Ec-00_005040.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005040.1
Unique NameEc-00_005040.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length48
Homology
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BLAST of Ec-00_005040.1 vs. uniprot
Match: D7G078_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G078_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.330e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 MDQAQMDLKRAEYQKHLKDVELDRNMIAKLRAETREARARGTPMNRC 141
            MDQAQMDLKRAEYQKHLKDVELDRNMIAKLRAETREARARGTPMNRC
Sbjct:    1 MDQAQMDLKRAEYQKHLKDVELDRNMIAKLRAETREARARGTPMNRC 47
The following BLAST results are available for this feature:
BLAST of Ec-00_005040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G078_ECTSI1.330e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7475867..7480160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length144
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_005040.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040Ec-00_005040Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7472923..7480160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040.1.3Ec-00_005040.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7475867..7475956 -
Ec-00_005040.1.2Ec-00_005040.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7476441..7476491 -
Ec-00_005040.1.1Ec-00_005040.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7480158..7480160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040.1CDS:Ec-00_005040.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7475867..7475956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040.1Ec-00_005040.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7475867..7480160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005040.1 ID=Ec-00_005040.1|Name=Ec-00_005040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=48bp
MDQAQMDLKRAEYQKHLKDVELDRNMIAKLRAETREARARGTPMNRC*
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spliced messenger RNA

>Ec-00_005040.1 ID=Ec-00_005040.1|Name=Ec-00_005040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=144bp|location=Sequence derived from alignment at chr_00:7475867..7480160- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCAAGCACAGATGGACCTCAAGCGCGCGGAATACCAGAAGCACTT
AAAGGACGTGGAACTCGACCGGAACATGATCGCCAAGCTGAGAGCAGAAA
CGCGGGAGGCCCGAGCGCGAGGTACACCAATGAACAGGTGCTAA
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protein sequence of Ec-00_005040.1

>Ec-00_005040.1 ID=Ec-00_005040.1|Name=Ec-00_005040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=48bp
MDQAQMDLKRAEYQKHLKDVELDRNMIAKLRAETREARARGTPMNRC*
