Ec-00_004290.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004290.2
Unique NameEc-00_004290.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length103
Homology
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: D7FYH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYH6_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 5.070e-120
Identity = 208/301 (69.10%), Postives = 218/301 (72.43%), Query Frame = 2 
Query:  233 MHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGASGSDSQECADHGRARQSPREVCEGRGQGACS---------GQPGCTNCLM--------------AATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGART----------QEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQRDGGLPNGTGLLSPAREDGTAPDLDSAWHDWISETLVPAVRERVRK 1036
            MHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL  +++  +      +G        GF        G + ++      A+  P     GR    C+           P CTNCLM              AATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGART          QEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQRDGGLPNGTGLLSPAREDGTAPDLDSAWHDWISETLVPAVRER  K
Sbjct:    1 MHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDLVTEVVATSDPEVAFKGADVAVLLGGF----PRLPGMERRDLI----AKNVPIMAEHGRALAKCAKDGVRVLVVANPACTNCLMVTERKISPVLMNDEAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTPLSGDVSLPQQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQRDGGLPNGTGLLSPAREDGTAPDLDSAWHDWISETLVPAVRERGTK 293
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A097IUM0_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.460e-24
Identity = 91/247 (36.84%), Postives = 119/247 (48.18%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGASGSDSQECADHGRARQSPREVCEGRGQGACS----GQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAE--NLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPG-VRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQ 898
            V +TGGAGQIAY+L+PL+  G VFG G +V LRLLDI     AL+G AME+QD         LL      R+     ++   G    R G    D  +   +    +   E  E      C       P  TNC++ A+ APSIPR + S L+RLD DR++ ML    N C    L  T  G  T         R         L GP  +RGV VWGNHS +  PD S  E ++DGRW P+ + ++
Sbjct:    6 VVVTGGAGQIAYSLIPLIARGVVFGPGTRVNLRLLDIPPSAKALEGVAMEVQDSLYSTVLDGLLATTDEARAFDGAQVAILLGGFPRRPGMERGDLID--KNAGIMKRMGEALERHANRNCKVVVVANPAPTNCIVLASHAPSIPRKNISCLSRLDHDRMAGMLLHEANRC----LSGTPHGPPTGXXXXXXXRRP--------LLGPADIRGVCVWGNHSNSQVPDASAVEFRVDGRWTPVSSVIR 238
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A097IUK3_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUK3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.130e-23
Identity = 89/247 (36.03%), Postives = 118/247 (47.77%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRS-RGPTWLSSSEGFR---GCRYGASGSDSQECADHGRARQSPREVCEGRGQGACSG----QPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTAL 895
            V +TGGAGQIAY+L+PL+  G VFG   +V LRLLDI     AL+   MEIQD       + +L      R+  G        GF    G   G      Q  A +    +   ++ E      C       P  TNCL+ A +APS+PR +FS L+RLD +R+  ML E   S       + G  +      HAVR+ +      L    VRG+ +WGNHS +  PD S  E  ++G WVP QT L
