Ec-00_004200.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004200.1
Unique NameEc-00_004200.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length287
Homology
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BLAST of Ec-00_004200.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 563 bits (1450), Expect = 1.540e-202
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 
Query:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLDMSESESESDVSAELSGEEDD 858
            MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLDMSESESESDVSAELSGEEDD
Sbjct:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLDMSESESESDVSAELSGEEDD 286
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BLAST of Ec-00_004200.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 1.770e-103
Identity = 161/256 (62.89%), Postives = 197/256 (76.95%), Query Frame = 1 
Query:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYG 768
            MD H   P     +++    +EGKWAG++KA EHAVG+E+ARA L+ALWPE  E AEW  W EEH+ L IL  DLSEA T  EKD+LTFGM+++LN SAEFR EVE YA SA EKKE+V DD D +N  PRVS F MIW+FPLLYEWA HAI  A IH+QLV S FS +DTCTQ+HDSREIDIVRLGQFRS+ SRR+++L+A+N EIR+AG+KAIA AR L+K+A+ A+PNERQ RKR HD  QF+R  + K+K+G
Sbjct:    9 MDMHQHLP-YSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDD-DAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHG 262
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BLAST of Ec-00_004200.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 9.180e-101
Identity = 170/274 (62.04%), Postives = 208/274 (75.91%), Query Frame = 1 
Query:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVL--DMSESES 816
            MD H   P     +++    +EGKWAG++KA EHAVG+E+ARA L+ALWPE NE AEW  W EEH+ L IL  DLSEA T  EKD+LTFGM+++LN SAEFR EVE Y+ SA EKKE+V DD D ++  PRVS F MIW+FPLLYEWARHAI  A IH+QLV SV S YDTCTQ+HDSREI IVRLGQFRS+QSRR+++LHA+N EIREAG+K IA AR L+K+A++A+PN+ Q RKR  D  QF+R  + K+K+G  W VRSVL  +MS  ES
Sbjct:  505 MDMHQHLP-YSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDD-DAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776
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BLAST of Ec-00_004200.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 4.600e-84
Identity = 146/271 (53.87%), Postives = 190/271 (70.11%), Query Frame = 1 
Query:   40 QVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLD---MSESESESDVSAELS 843
            +++    YEGKWAG+++  EHAVG+E ARALL+A WP + ES EW+ W+E++                  ++KLT GM+++L  SAEFR+E+E YAASAHEKK+VVSD +DV+N  PRVS F MIW FP LYEWA HA+F A IH+QLV S  S YDT TQ+HDSRE+DIVRLGQF S  SRR+ +L +SN EIR+ G+KAIA A  L+K+AS AVPNERQ R   HD  +F++  + K+K+G  W V+SV++    S  ESES+ S  LS
Sbjct:  167 RLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFR---------------ENKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSD-VDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEEVLSSSEESESEASENLS 421
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BLAST of Ec-00_004200.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.570e-28
Identity = 83/239 (34.73%), Postives = 121/239 (50.63%), Query Frame = 1 
Query:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPR-VSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKR 714
            M+RH   P L   ++     +       + A E AVG EFARA L   W    E     E + E+     L  DL   T    KD+LTFG+++ ++     R E+E YA S          D +VD   P+  SA   +++FPLLY+   H  +   IH+QL+ + FSK+D+C Q+ D  E+DIVR+G ++SA+SR I    A+  +IR AG K + +AR  +  +    P E   RKR