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mRNA from alignment at chr_00:7475867..7480160-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005040.1 ID=Ec-00_005040.1|Name=Ec-00_005040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4294bp|location=Sequence derived from alignment at chr_00:7475867..7480160- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTTGAAGCAAGCATCCCGCACGTGGCATAAACACTTGGTTAGGGGC
ATGACGAGTCTTGGTTTTGAACAGTGTGCTGCCGACGCTTGCGTCATGCG
CTTGATCGAAGCGGGAGTTGTCGCCATGGTCGTTGTCGTCCATGTCGATG
ACATCTTTGCCATCGGGAAGAAGAGTCGGTGTGAGCAATTTGGTAGTGAC
TTGAACGAGTACGTTCCCATCACCAACCTTGGAGAACTTCGCTTGTACGC
TGGTATTCGTTTTTCTCGTGATTTTGCTCAGGGAACCATCACGCTTTCCC
AACAGACGTATTCCACCACCATGGTCGCGAAGTTTGGTGTCACCCGTAAC
AAAGAAACCCCCATGGCCGTTGGCGTGAAGCTTGAGGAGTTTGATGCGTG
TGAACCTGACGTTACAGAGCCGTTTCGCTCTTTGGTGGGGCACTTGATGT
GGCTTGCGAATCAAACTCGGCCGGACATCCTCAACGCCGTCCGTGCCGTT
GCACGGTATTCTTACGCGCCCAAGTCCGTACACTGGAAGGCTGCGTTGCA
TATTGTGATGTACATTAGATTCACGAGTGCGTACGGTATTACATTTCAGC
GGGGTACGGTAGGTGGTGTTAGCTTGGAGGTGTACGTGGACTCGGACTAC
GCTAGCAAAGCGACGGACAGGCGGTCTGTGTCGGGAGGTGTTGTCATGTG
CGCGGGGTCCTGCGTGTCTTTTTTCTCTCGGACTCAGAAGAGCGTCACGC
TGTCTTCTACGGAAGCTGAGTACGCTGCAATGGCCGATGGGATGAAGGAG
GCGATTTTCTTGCGGTATCTCTGGAGTTTTATCTTTCCGGATGGGGATGT
GGGGTGCACTGTTATCAAGGAGGACAATGTCGGGGCGCTTCATTTGGCTA
ATAACCCAGCCACAACCCCCAACTCCAAGCACATTGACATCCGCCACCAT
TCATTTCATTCGTGAGCGTGTTGACCGGGGGGAGTTCAAGGTCGTTTTTG
TTCCGTCGCATTTGCAGCACGCCGACTTTCTTACGAAACCACTACACAAG
GAGGCGTTTTCAGTGCACCGCAACTTTGTCATGAACCTTTGAGGCATTCT
TGGGCTGTTCCTGTCCTGTTAATGTTTGGCGGCATGTCTTTTGGCCAATG
TGTGTTTTTCTTGATGTTGTCTTGATGTTGTTGGGTCACTGCTAGCACTG
CTGTCAAAAATCATGGGGGGGGATGAATGTGATGCTGAGATGCCATGATC
TTCGCCGCAGTACAAGCAGAGTTCTAGCGGACGTTCGGGTTTGATTGTTC
ATTGTGTTCACGTTTTCCGCGTTTTACCTGCGGAGTTTGAGGCAACTTCG
TCCTCAATTCTTGTTTGTTTGCGATTTCGCGTTTACCTGCGGAGTTTGAG
GCAACTTCATGATACTTGTCTGATTCCTCGTTGCTAGGATAAGAAACACA
TTTCTTGTTTATTCGCGATTCCGCGTTTTTCCCGCGGAGTTCGGAGGTAA
CTTCATGATATTCGTTTGATTTCTCGTTGTTTGGATCCGAGAGTTGTTGC
AGCAGGGGGGCTGTTAGCGTTTGTGTTTTGGGAGATGATGCAGCAGGGGG
GCTGTTAAACTTTTATGTTTTGGGCAATGATGCAGCAGGGGGGCTGTCAA
GAAGTCCATGTCTGGATGTTTGAGAAACGGCATAATAATTGGCGAAAGTT
TCCTCTGGCGTCTTTGAACGCCGGGTTTTTAACGTTTGTCTATTTGTGCC
GCATGTATTAGGTATTGATGACTGTTGTTCTGAACGATGTATTGGAGGAA
GGATTTGACATATTTTGGTAAGACATGGTTGAGGCCTATGTGCTTCCGAA
GCTTAGTTCAAATTGGTCAATGAGTTGAAACACAGTTTTGTGCGAGGGTT
TTGTTCGAGGTATTTGTTGACGCGTGTTGCCAGAGTTGTCCGTCCAGAGT
CTTTATGACGTGGCTCTGATGTAATGTTGATCTTTGCTGAGTAATCTTCC
AAGGATAAATCTTTGTGTTTGACTACTTGAGAATGTGGTGACGACATTTT
CTCGAGAGGGGTGCTTGTTAAGACTCTTAGTGAAGTTCCATAGTCGTAGG
AGGAGTGGTAACCTGAAACTTGAATATTCGATAGATCCGGGAGTTGAGAT
GATTTATTTGTGGATACGAAAGATGAATGGTTTTTAGATTTGTTGCCGTT
TTACCTGGCGTTATGTACGGAGGATCTCGTAGATCGTATCTCGTACCGAG
TGGGGGGGCTGTTTATGTGTGTACACGGCAGGATACAATTCTCCGAGATC