Sbjct:    6 VVVTGGAGQIAYSLIPLIARGLVFGPATRVHLRLLDIPPAAQALEAIVMEIQDSLFPTALEGVLGTTDEVRAFEGAQVAILLGGFPRKPGMERG------QLMAKNVGIMKRMGQLLERHASRDCKALVVANPAATNCLVLAANAPSLPRKNFSFLSRLDHERMVGMLLEKANSV-----LAAGTAS------HAVRSER------LRPADVRGLCIWGNHSDSQVPDASSVEFCLNGNWVPAQTIL 229
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A097IUN1_9PHAE (Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUN1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.940e-22
Identity = 83/243 (34.16%), Postives = 111/243 (45.68%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGASGSDSQECADHGRARQSPREVCEGRGQGACS----GQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTAL 895
            V ITGGAGQIAY+L+PL+  G VFG   KV LRLLDI     AL G AME+QD       + +L       +     ++   G    R G    D      +    +   E+ E      C       P  TNC + +  APS+PR + +SL+RLD DR+  ML     S       + G                   + +L    VRG  VWGNHS +  PDVS  E  +DGRWVP+++ +
Sbjct:    6 VVITGGAGQIAYSLIPLIARGLVFGPDVKVHLRLLDIPPAANALAGVAMEVQDSLFSTALEGVLATTNDVEAFTGAQVAILLGGFPRRPGMERWDL--IGKNAGIMKRMGELLETYASPNCKVVVVANPAQTNCYILSIYAPSLPRKNITSLSRLDHDRMIGMLLHEANSRLISASAANGTEC----------------VRRLTAADVRGACVWGNHSNSQVPDVSAVEFFVDGRWVPIESVI 230
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: D7FQW1_ECTSI (Malate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.890e-22
Identity = 84/254 (33.07%), Postives = 114/254 (44.88%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGASGSDSQE-----------CADHGRARQSPREVCEGRGQGACSGQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAE--NLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPG-VRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQ 898
            V +TGGAGQIAY+L+PL+  G VFG   +V LRLLDI     AL+G AME+QD         +L      ++     ++   G    R G    D  E           C +   +R     V            P  TNC++ A+ APSIPR + S L+RLD DR++ ML    N C        +G A+                   Q  GP  VRG+ VWGNHS +  PD S  E +++G W P    ++
Sbjct:   10 VVVTGGAGQIAYSLIPLIARGLVFGPRTRVNLRLLDIPPSASALEGVAMEVQDSLFSTALDGILATTDEAKAFDGAQVAILLGGFPRRPGMERGDLIEKNAGIMKRMGGCLEKHASRNCKVVVVA---------NPAPTNCIVLASYAPSIPRKNISCLSRLDHDRMAGMLLHEANRCLAAAAANGNGSAKG---------------GSWQRLGPADVRGICVWGNHSNSQVPDASAVEFRVNGCWTPAPAVIR 239
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A6A4W597_AMPAM (Malate dehydrogenase n=4 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4W597_AMPAM)

HSP 1 Score: 105 bits (262), Expect = 2.770e-21
Identity = 80/245 (32.65%), Postives = 118/245 (48.16%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQA--IRRWRSRGPTWLSSS----EGFRGCRYGASGSDSQECADHGRARQSPREVCEGRGQGACSGQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTAL 895
            V +TG AGQI Y+L+  L  G VFG  + + L+LLDI  C+ AL G  ME+QDC   L + ++  A  +  ++     +L  +    EG    R     ++ +   + G A     +V +   +    G P  TN L+ +  APSIP+ +FS++ RLDQ+R  A +A                                   L +    VRG  +WGNHS T +PDVS AEA++DGRWVP+  A+