Sbjct:  234 MERHQQLP-LSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEPRTEREREYRTQ--LVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGW-------GDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
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BLAST of Ec-00_004200.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.560e-24
Identity = 76/231 (32.90%), Postives = 113/231 (48.92%), Query Frame = 1 
Query:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPN 693
            M RH   P L   ++     Y         A E AVG EFARA     WP   E     E + ++     L  DL   T    KD+LT G+++ ++     R E+E YA S    KE+       ++ P   SA   +++ PLLY    H  +   IH+QL+ + FSKYD+C ++ D  E+D+VR+G ++SA+SR I  + A + +IR AG K + EA   +  +    PN
Sbjct:  235 MQRHQELP-LSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEPRTERERQYRTQ--LAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEID------ESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456
The following BLAST results are available for this feature:
BLAST of Ec-00_004200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FXZ1_ECTSI1.540e-202100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSZ3_9PHAE1.770e-10362.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU73_9PHAE9.180e-10162.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE4.600e-8453.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI4.570e-2834.73Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JI13_9PHAE2.560e-2432.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5569597..5570457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length861
Hectar predicted targeting categoryother localisation
Gene idEc-00_004200.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004200Ec-00_004200Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5569597..5570457 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004200.1.1Ec-00_004200.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5569597..5570457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004200.1CDS:Ec-00_004200.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5569597..5570457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004200.1Ec-00_004200.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5569597..5570457 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004200.1 ID=Ec-00_004200.1|Name=Ec-00_004200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=287bp
MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWP
EKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAE
FRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARH
AIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKL
HASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTAT
NKAKYGPGWQVRSVLDMSESESESDVSAELSGEEDD*
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spliced messenger RNA

>Ec-00_004200.1 ID=Ec-00_004200.1|Name=Ec-00_004200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=861bp|location=Sequence derived from alignment at chr_00:5569597..5570457+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGACATGCATCAGCACCTCCCCTACAGCATGGCCAGGTTAGCTT
GCAGTTACTATACGAGGGCAAGTGGGCGGGGGCGGACAAGGCAAACGAGC
ATGCTGTAGGGAAGGAGTTTGCGCGGGCATTGCTAGTGGCGCTATGGCCT
GAGAAAAACGAGAGTGCTGAGTGGAGGGAGTGGCAGGAGGAGCATGACAT
TCTCGGAATTTTGGAGGGGGACCTCTCGGAGGCAACGACACCAGGAGAAA
AAGATAAGCTAACGTTTGGCATGTACACGGAGTTGAACGAGAGTGCTGAG
TTCAGAAAAGAGGTTGAGGTGTACGCCGCATCTGCGCACGAGAAGAAAGA
