Ec-00_004240.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004240.1
Unique NameEc-00_004240.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length91
Homology
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BLAST of Ec-00_004240.1 vs. uniprot
Match: D7FYH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH3_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 2.590e-60
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 270
            MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR
Sbjct:    1 MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 90
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BLAST of Ec-00_004240.1 vs. uniprot
Match: D7FYH4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 7.490e-51
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 270
            M GVEGVLALVREGGDMSKRFEHYCK NLCLESWDFL+D  LYEMMD T ADEQFM FTMISDRYLLATSPDEVNI+ AT KH+AAFRTR
Sbjct:    1 MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 90
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BLAST of Ec-00_004240.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.210e-21
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   10 VEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 270
            V+GV AL  +GGDM+ RF  + + NLC+ESWDF++D   YEM  +   D+QF  F ++ ++YLL TSPDEVNI+    K MA+F+TR
Sbjct:  278 VDGVYALAVKGGDMADRFGRFVQENLCMESWDFILDAVKYEMESSCEPDDQFDEFLILLNQYLLPTSPDEVNISSKMSKRMASFKTR 364
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BLAST of Ec-00_004240.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.260e-20
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   10 VEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHA-----DEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 270
            V+GV+ L   GG+M+++F  +C+ NLC+ESWDFL+D   YE M  +       DEQF  F  I + YLL TSPDE+NI+ A  K +A FRTR
Sbjct:  194 VDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285
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BLAST of Ec-00_004240.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-17
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:   16 GVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYE-----MMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 270
            GVL L   GG+++++F  +C+ NLC+ESWDFL+D   YE     ++     DEQF +F  I ++YLL TSPDE+NI+ +    + AF TR
Sbjct:   33 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLIANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 122
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BLAST of Ec-00_004240.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.520e-17
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:   16 GVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYE-----MMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 270
            GVL L   GG+++++F  +C+ NLC+ESWDFL+D   YE     ++     DEQF +F  I ++YLL TSPDE+NI+ +    + AF TR
Sbjct:   96 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 185
[Close]
BLAST of Ec-00_004240.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.800e-5
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   10 VEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMM 138
            V+GV+ L    G+M+++F  +C+ NLC+ESWD L+D   YE M
Sbjct:  320 VDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERM 362
The following BLAST results are available for this feature:
BLAST of Ec-00_004240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FYH3_ECTSI2.590e-60100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYH4_ECTSI7.490e-5186.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L0L8_9PHAE2.210e-2150.57RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5R8_9PHAE2.260e-2048.91RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQW8_ECTSI1.180e-1744.44RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI3.520e-1744.44RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE83_9PHAE3.800e-546.51RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5660691..5661099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length273
Hectar predicted targeting categoryother localisation
Gene idEc-00_004240.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004240Ec-00_004240Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5660691..5661099 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004240.1.1Ec-00_004240.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5660691..5660828 +
Ec-00_004240.1.2Ec-00_004240.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5660965..5661099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004240.1CDS:Ec-00_004240.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5660691..5660828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004240.1Ec-00_004240.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5660691..5661099 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004240.1 ID=Ec-00_004240.1|Name=Ec-00_004240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=91bp
MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTH
ADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR*
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spliced messenger RNA

>Ec-00_004240.1 ID=Ec-00_004240.1|Name=Ec-00_004240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=273bp|location=Sequence derived from alignment at chr_00:5660691..5661099+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGGTGTGGAAGGCGTGCTGGCGCTCGTGCGCGAAGGCGGAGATAT
GAGCAAGCGCTTCGAACATTACTGCAAGATGAACCTATGCCTGGAAAGCT
GGGACTTTCTTATAGATAGGGCCCTCTACGAGATGATGGACACCACTCAC
GCAGACGAGCAGTTCATGGCCTTTACCATGATCTCAGACCGGTACTTGCT
GGCCACATCTCCAGATGAGGTCAACATCGCCGGGGCCACCAGGAAGCACA
TGGCTGCTTTCAGAACAAGGTAG
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protein sequence of Ec-00_004240.1

>Ec-00_004240.1 ID=Ec-00_004240.1|Name=Ec-00_004240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=91bp
MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTH
ADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR*
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mRNA from alignment at chr_00:5660691..5661099+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004240.1 ID=Ec-00_004240.1|Name=Ec-00_004240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=409bp|location=Sequence derived from alignment at chr_00:5660691..5661099+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGGTGTGGAAGGCGTGCTGGCGCTCGTGCGCGAAGGCGGAGATAT
GAGCAAGCGCTTCGAACATTACTGCAAGATGAACCTATGCCTGGAAAGCT
GGGACTTTCTTATAGATAGGGCCCTCTACGAGATGATGGTGAGAGCCTGC
TAAGTATTCTTTGTTTGGACATCACTGATGTTCTGGATCACATGCTTGTG
ATGCACACGACATCCAATACTGTGATTGAATCGGCCAACTCACTGCTGTG
TTCGCCTTGTATTTTGTGCTTCAGGACACCACTCACGCAGACGAGCAGTT
CATGGCCTTTACCATGATCTCAGACCGGTACTTGCTGGCCACATCTCCAG
ATGAGGTCAACATCGCCGGGGCCACCAGGAAGCACATGGCTGCTTTCAGA
ACAAGGTAG
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Coding sequence (CDS) from alignment at chr_00:5660691..5661099+

>Ec-00_004240.1 ID=Ec-00_004240.1|Name=Ec-00_004240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=273bp|location=Sequence derived from alignment at chr_00:5660691..5661099+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGGTGTGGAAGGCGTGCTGGCGCTCGTGCGCGAAGGCGGAGATAT
GAGCAAGCGCTTCGAACATTACTGCAAGATGAACCTATGCCTGGAAAGCT
GGGACTTTCTTATAGATAGGGCCCTCTACGAGATGATGGACACCACTCAC
GCAGACGAGCAGTTCATGGCCTTTACCATGATCTCAGACCGGTACTTGCT
GGCCACATCTCCAGATGAGGTCAACATCGCCGGGGCCACCAGGAAGCACA
TGGCTGCTTTCAGAACAAGGTAG
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Synonyms
The feature 'Ec-00_004240.1' has the following synonyms
Synonym
Esi0344_0009
Esi_0344_0009