Sbjct:    9 VCVTGAAGQIGYSLLFQLAEGNVFGRDQPLILQLLDITPCLPALNGVVMELQDCALPLIRDVIGTADPLVAFKDIDAAFLVGAMPRREGME--RKDLLAANVKIFKEQGDALD---KVAKKTVKVLVVGNPANTNALICSKYAPSIPKENFSAMTRLDQNRAQAQVAAK---------------------------------LGVPNGSVRGCIIWGNHSSTQFPDVSHAEAEVDGRWVPVPEAV 215
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA)

HSP 1 Score: 106 bits (264), Expect = 4.110e-21
Identity = 86/252 (34.13%), Postives = 115/252 (45.63%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGASGSDSQECADHGRARQSPREVCEGRGQGACSG-------QPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQRDGGL 913
            V +TGGAGQIAY+LVPL+  G VFG G +V LRLLDI     AL+G AME+QD         +L      ++     ++   G    R G    D       G+     + + E   + AC          P  TNCL+ ++ APS+ R + S L+RLD DR+  ML        +   ++GG                 R   +L    VRG  VWGNHS +  PD S  E  IDG WVP  + +   G L
Sbjct:    6 VVVTGGAGQIAYSLVPLIARGLVFGPGVRVHLRLLDIPPAANALEGVAMEVQDSLFSTVLDGVLATTDEAQAFDGAQVAILLGGFPRRPGMERGDLI-----GKNASIMKRMGEALERYACHNCKVVVVANPAPTNCLVLSSHAPSLSRRNISCLSRLDHDRMVGMLLHEANRSLSAPVSAGGGDAGA------------RGWRRLGPADVRGACVWGNHSNSQVPDASAVEFLIDGSWVPAVSVIGDSGWL 240
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A097IUP1_9PHAE (Malate dehydrogenase n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A097IUP1_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.480e-21
Identity = 87/258 (33.72%), Postives = 117/258 (45.35%), Query Frame = 2 
Query:  173 VCVAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGA--SGSDSQECADHGRARQSPREVCEGRGQGA-------CS----GQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAE--NLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPG-VRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQ 898
            V V +TGGAGQIAY+LVPL+  G VFG   KV LRLLDI     AL+G AME+QD        L L  +    +        ++ F G +      G   +   + G        + +  G+         C       P  TNC + A+ APSIPR + S L+RLD DR+  ML    N C          G+        H   +    +  +  GP  +RGV VWGNHS +  PD S  E  +DGRW P  + ++
Sbjct:    7 VQVVVTGGAGQIAYSLVPLIARGLVFGPETKVNLRLLDIPHSATALKGVAMEVQD-------SLFLSVLDGIIAT----TDEAKAFEGAQVAILLGGFPRRPGMERGDLIGKNAGIMKRMGEDLEKYASRDCKVLVVANPAPTNCCVLASHAPSIPRKNISCLSRLDHDRMVGMLLHEANRCLSVATGSNGNGS--------HGGISNGGGSARRRLGPADIRGVCVWGNHSNSQVPDASAVEFLVDGRWTPAASVIR 245
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: A0A097IUJ7_SCYLO (Malate dehydrogenase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A097IUJ7_SCYLO)

HSP 1 Score: 105 bits (263), Expect = 7.490e-21
Identity = 86/255 (33.73%), Postives = 118/255 (46.27%), Query Frame = 2 
Query:  179 VAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGA--SGSDSQECADHGRARQSPREVCEGRGQGA-------CS----GQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAE--NLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQ 898
            V +TGGAGQIAY+L+PL+  G VFG   +V LRLLDI     AL+G AMEIQD        L L  +             ++ F G +      G   +   + G        + +  G+         C       P  TNC++ A+ APSIPR + S L+RLD DR+  ML    N C    L + SG  R    +    V      +  +L    +RGV VWGNHS +  PD S  E  +D RW+P  + ++
