACGGTGCGAAATATCAACGCCTGTCATATGTACAAAACCTGCTGC
TGTGAACGGGCAGATTCCTTTCACCGTGACGAAGGCCGTACGGGTGAAGC
TTAGGACCCAGATGAAGGAGATGAATCGCCTCCTGGCTGACGCTCCGCAC
CCGCAGGTGTGTGTGTGCGTGTGCGTGTGTGTGAGAAGAGAGGGGGGGGG
GGGGGCGTACTCATTTGTTGCTTGCCGTAGTCATTTGACCATTGACCACG
CGTCCCTTTCGAGACGGAGCACCGTTCCTACACCTACTAGAGACACCACC
AACATTTGGGAGCTCTTTACGTTTCTGCCACAAACTCCATAAAAATTTCT
TGCACATCTTATCCCCGTCCTCTAGGGCCTCTTGTGCCCACCATCTATCC
CCAATTATCGCGATCGTTTTTTCGCTGTTGTCTAACTTACCAAACTTGTC
CATGTCACACCCTCTCTGTCTCATTTCCTCCTCGAGATCCTCTCTTTCCT
TCCTGTACAACTCACACTCCCCAACTATGTGGGGTCTACTCTCCTCCGAT
TTGCCACATGGACATGTGTGTCTATCCTCCTCTTCCTCTCTCCTACGGCT
GGTATACCTCTTCCTCCGTTCTGGCAAGTCCAGATCGCCTACTCGAAATT
GCAATTTCAGCTTTTTCGCATAGTCCATGGGGCCGTCCAAGTACTTCTTC
ATCCCTATCCCTTCTTTCAACTTCCCGTATATCTCCAAGTGGTCTTCGCT
TCGTACCTTCTTCCAAAGGGTTGCCTCCTCCCTACTCTCTAGCATCTCCT
TGACTTTCGTCTTGAACCCCCCGAACCCTTCCGTGTCCAACGTCTCCTCC
TCGTCTCCTATCTCCTTCCAAACCTTCTCTACCACCTTGTCCCATCTGAT
TCCCTTCTTCCCTGGAGTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGCGGCCACGCCCAAGTG
CCGGTGGAAGAACCGAGGTCTGCAGCGGCGGCGTCCGGATCTTCCTCTTC
ATCTGGACTCCCTGGCGCTAGGTCTTCTGCCACAGCAGCTGCTGGTGGTG
GTGCCGCCGGTGGTGTTGCCCGTAGGTAGGACTGATGGCGCGCGCGTGCC
TGCGGCGACGCTCTTGCGGGCGGCGGCGGCGGCGGTGATGGCGGTGGTAG
TTGGTGGCCGTAGTGGCAGTGGTTTCGCCTCCCGACCAGGCGCCGCTCCG
GTCGTCCCAAGTAAAAAACGAGGGGCCCGACAGAGTGGACAGCTCCTAGG
TGGGACCTGTAGCCCAGCAACAGAGCCCCCGCCCTCTTGAGTCGAAACGC
GTTCTCAGCTTAAGTGCGTCGTGTTTCATGCTTCGGGCTTTGGGGTTTCG
GGGGCGGTAGCGCGTCGTTGGTGTTGTTACCCCTCGCCTCGCGCACGGTA
GCGACAGATGACGGTGGTGTTGAGGGGAGGAGGAGGGGAGGGGAGAGGGC
CGAAGGAGGCGTTGTCGCTGCCCTTGCGCGCTACAGTATCACCCCGAGGT
GGAAACAACAAACCTTCGTCGGCCGACACGGGGTCGCGTAGACCGCTTCG
TGTTTAGGGCTTCGCCGTTCGGGAGGCGCGGGGGAGGGCGCGCCACGGTC
GACTTGCCGCCCCCCGATGGCAGCAATGTGGTAGCTGTGTCGAGAGGGCA
ACGGGCGCCGGGCTTGCTGCACGACTCTTTTCAGCCAGCGCCTTGTAAGA
AGATTCGCCCCCTACGGAAGACGGAGACTCTCTTTTCACCCTTTCGGCTT
TGATTTCATCTTTTGGCTTGGTCTCATCGTTTGGCTTGAGTGGCAATACC
CTCAGGGTCGACGGCGCAGAAGCGTCAGACAGCCTCCTACCCGCGGTCAG
GAAGTGGTTGGTTGGTCTTCCGGTCGTCGGACGTGCTGCAATAACCGTGA
TGAGCAGGATCTACGGTGCGTTCGGGAGGGTACAGTACAAACAGGTTGGG
GCAGGGTGTGCCGGACGCCTAAAAGGCTGGACAATGTAGTGTAGAGGGCG
TTCATCAGTAGCACAATCATGTTGTGAGGAGAGGCTGCGGAACTACAGGT
GGN
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Coding sequence (CDS) from alignment at chr_00:7875115..7884117-

>Ec-00_005170.3 ID=Ec-00_005170.3|Name=Ec-00_005170.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=708bp|location=Sequence derived from alignment at chr_00:7875115..7884117- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTAGCAGGCGGGGAGTGCCCCATTTGTCAGGGCTTGCTTCCAGACGA
GGAAAGGGGTATCCTCAGATGCGTGAGTGCTGCCGCTGTCCCCCGCCCGT
CACCTTCGATTGGAACGATCCTCTCTCCTCCACAGAACCACGTGTTCTGC
TTCAAGTGCATCCACAAGTGGACGAAGACCGAAAGCGCGTGCCCCGTTTG
CCGAGTTGAGGTCAGGTCCATCACCAAGACACTCTCCCTGAGGGAGATCG
AGCAGTTCAACGTTCGCACGCCTATTCCTTTCACCGTGACGAAGGCCGTA
CGGGTGAAGCTTAGGACCCAGATGAAGGAGATGAATCGCCTCCTGGCTGA
CGCTCCGCACCCGCAGTGCCGGTGGAAGAACCGAGGTCTGCAGCGGCGGC
GTCCGGATCTTCCTCTTCATCTGGACTCCCTGGCGCTAGGTCTTCTGCCA
CAGCAGCTGCTGGTGGTGGTGCCGCCGGTGGTGTTGCCCGTAGGTAGGAC
TGATGGCGCGCGCGTGCCTGCGGCGACGCTCTTGCGGGCGGCGGCGGCGG
CGGTGATGGCGGTGGTAGTTGGTGGCCGTAGTGGCAGTGGTTTCGCCTCC
CGACCAGGCGCCGCTCCGGTCGTCCCAAGTAAAAAACGAGGGGCCCGACA
GAGTGGACAGCTCCTAGGTGGGACCTGTAGCCCAGCAACAGAGCCCCCGC
CCTCTTGA
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Synonyms
The feature 'Ec-00_005170.3' has the following synonyms
Synonym
Esi0409_0005
Esi_0409_0005