TCCGAGGGGGTTACGCAGATGATATAGATATGGGTATGATAGACTTGGTG
CAGCAGGCTTTGCCTCTTCTTGCTCACGTCTGTCACTCGTTAAACTCTCT
AATAATCAAGGAACTTGAGTCACTCCTTTGTGCAACACGCTCTCGACAAG
AGCCCGCGAGCGTGATAACATAGTACACGCGCCGACACCCCAAACAGCTA
TCTATTGTTATTTTTCGTATCCGCCCTTTGCTCCCACTCTCATCACTGCT
CATCGGTGTCTACGACGAGAAGAACGGTGGTAACAAAAACACTCGACCAT
GCTAAGGAAGATGGTGTTGTTACCTTCCTCGAGCACATCCAGAGAACGCG
CGGGCAGTCGATGCCCAACAGCTCCGACACCTACCTGTACATGAAGCACA
AGAAGGTTAGATATAGTAGTTAGTGTAGATAGATAGGTTCACGACGACGA
CGACAGGACAGACGACATCACTGGCATCACTCCCCGACATGCATGTGCAG
GGGTTGGCCTGATGAAGTGGACGTCGTCCCCACTGCCTTATTATTAGTAG
TTTTTTTCGTATCTATCTCCTCTCTCTGTCATCCTCATCATAATATTATT
ATTATTGTCGAGTTCTCGCAATAAACTTCTTCTACTCCCTTGGTGTGTAG
TACCTCTGTTCTTCCACCCCGACCAAGCGACATCATTCCTCAAACAGCAG
CACGACTGACTGCTGCTGCTGCTGTAGGATGCTTGTTGTGGGGTGCTCGC
TCGCGGATGGATGGATGGGTGTCTTCATCTCAATAATAATTAAATCGCTG
CCGCCACCGGCAGCCCAACCCCGCGCTGTCTGTGCTTGAAGTACTGTTGA
TGATATATTATGCGTATATATATATATATAGTTGTTGGTGTTTGTTTGTT
GTTGGTTATTACAATTATTTAGGTTTTAACTATGGCATGCAGCCGCGCAG
GTAGGTACGTATTATCAAATATGAAAATGTGAAATATTTTTATCAAGGTA
GGCACAATTAATTATAGGTATTGTCTTCGTAGGTAGGTAGGTACGTACGC
GTAGCGTCGTATGTATGTATGTATGTATGTTGATGTTGTATGTAGGGACC
CATTTCGTCTGCACTCACTCCCTTTTTTGCCGCAGGACTTGTACCACGAA
TACTGCAGGTACTACAACAACGGGAGGGTCTCCGTGCGCGACGTCGCGGT
GGGCGTGGACGTCATGTTGTGTACCCAGGACTACTTCTACAAGACCTGGG
CGAAGACTTATCCAAACTTGAAGCTCAGAGCAGACGGCGACTTCATGAAG
TGCCAGCTGTGCACCCTGTTCAAGGGCGAGATCTACGGGGGGGGGGCTTC
CGGTGTCACCGGGGTGCAGGACCAAGCACAGATGGACCTCAAGCGCGCGG
AATACCAGAAGCACTTAAAGGTGGGTGCTTCCACCGCGGCAAAGCTAATG
CTTGGCCGCATCGGCCGCCTCCCTGTCTCAGTTGTGCTGTGATTGTTCTC
CGCGATACATACCGTATAGCTCGGACGGGTCGGAGGCAAGGTTACCTATA
CATACATGCATGCATGTATGTTATGATACACTGCCCGTGGTCGACACACG
TACGGACGCGTGCATTTTAAGTACTTTACATCTCGTTTACTGCTGCTACC
CACCCACCTCGTACAAGAACATCATCATCTCCACTGTTGTTCAATGTCAG
TCCCCCCATTATTTGACGGCCGTATGTGTAGTTACGACGGCCCTTGGAAC
TGTTGCTGCCATGTTGTGGCTTTCTGTTGATGATGTATGTTTGTATATAC
TCCGTATGAACGACATACACATAATATATAGACACCCTACCTACTACCTA
AACAGACAGACAGTTTGACAGACAAGGTTTTTCTCTCGCGCGCTGCGTGG
ACAGGACGTGGAACTCGACCGGAACATGATCGCCAAGCTGAGAGCAGAAA
CGCGGGAGGCCCGAGCGCGAGGTACACCAATGAACAGGTGCTAA
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Coding sequence (CDS) from alignment at chr_00:7475867..7480160-

>Ec-00_005040.1 ID=Ec-00_005040.1|Name=Ec-00_005040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=144bp|location=Sequence derived from alignment at chr_00:7475867..7480160- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACCAAGCACAGATGGACCTCAAGCGCGCGGAATACCAGAAGCACTT
AAAGGACGTGGAACTCGACCGGAACATGATCGCCAAGCTGAGAGCAGAAA
CGCGGGAGGCCCGAGCGCGAGGTACACCAATGAACAGGTGCTAA
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Synonyms
The feature 'Ec-00_005040.1' has the following synonyms
Synonym
Esi0396_0023
Esi_0396_0023