Sbjct:    9 VVVTGGAGQIAYSLIPLIARGLVFGTDTRVNLRLLDIPPSATALEGVAMEIQD-------SLFLTVL----DGVVATTDEAKAFEGAQVAILLGGFPRRPGMERGDLIGKNAGIMKRMGEALERYAGRNCKVLVVANPAPTNCIVLASHAPSIPRKNISCLSRLDHDRMVGMLLHEANRC----LGEASGSVRNGTVD---WVSNGGGGSCRRLGPTDIRGVCVWGNHSNSQVPDASAVEFFVDDRWIPAASVIR 245
[Close]
BLAST of Ec-00_004290.2 vs. uniprot
Match: L8HIY2_ACACA (Malate dehydrogenase (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HIY2_ACACA)

HSP 1 Score: 104 bits (259), Expect = 8.070e-21
Identity = 92/301 (30.56%), Postives = 135/301 (44.85%), Query Frame = 2 
Query:  155 LSEQGDVCVAITGGAGQIAYALVPLLMHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL*QKLLLQAIRRWRSRGPTWLSSSEGFRGCRYGASGSD--SQECA---DHGRARQSPR----EVCEGRGQGACSGQPGCTNCLMAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTQEPERQHAVRTRQDRNILQLEGPG-VRGVYVWGNHSPTMWPDVSGAEAKIDGRWVPLQTALQRDGGLPNGTGLLSPAREDGTAPDLDSAWHDWISETLVPAVRER 1027
            +S+Q  V V +TG AGQIAY+LV L+  GR+ GE   ++L LLD+   VGALQG AME++DC   L + ++     +   +G   ++   G    + G   +D  ++  A   + GRA         +VC         G P  TN L+A   APSIP+ +F++L RLDQ+R    LA+ L                     H               PG +    +WGNHS T +PDVS  +  IDGR V L+ A+                   GT         +W+ +  +P V++R
Sbjct:   42 VSQQPPVTVLVTGAAGQIAYSLVFLVAQGRLLGEETPIKLHLLDLPQFVGALQGLAMELEDCAFPLLRGVVCTGDLKEAFKGVD-VALLVGSFPRQAGMERNDLLAKNAAIFKEQGRALDQYASKNVKVC-------VVGNPANTNALIAQACAPSIPKENFTALTRLDQNRAKGFLAKKL---------------------HV-------------SPGQIHNAIIWGNHSSTQFPDVSHGQVSIDGRTVSLKEAV------------------GGT---------EWVEKEFIPGVQQR 273
The following BLAST results are available for this feature:
BLAST of Ec-00_004290.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYH6_ECTSI5.070e-12069.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A097IUM0_9PHAE1.460e-2436.84Malate dehydrogenase n=1 Tax=Punctaria latifolia T... [more]
A0A097IUK3_9PHAE5.130e-2336.03Malate dehydrogenase n=1 Tax=Dictyopteris undulata... [more]
A0A097IUN1_9PHAE2.940e-2234.16Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 ... [more]
D7FQW1_ECTSI3.890e-2233.07Malate dehydrogenase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6A4W597_AMPAM2.770e-2132.65Malate dehydrogenase n=4 Tax=Thoracicalcarea TaxID... [more]
A0A097IUP6_SACJA4.110e-2134.13Malate dehydrogenase n=2 Tax=Saccharina TaxID=3093... [more]
A0A097IUP1_9PHAE6.480e-2133.72Malate dehydrogenase n=1 Tax=Colpomenia sinuosa Ta... [more]
A0A097IUJ7_SCYLO7.490e-2133.73Malate dehydrogenase n=1 Tax=Scytosiphon lomentari... [more]
L8HIY2_ACACA8.070e-2130.56Malate dehydrogenase (Fragment) n=1 Tax=Acanthamoe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5738855..5745529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1648
Hectar predicted targeting categoryother localisation
Gene idEc-00_004290.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004290Ec-00_004290Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5738853..5745529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004290.2Ec-00_004290.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5742053..5743207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004290.2.8Ec-00_004290.2.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5738855..5739272 -
