Ec-00_004230.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004230.1
Unique NameEc-00_004230.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length61
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_004230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5629646..5630043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length183
Hectar predicted targeting categoryother localisation
Gene idEc-00_004230.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004230Ec-00_004230Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5628852..5630043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004230.1.2Ec-00_004230.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5629646..5629655 -
Ec-00_004230.1.1Ec-00_004230.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5629871..5630043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004230.1CDS:Ec-00_004230.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5629646..5629655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004230.1Ec-00_004230.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5629646..5630043 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004230.1 ID=Ec-00_004230.1|Name=Ec-00_004230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=61bp
MYGTSREWVGTESMRKRAPIDGENRLQDLRGARLADGHTIRAAGSKRKKK
HAYAHAARQA*
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spliced messenger RNA

>Ec-00_004230.1 ID=Ec-00_004230.1|Name=Ec-00_004230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=183bp|location=Sequence derived from alignment at chr_00:5629646..5630043- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGGGACGTCGCGAGAATGGGTGGGGACGGAAAGCATGCGTAAAAG
GGCCCCAATAGATGGCGAGAACAGGCTTCAAGACCTTAGGGGCGCAAGGC
TCGCCGACGGACATACTATTCGGGCAGCAGGGTCGAAGAGGAAGAAGAAG
CATGCGTATGCCCATGCGGCAAGGCAGGCCTAG
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protein sequence of Ec-00_004230.1

>Ec-00_004230.1 ID=Ec-00_004230.1|Name=Ec-00_004230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=61bp
MYGTSREWVGTESMRKRAPIDGENRLQDLRGARLADGHTIRAAGSKRKKK
HAYAHAARQA*
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mRNA from alignment at chr_00:5629646..5630043-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004230.1 ID=Ec-00_004230.1|Name=Ec-00_004230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=398bp|location=Sequence derived from alignment at chr_00:5629646..5630043- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACGGGACGTCGCGAGAATGGGTGGGGACGGAAAGCATGCGTAAAAG
GGCCCCAATAGATGGCGAGAACAGGCTTCAAGACCTTAGGGGCGCAAGGC
TCGCCGACGGACATACTATTCGGGCAGCAGGGTCGAAGAGGAAGAAGAAG
CATGCGTATGCCCATGCGGCAAGGTCGGAAAGAATACAACTCGTCTTTGG
CATATCAAGGCTGAAACGGAGAGGGGGAATGGAACTCGTGTAGCGGAAAA
GCACTTTAACTGTTTTTGTCTCTACTGGTTGTCTACCAGAAAAGCGTCTC
CCGCGGCGTGAGCCCAACAATCGGACCGGGTCCCCCGCCACTCCTGTTTT
ACGGAAACGCTTTTCGCGCTGTTGCGCTGGGCACGCAGGCAGGCCTAG
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Coding sequence (CDS) from alignment at chr_00:5629646..5630043-

>Ec-00_004230.1 ID=Ec-00_004230.1|Name=Ec-00_004230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=183bp|location=Sequence derived from alignment at chr_00:5629646..5630043- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACGGGACGTCGCGAGAATGGGTGGGGACGGAAAGCATGCGTAAAAG
GGCCCCAATAGATGGCGAGAACAGGCTTCAAGACCTTAGGGGCGCAAGGC
TCGCCGACGGACATACTATTCGGGCAGCAGGGTCGAAGAGGAAGAAGAAG
CATGCGTATGCCCATGCGGCAAGGCAGGCCTAG
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Synonyms
The feature 'Ec-00_004230.1' has the following synonyms
Synonym
Esi344_0043
Esi_344_0043