Ec-00_004260.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004260.1
Unique NameEc-00_004260.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length91
Homology
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BLAST of Ec-00_004260.1 vs. uniprot
Match: D7FYH4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH4_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.500e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR
Sbjct:    1 MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 90
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BLAST of Ec-00_004260.1 vs. uniprot
Match: D7FYH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.050e-50
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            M GVEGVLALVREGGDMSKRFEHYCK NLCLESWDFL+D  LYEMMD T ADEQFM FTMISDRYLLATSPDEVNI+ AT KH+AAFRTR
Sbjct:    1 MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 90
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BLAST of Ec-00_004260.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.470e-23
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   10 VEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            V+GV AL  +GGDM+ RF  + + NLC+ESWDF++DA  YEM  + + D+QF  F ++ ++YLL TSPDEVNISS  SK +A+F+TR
Sbjct:  278 VDGVYALAVKGGDMADRFGRFVQENLCMESWDFILDAVKYEMESSCEPDDQFDEFLILLNQYLLPTSPDEVNISSKMSKRMASFKTR 364
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BLAST of Ec-00_004260.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.140e-21
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   10 VEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDA-----DEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            V+GV+ L   GG+M+++F  +C+ NLC+ESWDFLVD   YE M  +       DEQF  F  I + YLL TSPDE+NISSA  K +A FRTR
Sbjct:  194 VDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285
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BLAST of Ec-00_004260.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.720e-20
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   16 GVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMD----ATDA-DEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            GVL L   GG+++++F  +C+ NLC+ESWDFLVD   YE +     A D  DEQF +F  I ++YLL TSPDE+NISS+ S  + AF TR
Sbjct:   33 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLIANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 122
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BLAST of Ec-00_004260.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.150e-19
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   16 GVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMD----ATDA-DEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            GVL L   GG+++++F  +C+ NLC+ESWDFLVD   YE +     A D  DEQF +F  I ++YLL TSPDE+NISS+ S  + AF TR
Sbjct:   96 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 185
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BLAST of Ec-00_004260.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.150e-14
Identity = 45/124 (36.29%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:   10 VEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDA-------------------------------------DEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            V+GV+ L    G+M+++F  +C+ NLC+ESWD LVD   YE M  + +                                     DEQ   F  I + YLL TSPDE+NISSA  K +A FRTR
Sbjct:  320 VDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERMVPSPSNIFCRVGFDTRWSCLWNFSHPNGLTWFVRFADRENPEDEQLKCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 443
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BLAST of Ec-00_004260.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.820e-7
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  124 LYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 270
            L  MM + +  EQF +F  I ++YLL TSPDE+NISSA SKH+A FRTR
Sbjct:  154 LLPMMSSPE--EQFNSFLYILNQYLLPTSPDEINISSAMSKHMATFRTR 200
The following BLAST results are available for this feature:
BLAST of Ec-00_004260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYH4_ECTSI2.500e-58100.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYH3_ECTSI3.050e-5086.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0L8_9PHAE6.470e-2354.02RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5R8_9PHAE1.140e-2152.17RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQW8_ECTSI9.720e-2051.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI3.150e-1951.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE83_9PHAE3.150e-1436.29RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY9_ECTSI5.820e-759.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5696890..5697303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length273
Hectar predicted targeting categoryother localisation
Gene idEc-00_004260.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004260Ec-00_004260Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5696890..5697303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004260.1.1Ec-00_004260.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5696890..5697027 +
Ec-00_004260.1.2Ec-00_004260.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5697169..5697303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004260.1CDS:Ec-00_004260.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5696890..5697027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004260.1Ec-00_004260.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5696890..5697303 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004260.1 ID=Ec-00_004260.1|Name=Ec-00_004260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=91bp
MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATD
ADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR*
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spliced messenger RNA

>Ec-00_004260.1 ID=Ec-00_004260.1|Name=Ec-00_004260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=273bp|location=Sequence derived from alignment at chr_00:5696890..5697303+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGCGTGGAAGGCGTGCTGGCGCTCGTGCGCGAAGGCGGAGATAT
GAGCAAGCGGTTCGAACACTATTGCAAGACAAACCTATGCCTGGAAAGCT
GGGACTTTCTCGTAGATGCGACCCTCTACGAGATGATGGACGCCACTGAC
GCAGACGAGCAGTTCATGACCTTTACAATGATCTCAGACCGGTACTTGCT
GGCCACATCTCCAGATGAGGTCAATATCTCTAGCGCCACCAGCAAGCACG
TGGCTGCTTTCAGAACAAGGTAG
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protein sequence of Ec-00_004260.1

>Ec-00_004260.1 ID=Ec-00_004260.1|Name=Ec-00_004260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=91bp
MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATD
ADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR*
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mRNA from alignment at chr_00:5696890..5697303+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004260.1 ID=Ec-00_004260.1|Name=Ec-00_004260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=414bp|location=Sequence derived from alignment at chr_00:5696890..5697303+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGGCGTGGAAGGCGTGCTGGCGCTCGTGCGCGAAGGCGGAGATAT
GAGCAAGCGGTTCGAACACTATTGCAAGACAAACCTATGCCTGGAAAGCT
GGGACTTTCTCGTAGATGCGACCCTCTACGAGATGATGGTGAGCACCTGC
TGAGTGTTCGTTGTTTGGACATGACTGATGTGCTGGTTCAGATGCCTGTG
ATGCGCACAACATCCACATCAAATCACAGTATTGGCCGACTCACTAAACA
CTGTGTTCGCCTTCTGGTTTGTGCTTCAGGACGCCACTGACGCAGACGAG
CAGTTCATGACCTTTACAATGATCTCAGACCGGTACTTGCTGGCCACATC
TCCAGATGAGGTCAATATCTCTAGCGCCACCAGCAAGCACGTGGCTGCTT
TCAGAACAAGGTAG
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Coding sequence (CDS) from alignment at chr_00:5696890..5697303+

>Ec-00_004260.1 ID=Ec-00_004260.1|Name=Ec-00_004260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=273bp|location=Sequence derived from alignment at chr_00:5696890..5697303+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGGCGTGGAAGGCGTGCTGGCGCTCGTGCGCGAAGGCGGAGATAT
GAGCAAGCGGTTCGAACACTATTGCAAGACAAACCTATGCCTGGAAAGCT
GGGACTTTCTCGTAGATGCGACCCTCTACGAGATGATGGACGCCACTGAC
GCAGACGAGCAGTTCATGACCTTTACAATGATCTCAGACCGGTACTTGCT
GGCCACATCTCCAGATGAGGTCAATATCTCTAGCGCCACCAGCAAGCACG
TGGCTGCTTTCAGAACAAGGTAG
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Synonyms
The feature 'Ec-00_004260.1' has the following synonyms
Synonym
Esi0344_0016
Esi_0344_0016