Ec-00_004290.2.7Ec-00_004290.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5739986..5740185 -
Ec-00_004290.2.6Ec-00_004290.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5741891..5742201 -
Ec-00_004290.2.5Ec-00_004290.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5742620..5742760 -
Ec-00_004290.2.4Ec-00_004290.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5743189..5743323 -
Ec-00_004290.2.3Ec-00_004290.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5743602..5743691 -
Ec-00_004290.2.2Ec-00_004290.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5744346..5744601 -
Ec-00_004290.2.1Ec-00_004290.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5745433..5745529 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0042903UTR:Ec-00_004290.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 5738855..5739272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004290.2CDS:Ec-00_004290.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5742053..5742201 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0042905UTR:Ec-00_004290.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 5743208..5743323 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004290.2 ID=Ec-00_004290.2|Name=Ec-00_004290.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=103bp
MHKLSHGRHQRAIHSAQSLQQPRPLGPGSLVGDVGGKPLFRRNSGTDFRG
STYARAGEAARRSHEARQKYPPARGARRSRGVCMGQSQPHHVARRVWSGG
KN*
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spliced messenger RNA

>Ec-00_004290.2 ID=Ec-00_004290.2|Name=Ec-00_004290.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1648bp|location=Sequence derived from alignment at chr_00:5738855..5745529- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACCCGACGACCGTAGTGATGCGGCTGTTCGCGCTCTTTTGGGGGACGGCG
CTTGCGTTTGTGACCCAAGATACTCCTGTCGGTGTCTCCAGTCACAGCTA
CCAACCGACAGCGGCGGTTCACGGCACCTCTTCGAACCCAAGGCGGTCAT
CTCCACTATCTGAACAAGGTGATGTGTGTGTCGCCATTACCGGGGGTGCG
GGTCAAATAGCTTACGCCCTCGTGCCACTCCTCATGCACGGCCGCGTGTT
CGGGGAAGGTCGCAAAGTCAGGCTACGACTTCTAGACATCGAGGCGTGCG
TCGGGGCTCTGCAAGGTTTCGCCATGGAAATTCAAGACTGCAATTCCGAC
CTGGTGACAGAAGTTGTTGCTACAAGCGATCCGGAGGTGGCGTTCAAGGG
GGCCGACGTGGCTGTCCTCCTCGGAGGGTTTCCGCGGCTGCCGGGTATGG
AGCGTCGGGATCTGATAGCCAAGAATGTGCCGATCATGGCCGAGCACGGC
AGAGCCCTCGCGAAGTGTGCGAAGGACGGGGTCAGGGTGCTTGTAGTGGC
CAACCCGGCATGCACAAACTGTCTCATGGCCGCCACCAGCGCGCCATCCA
TTCCGCGCAGTCACTTCAGCAGCCTCGCCCGCTTGGACCAGGATCGCTTG
TCGGCGATGTTGGCGGAAAACCTCTGTTCAGAAGAAACTCTGGAACAGAC
TTCAGGGGGAGCACGTACGCAAGAGCCGGAGAGGCAGCACGCCGTTCGCA
CGAGGCAAGACAGAAATATCCTCCAGCTCGAGGGGCCAGGCGTTCGCGGG
GTGTATGTATGGGGCAATCACAGCCCCACCATGTGGCCCGACGTGTCTGG
AGCGGAGGCAAAAATTGACGGCCGGTGGGTACCGTTGCAGACTGCTCTGC
AACGAGACGGTGGACTTCCAAATGGGACGGGACTGTTGTCTCCTGCTCGT
GAAGATGGTACGGCACCGGACTTGGATTCGGCCTGGCACGATTGGATATC
TGAAACGCTTGTCCCGGCAGTGCGCGAAAGGGGTACGAAAGTGATCGAGG
