Ec-00_004210.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004210.1
Unique NameEc-00_004210.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length209
Homology
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BLAST of Ec-00_004210.1 vs. uniprot
Match: D7FXZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ2_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 4.680e-115
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 
Query:    1 MTMENRASQARYNKLVQKADVKELTRSHDAAKARADAVRVQRNKANATKREAEKLAAAANVEASKQRELRLGAAQAAAAEHESRVRTEKKLEKERQQVQRLTEKLSVLALEKRKLDAKYRQTVKDAGLHAPAGXXXXXXXXXATSPALSLRKQVIRDSMARGQRKRELASMAALVNANAILRKQGKRQKERITVLREEAKSALRPSPQ 624
            MTMENRASQARYNKLVQKADVKELTRSHDAAKARADAVRVQRNKANATKREAEKLAAAANVEASKQRELRLGAAQAAAAEHESRVRTEKKLEKERQQVQRLTEKLSVLALEKRKLDAKYRQTVKDAGLHAPAGXXXXXXXXXATSPALSLRKQVIRDSMARGQRKRELASMAALVNANAILRKQGKRQKERITVLREEAKSALRPSPQ
Sbjct:    1 MTMENRASQARYNKLVQKADVKELTRSHDAAKARADAVRVQRNKANATKREAEKLAAAANVEASKQRELRLGAAQAAAAEHESRVRTEKKLEKERQQVQRLTEKLSVLALEKRKLDAKYRQTVKDAGLHAPAGXXXXXXXXXATSPALSLRKQVIRDSMARGQRKRELASMAALVNANAILRKQGKRQKERITVLREEAKSALRPSPQ 208
The following BLAST results are available for this feature:
BLAST of Ec-00_004210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXZ2_ECTSI4.680e-115100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5572211..5573030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length627
Hectar predicted targeting categoryother localisation
Gene idEc-00_004210.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004210Ec-00_004210Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5556323..5573030 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004210.1.2Ec-00_004210.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5572211..5572285 -
Ec-00_004210.1.1Ec-00_004210.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5572479..5573030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004210.1CDS:Ec-00_004210.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5572211..5572285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004210.1Ec-00_004210.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5572211..5573030 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004210.1 ID=Ec-00_004210.1|Name=Ec-00_004210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=209bp
MTMENRASQARYNKLVQKADVKELTRSHDAAKARADAVRVQRNKANATKR
EAEKLAAAANVEASKQRELRLGAAQAAAAEHESRVRTEKKLEKERQQVQR
LTEKLSVLALEKRKLDAKYRQTVKDAGLHAPAGGGGGGGGGAATSPALSL
RKQVIRDSMARGQRKRELASMAALVNANAILRKQGKRQKERITVLREEAK
SALRPSPQ*
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spliced messenger RNA

>Ec-00_004210.1 ID=Ec-00_004210.1|Name=Ec-00_004210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=627bp|location=Sequence derived from alignment at chr_00:5572211..5573030- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATGGAAAATAGAGCGTCGCAAGCCAGGTACAACAAGCTCGTGCA
GAAAGCAGACGTCAAGGAGTTGACACGGAGCCACGACGCCGCAAAAGCGA
GAGCTGATGCCGTCCGCGTACAAAGGAACAAGGCGAATGCGACAAAGAGA
GAGGCGGAAAAACTAGCAGCAGCAGCAAACGTTGAAGCAAGCAAGCAACG
AGAGCTACGCCTGGGAGCAGCACAAGCGGCAGCGGCTGAGCACGAGAGCC
GAGTGAGGACGGAGAAGAAGCTGGAGAAGGAGCGCCAGCAAGTGCAGCGC
TTGACGGAGAAGCTGTCGGTGTTGGCGCTGGAGAAGCGCAAGCTGGATGC
GAAATATCGACAGACAGTAAAGGACGCTGGTCTCCACGCTCCTGCTGGTG
GTGGTGGGGGTGGTGGTGGTGGTGCTGCTACTTCTCCCGCGCTTTCTCTT
CGGAAGCAGGTCATCCGAGACTCGATGGCGAGAGGCCAGAGGAAGAGAGA
ACTGGCTTCAATGGCCGCGCTGGTGAACGCCAACGCAATTTTGAGGAAGC
AGGGCAAACGTCAGAAAGAGAGGATCACCGTGCTCCGCGAGGAGGCAAAG
AGTGCTCTGAGGCCCTCGCCGCAATGA
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protein sequence of Ec-00_004210.1