CCAGAGGGAAATCAAGCGCCCTCTCCGCCGCAAACGCCATCGCAAACCAC
CTCAAGGACTGGTTGCATTCTTCGACAAGTGGGACGCATGCCGGTGTATC
GATGGGCGTGTTTTCAGATGGAAACCCATATGGTGTCCCGGACGACGTTG
TCTTCTCGTTTCCTGTCGAGTGCGGAGAAGGTCGACATCGGATCTTGAAC
GGGTTTCGCCCCGACATGGCAATGCTGGATGAATCTGCGAAGGAACTTCT
TGAAGAGCGGCGAGAAGCACTCGAAACGTTGCGAGAATCGGAAAGACAGG
CTTTGTCGTAGTTCGCTGGAGTTGTGGATGTTCTGTACTTCTCGCCACGT
ACACCCTGTCACGGCAGCTACACAGGAATCGGATACGTACACATTGAGCA
GCTCCAAGGATAGACAGGCCTTGGCTGCAATGAAAATATGACGACGACCT
TGGACGACCGGGAATATAGCTTCGGAACACCCAACAAATGCGAGTGCTCG
CGTTGCTTGTATTGCTACTGAAACAAGTATCAACAGCGTGTCTCTTGCTT
GCCACGTTCAAAAGTGACGAACTGAGCTACTCACGCAAATGTAACGCG
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protein sequence of Ec-00_004290.2

>Ec-00_004290.2 ID=Ec-00_004290.2|Name=Ec-00_004290.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=103bp
MHKLSHGRHQRAIHSAQSLQQPRPLGPGSLVGDVGGKPLFRRNSGTDFRG
STYARAGEAARRSHEARQKYPPARGARRSRGVCMGQSQPHHVARRVWSGG
KN*
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mRNA from alignment at chr_00:5738855..5745529-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004290.2 ID=Ec-00_004290.2|Name=Ec-00_004290.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6675bp|location=Sequence derived from alignment at chr_00:5738855..5745529- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACCCGACGACCGTAGTGATGCGGCTGTTCGCGCTCTTTTGGGGGACGGCG
CTTGCGTTTGTGACCCAAGATACTCCTGTCGGTGTCTCCAGTCACAGGTC
AGCTGCTTATATTTAATGCCTCTCTACATACAGCTTGCAATCTAAGAGGC
AACATGTCAATACCTACAACATACAGCACATCACCTGCTGTAGACTATTT
CAACTATTTCGGTACCGGCACATGGTGTGCCCAGCTGCTGTTGGGTTTTG
GCCATGCATCGTTGTCGCTTTTGTACTCCTCTTTATTGTCTCCGGACGCT
CTCTGACTGTTTGACAGATATTTTTTTGTTGAACGGGCCCACCGGGCCGA
AACATGTGTTGTAAACGAAATAGGTGTGTGTACAGAGGTACTGCTTTAAT
TAAGGAGGCGAAGCCGTGGGCGGTAGCTTGCTCCTAGAGATAGATGAAGG
TTCTGTCGTTGGCACTCTTGTCCACGACCACGTTGAGATGGCAAAGTTGC
TTATTATTGCTGAGAGACGATCAGCAAGGGTCTGAGATGAAGTGGGGATC
CAACTTCATTTCACGGGGTACACAGAGTAGACAATTCTTAGGGGGTAGGG
GTACAAGAAGGAATACCTCCTGACCGACCCACATCCTATCAACAATAAGA
TGTACCCTATTTAATGCTAGCAGCCACACTCCTTAACACTGCTGTATCTT
TCCACACAAGACATTTCTGGCTAGTACTCTCTTGGTGATGCAGTGGGTCC
AGTTCCTACTCAATCCTACCGTTGTCAGCTGATGTGGTACGCTGGCAAGT
TGCCGCCGCCCACGCAGAAGGCATGGGCGCTCCCAACCTCTAGGCTTTCC
AAGATCGAAAACGAAAACAACAGAATGACCCGCAGCACCCCACCTCCGCT
TGCTCTACCTCCCTCCCTATCCGCTAAGCTACCAACCGACAGCGGCGGTT
CACGGCACCTCTTCGAACCCAAGGCGGTCATCTCCACTATCTGAACAAGG
TGATGTGTGTGTCGCCATTACCGGGGGTGCGGGTCAAATAGCTTACGCCC
TCGTGCCACTCCTCATGCACGGCCGCGTGTTCGGGGAAGGTCGCAAAGTC
AGGCTACGACTTCTAGACATCGAGGCGTGCGTCGGGGCTCTGCAAGGTTT
CGCCATGGAAATTCAAGACTGCAATTCCGACCTGGTGGGTTGCTGATTGC
GGGGGAATTCCCCATAGCGTGGTCAGCGTTGGGTCTAGACTCACGAGTCA
GGCCACAGCTCAATTATGCACTTGCCAATGTTTCCCTTTGGGTCTGTCTT
ATTGCGCGTCACATGGCTGAACACATGAACGGAAGAAGGAAATCTGGAGG
GAAGTCCATGTCGCTTCCCTCCAAGTGCTTGGTTTCCACACGGATTCCGT
CGGAGACCGAGCACCGATAGTGCTTCACTTTGGGCGGGCTTGCCATGCAA
TGGCAGCGTTGATGCTTTCATTTGCACCGGAGTGCCGCAACCCTATTCAC
AAGATGTTTGGGGGTTCAAATGTTCGCCACGGGCAAAGGTTTTGCGCTCG
TGCATTGTTTTGCTTCAATCCGTCACTACCTCTCCTGCGAAGGGTCGCCA
CCCATCCCACACTCTTGCCTACCTGTGTTTGTTTCCATAGGGCTTGTTTC
CGCCCACGTTCACGCACGTGCGATCTTTAGGTTATGCATTATGATTTCTG
GATGCGTTTGGCTCTTAAAATCTTATCCGTCAACGTGATATGAGTCTAAT
ATATTTCACGATGGGCAGAAGCATTGTACAATGCAAGAACTATTAGCGCT
GAAGAACGTCCCCTTTCATCAACATTTTGGCCATCTAGGTGACAGAAGTT
GTTGCTACAAGCGATCCGGAGGTGGCGTTCAAGGGGGCCGACGTGGCTGT
CCTCCTCGGAGGGTTTCCGCGGCTGCCGGTGAGACCCTCTAGGAAATTCT
CCCTCGAAAGATCGGTCGGTTGGCAACTAGGTGTACTTTTTGTCGAGTTC
GCCAGTAGAACACAGAATGGTAGATGTAGCAGTGTTCATCCACGCGTGGT
GATCAGATGCGGCTCATGGACCTCAGCTATGAAGCATCTACACGGCTCTC
CTGTTTCCTAAGTTCATTCGAACGCATCGATATGCCTTTGGATCCACCTG
AAGCCAAACGAAACCTCCGCCTACACACCGCGTTCCGTTCCTCTTTCGTT
TCCTAGGGTATGGAGCGTCGGGATCTGATAGCCAAGAATGTGCCGATCAT
GGCCGAGCACGGCAGAGCCCTCGCGAAGTGTGCGAAGGACGGGGTCAGGG
TGCTTGTAGTGGCCAACCCGGCATGCACAAACTGTCTCATGGTGACTGAG
AGGAAGATTTCGCCAGTTCTCATGAACGACGAAGCGTGTTGTGAATTAAT
TCAATCCCGTTGTTTGCGCACGCCTTGTTTATCATGCGGACCTTGTGTGC
CGTGCTTGTACCCGCTTGACGCCGCTTCGTGCGGTAGCTGGAGACCTTCG
AGTGCTTATCCCATCAAGGACTATTTGGCATTTTCCTTTTTTGCGCATGC
ACTGTTCACTTAGCATGTGCGGTGGTTGTGCGTTTAGCAAGTGCAATGGC
TGCTCGTGTAGTCGGTGCTTGCTTGATGAGCTCTGCCCTAGCACAGCTGG
TGATTGGAACTATCGTCGGGGAGACTAGTATCAACAAGGTCAGATCCCAA
CTGATTCTGACCCCAAGCAACCCTGGAAAGACTCCAACCTTCTCACTACT
ACCATTTTCGACGTGGCAGGCCGCCACCAGCGCGCCATCCATTCCGCGCA
GTCACTTCAGCAGCCTCGCCCGCTTGGACCAGGATCGCTTGTCGGCGATG
TTGGCGGAAAACCTCTGTTCAGAAGAAACTCTGGAACAGACTTCAGGGGG
AGCACGTACGGTACGTCTTGCCTTGATGTTTGTATGAAGGTTGTGTATTC
TGCCGTTGAACACCGTGGTTTCCACACCCTTCACACAATTTTCAGCTAGT
GCTGCTCCTGACTATGTTTGATTGAATCGACTAATATCGCTCCGTGTCGA
TGCTTGTTGTGTATACACCTCGAGGGACCCCCCGGACTTGGTTTCTTCAT
TGATACGTTCGTACGCTCCGGTGACTGATGCTTCCTCTAATGTTATACGA
TGTCTTGGGTATGGGCTATTGTGCATACTGCAGATAACGGGTTGTGAGGA
GAGCTTGTCAATATTGCCTATTGATGATGGAACTCCCCGCTACGAACAGC
GCTCTGACTCCACAACGTGCGAACTTGACCCGTTTGCCTGACCTATAGCC
GCTGTCCGGGGATGTCTCGCTCCCACAGCAAGAGCCGGAGAGGCAGCACG
CCGTTCGCACGAGGCAAGACAGAAATATCCTCCAGCTCGAGGGGCCAGGC
GTTCGCGGGGTGTATGTATGGGGCAATCACAGCCCCACCATGTGGCCCGA
CGTGTCTGGAGCGGAGGCAAAAATTGACGGCCGGTGGGTACCGTTGCAGA
CTGCTCTGCAACGAGACGGTGGACTTCCAAATGGGACGGGACTGTTGTCT
CCTGCTCGTGAAGATGGTACGGCACCGGACTTGGATTCGGCCTGGCACGA
TTGGATATCTGAAACGCTTGTCCCGGCAGTGCGCGAAAGGTGGGTTGGAA
GCTACGGTGACGACGAAAATCGTCACGCGGTCATTGCAAACTCACCTGTT
CTTGCTAATATTTGAAAACTCAGGTCTTCAGCCCAATCGTTTGACGTCGG
CGCGTTCGCGTCCAATGTGCCGGGGTCGTTCAACCGGCGCTTCAGGCGCC
CCATCGCTCCTCACACGCCGTTTTTTATGGGAGCATAAAGTTGCGAGAAA
AGTTGTGGTTTGCGAACATTTCTCGCAACTGTTGTTATGTACGATCTTTA
TGGGAGCAAAAAGTTGCGCTTAAAGTTTGAATTTTTTTCTCCACCAATCC
ACGTCAAGTACCTGCCCCTACCACACACGTAGATCCTCTCCCGCCACACA
CACGCGCACGATCCACGCGATAGATGAACGACCAAGTCAGAATACTTCAA
CGACGAGTTGGAGTTTATGGCCTACGATGGCCGCAGCTATGTGGAATACG
TATATGTATCCATAGAGTCTGCGTCAAACATTATTTGTTTTTGGTGTGAG
CATGAATGAGGTCTTCCTGGCTTCAAATGGAAGGCACAACGCCAGGTTTT
GTGCCACCAGCTCGTTTTCCAAATCGTCGTTCCAAGCTCTGGCCGGTTTC
TCGGGGTGGTACGAAGGGGTATGCCTGCTTCTCGCCGTTGCTCAATAAAC
AAAAAACGATCACGCCTCCGCGTTCCACCAGTCACGTGAAGAAACTTCCT
TCGCCCCATAGTGAGCGTGCAATAAAAGTGTTTTTGACAAAAGTTCCCGA
CCAAAACTTGCAAACAAACTTTTCCTTTTCTCGCAACTTCACGCTCCCAT
AAAAAGCAGTGTAAATAGATGAGAATAAAAGGGTGTGTGCCAAAACCCCG
TGGGCGCCCTCGTAGTGAACAGGGGTTCAAGAGTCTTTTCCATCACCCTA