>Ec-00_004210.1 ID=Ec-00_004210.1|Name=Ec-00_004210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=209bp
MTMENRASQARYNKLVQKADVKELTRSHDAAKARADAVRVQRNKANATKR
EAEKLAAAANVEASKQRELRLGAAQAAAAEHESRVRTEKKLEKERQQVQR
LTEKLSVLALEKRKLDAKYRQTVKDAGLHAPAGGGGGGGGGAATSPALSL
RKQVIRDSMARGQRKRELASMAALVNANAILRKQGKRQKERITVLREEAK
SALRPSPQ*
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mRNA from alignment at chr_00:5572211..5573030-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004210.1 ID=Ec-00_004210.1|Name=Ec-00_004210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=820bp|location=Sequence derived from alignment at chr_00:5572211..5573030- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGATGGAAAATAGAGCGTCGCAAGCCAGGTACAACAAGCTCGTGCA
GAAAGCAGACGTCAAGGAGTTGACACGGAGCCACGACGCCGCAAAAGCGA
GAGCTGATGCCGTCCGCGTACAAAGGAACAAGGCGAATGCGACAAAGAGA
GAGGCGGAAAAACTAGCAGCAGCAGCAAACGTTGAAGCAAGCAAGCAACG
AGAGCTACGCCTGGGAGCAGCACAAGCGGCAGCGGCTGAGCACGAGAGCC
GAGTGAGGACGGAGAAGAAGCTGGAGAAGGAGCGCCAGCAAGTGCAGCGC
TTGACGGAGAAGCTGTCGGTGTTGGCGCTGGAGAAGCGCAAGCTGGATGC
GAAATATCGACAGACAGTAAAGGACGCTGGTCTCCACGCTCCTGCTGGTG
GTGGTGGGGGTGGTGGTGGTGGTGCTGCTACTTCTCCCGCGCTTTCTCTT
CGGAAGCAGGTCATCCGAGACTCGATGGCGAGAGGCCAGAGGAAGAGAGA
ACTGGCTTCAATGGCCGCGCTGGTGAACGCCAACGCAATTTTGAGGAAGC
AGGTAAGCGAGGAGAGAGCGAGGAGAGGGCTACGTACTCTTGCTCACTTC
AACGGTCTTTTTTTTTCATGCCAACAAAAAAACAGGCAACTGGAAATTTT
GTGCGACAAAGCATGCATAGGTTTTCTGATATGTTTTTGTTTGTGTATCT
CATGCGTAGCTACTGCCATGACCGCGCTGTTTGTGCCGACAACAGGGCAA
ACGTCAGAAAGAGAGGATCACCGTGCTCCGCGAGGAGGCAAAGAGTGCTC
TGAGGCCCTCGCCGCAATGA
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Coding sequence (CDS) from alignment at chr_00:5572211..5573030-

>Ec-00_004210.1 ID=Ec-00_004210.1|Name=Ec-00_004210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=627bp|location=Sequence derived from alignment at chr_00:5572211..5573030- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGATGGAAAATAGAGCGTCGCAAGCCAGGTACAACAAGCTCGTGCA
GAAAGCAGACGTCAAGGAGTTGACACGGAGCCACGACGCCGCAAAAGCGA
GAGCTGATGCCGTCCGCGTACAAAGGAACAAGGCGAATGCGACAAAGAGA
GAGGCGGAAAAACTAGCAGCAGCAGCAAACGTTGAAGCAAGCAAGCAACG
AGAGCTACGCCTGGGAGCAGCACAAGCGGCAGCGGCTGAGCACGAGAGCC
GAGTGAGGACGGAGAAGAAGCTGGAGAAGGAGCGCCAGCAAGTGCAGCGC
TTGACGGAGAAGCTGTCGGTGTTGGCGCTGGAGAAGCGCAAGCTGGATGC
GAAATATCGACAGACAGTAAAGGACGCTGGTCTCCACGCTCCTGCTGGTG
GTGGTGGGGGTGGTGGTGGTGGTGCTGCTACTTCTCCCGCGCTTTCTCTT
CGGAAGCAGGTCATCCGAGACTCGATGGCGAGAGGCCAGAGGAAGAGAGA
ACTGGCTTCAATGGCCGCGCTGGTGAACGCCAACGCAATTTTGAGGAAGC
AGGGCAAACGTCAGAAAGAGAGGATCACCGTGCTCCGCGAGGAGGCAAAG
AGTGCTCTGAGGCCCTCGCCGCAATGA
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Synonyms
The feature 'Ec-00_004210.1' has the following synonyms
Synonym
Esi0336_0027
Esi_0336_0027