CCTTGCTTTCGTTTAACCCGAAGGACTGTGTACGAGAATACGGTTGTAGC
CGAAGTATGAAAATATTTTAGCAGTACACCTTCATGCCGCATGTGGACCT
GTAAATGTTTCTCTTGACCAAGAATAGTCTTACTTCGAAGTAGATAAGAT
AAGATCATTGTGCTCTCAGGCGCTGCCAACGGAAGATTTCTCTTCGTATC
GCCATCGTCCATAACTCGCAGCATATTTCCCCCGCTCTGCGGTGCTCACC
CACACGGAGCAACAACTTTCCCCACGGAAAGGCCTGGATACGTATGTTTC
GTTTCTTGACAGGTCGTGCTCCTTCCCACGAATTTCCAGCGTCGTTTTCT
TGTTCTTCGTCGCATCATCCGTCTATGTGACCCTCAGCCATTGGCAAGTT
CAGCGCCTCTGTACCCTGCACAGCATAGCAAAAGTGTGTCTCACGCGTTT
TGAGGGGCCCCCAGGGATACCCACCAAAAACGGCGAGATTGGTGATGCGT
TGTCAGCGCCATCACTTGCAACTGCGTGGGTGATTCTGTCAATGGGGGAT
GGGGGGTGGCACCAATAATGTTTGAAGCAATCGCTCGAGTTGGTCACAAT
CCTGGAGTGTCTATGCGTAAGATGTTTTCATAAGCGGCTGTTGCGCCGCT
TCTTGGACTAACGTCCTTCTCTGCTCCTAGAGGCGACGGTTGTCATTACA
TTTGAGTAGTATTGGCGGCCGTTCACTGTGCTCATCCTCTTCGGTTTGAT
CAACGCACACGCCCTTCTTTCGTGACACACGACCGCAAATCCAGGGGTAC
GAAAGTGATCGAGGCCAGAGGGAAATCAAGCGCCCTCTCCGCCGCAAACG
CCATCGCAAACCACCTCAAGGACTGGTTGCATTCTTCGACAAGTGGGACG
CATGCCGGTGTATCGATGGGCGTGTTTTCAGATGGAAACCCATATGGTGT
CCCGGACGACGTTGTCTTCTCGTTTCCTGTCGAGTGCGGAGAAGGTATGC
ATATATGGCAGTGATGGCTGCAAAAAGAGATGTGACGTCATGACCGTGGA
TGACTTCATCGGTCGGAAATTTCGGTCGAAGGATTATTCCTTTAAAAAAT
ATTGGGCAATCAGAAAACTGCGGGCACCTTTTATTCGAAAGTTGTTCATT
CGTTCATGTGACGCTCTAGTCAAGTGTAGGCAAGTATTCACGATTTACGG
AAGGGGCAAGAGTATGTTTGGTGCACACGCACGGCTGCAGTTCAACAGCA
TCACTTTTGGTTTGAAGAAGTTACATGTTGTGACTGCATTACATCACTAT
CCTATCGCGCACGGAGTGCAGTTGACCAACCTTGCATGGTGCCAAGTAAC
GTTGACCAATTTTTCATCTCGAGTTTTGCATTGATAAGACGTTCACATGG
TGGCCTGACTTGCCGCCACCTTGTATTTTCTTCCTTGCCTTTCGCGCTAC
CACTCGTCTCGCCAAGACGTATCGTTTGGTGTACAACATACCTCCATTGA
CCCCAGGGATAATGGCGTGTCATCTCCTGAAACCTTATAGATACTTTCTC
GCACAGGATGCTAATTGAAACCTTGTGCACCTTTAACGTGGAGATGACTG
GGAATCTGTCCGTGTGTATCAACGCGTTCTGACGTACCTTGAGATTTTTT
CCCTCTCCCATCCATGTTGTGTGGCTTTTACTGCCCAACGGCAACCTCAA
TCGCCAGGTCGACATCGGATCTTGAACGGGTTTCGCCCCGACATGGCAAT
GCTGGATGAATCTGCGAAGGAACTTCTTGAAGAGCGGCGAGAAGCACTCG
AAACGTTGCGAGAATCGGAAAGACAGGCTTTGTCGTAGTTCGCTGGAGTT
GTGGATGTTCTGTACTTCTCGCCACGTACACCCTGTCACGGCAGCTACAC
AGGAATCGGATACGTACACATTGAGCAGCTCCAAGGATAGACAGGCCTTG
GCTGCAATGAAAATATGACGACGACCTTGGACGACCGGGAATATAGCTTC
GGAACACCCAACAAATGCGAGTGCTCGCGTTGCTTGTATTGCTACTGAAA
CAAGTATCAACAGCGTGTCTCTTGCTTGCCACGTTCAAAAGTGACGAACT
GAGCTACTCACGCAAATGTAACGCG
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Coding sequence (CDS) from alignment at chr_00:5738855..5745529-

>Ec-00_004290.2 ID=Ec-00_004290.2|Name=Ec-00_004290.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=309bp|location=Sequence derived from alignment at chr_00:5738855..5745529- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACAAACTGTCTCATGGCCGCCACCAGCGCGCCATCCATTCCGCGCA
GTCACTTCAGCAGCCTCGCCCGCTTGGACCAGGATCGCTTGTCGGCGATG
TTGGCGGAAAACCTCTGTTCAGAAGAAACTCTGGAACAGACTTCAGGGGG
AGCACGTACGCAAGAGCCGGAGAGGCAGCACGCCGTTCGCACGAGGCAAG
ACAGAAATATCCTCCAGCTCGAGGGGCCAGGCGTTCGCGGGGTGTATGTA
TGGGGCAATCACAGCCCCACCATGTGGCCCGACGTGTCTGGAGCGGAGGC
AAAAATTGA
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Synonyms
The feature 'Ec-00_004290.2' has the following synonyms
Synonym
Esi0344_0024
Esi_0344_0024