GGTTGTAAGCGACGACCTAGATGTTGACAATCCACCGCCGCGTGTCTCAG
CTTTTGGCATGATTTGGAACTTCCCTCTTTTATACGAATGGGCTCGTCAC
GCGATTTTCCTCGCTGTAATTCATGAACAGCTTGTGGGGAGCGTGTTTTC
AAAGTACGATACTTGCACGCAGCAGCACGACTCGAGGGAGATTGATATCG
TTCGCCTTGGCCAGTTCCGCTCGGCCCAGTCTAGGAGAATACGGAAGTTG
CACGCGTCCAACCATGAAATTCGGGAGGCAGGAAACAAGGCAATTGCCGA
AGCGAGAGCGTTGCGGAAAGCTGCCTCAGAAGCAGTTCCGAATGAGAGAC
AGCAGCGCAAACGCGGGCATGATGTAACCCAGTTTGTGAGGACTGCAACT
AATAAAGCTAAGTATGGCCCAGGGTGGCAGGTTAGGAGCGTGCTTGATAT
GTCGGAGTCGGAGTCTGAGAGTGATGTGTCCGCGGAGCTCAGCGGAGAGG
AGGATGATTAG
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protein sequence of Ec-00_004200.1

>Ec-00_004200.1 ID=Ec-00_004200.1|Name=Ec-00_004200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=287bp
MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWP
EKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAE
FRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARH
AIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKL
HASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTAT
NKAKYGPGWQVRSVLDMSESESESDVSAELSGEEDD*
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mRNA from alignment at chr_00:5569597..5570457+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004200.1 ID=Ec-00_004200.1|Name=Ec-00_004200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=861bp|location=Sequence derived from alignment at chr_00:5569597..5570457+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACCGACATGCATCAGCACCTCCCCTACAGCATGGCCAGGTTAGCTT
GCAGTTACTATACGAGGGCAAGTGGGCGGGGGCGGACAAGGCAAACGAGC
ATGCTGTAGGGAAGGAGTTTGCGCGGGCATTGCTAGTGGCGCTATGGCCT
GAGAAAAACGAGAGTGCTGAGTGGAGGGAGTGGCAGGAGGAGCATGACAT
TCTCGGAATTTTGGAGGGGGACCTCTCGGAGGCAACGACACCAGGAGAAA
AAGATAAGCTAACGTTTGGCATGTACACGGAGTTGAACGAGAGTGCTGAG
TTCAGAAAAGAGGTTGAGGTGTACGCCGCATCTGCGCACGAGAAGAAAGA
GGTTGTAAGCGACGACCTAGATGTTGACAATCCACCGCCGCGTGTCTCAG
CTTTTGGCATGATTTGGAACTTCCCTCTTTTATACGAATGGGCTCGTCAC
GCGATTTTCCTCGCTGTAATTCATGAACAGCTTGTGGGGAGCGTGTTTTC
AAAGTACGATACTTGCACGCAGCAGCACGACTCGAGGGAGATTGATATCG
TTCGCCTTGGCCAGTTCCGCTCGGCCCAGTCTAGGAGAATACGGAAGTTG
CACGCGTCCAACCATGAAATTCGGGAGGCAGGAAACAAGGCAATTGCCGA
AGCGAGAGCGTTGCGGAAAGCTGCCTCAGAAGCAGTTCCGAATGAGAGAC
AGCAGCGCAAACGCGGGCATGATGTAACCCAGTTTGTGAGGACTGCAACT
AATAAAGCTAAGTATGGCCCAGGGTGGCAGGTTAGGAGCGTGCTTGATAT
GTCGGAGTCGGAGTCTGAGAGTGATGTGTCCGCGGAGCTCAGCGGAGAGG
AGGATGATTAG
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Coding sequence (CDS) from alignment at chr_00:5569597..5570457+

>Ec-00_004200.1 ID=Ec-00_004200.1|Name=Ec-00_004200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=861bp|location=Sequence derived from alignment at chr_00:5569597..5570457+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACCGACATGCATCAGCACCTCCCCTACAGCATGGCCAGGTTAGCTT
GCAGTTACTATACGAGGGCAAGTGGGCGGGGGCGGACAAGGCAAACGAGC
ATGCTGTAGGGAAGGAGTTTGCGCGGGCATTGCTAGTGGCGCTATGGCCT
GAGAAAAACGAGAGTGCTGAGTGGAGGGAGTGGCAGGAGGAGCATGACAT
TCTCGGAATTTTGGAGGGGGACCTCTCGGAGGCAACGACACCAGGAGAAA
AAGATAAGCTAACGTTTGGCATGTACACGGAGTTGAACGAGAGTGCTGAG
TTCAGAAAAGAGGTTGAGGTGTACGCCGCATCTGCGCACGAGAAGAAAGA
GGTTGTAAGCGACGACCTAGATGTTGACAATCCACCGCCGCGTGTCTCAG
CTTTTGGCATGATTTGGAACTTCCCTCTTTTATACGAATGGGCTCGTCAC
GCGATTTTCCTCGCTGTAATTCATGAACAGCTTGTGGGGAGCGTGTTTTC
AAAGTACGATACTTGCACGCAGCAGCACGACTCGAGGGAGATTGATATCG
TTCGCCTTGGCCAGTTCCGCTCGGCCCAGTCTAGGAGAATACGGAAGTTG
CACGCGTCCAACCATGAAATTCGGGAGGCAGGAAACAAGGCAATTGCCGA
AGCGAGAGCGTTGCGGAAAGCTGCCTCAGAAGCAGTTCCGAATGAGAGAC
AGCAGCGCAAACGCGGGCATGATGTAACCCAGTTTGTGAGGACTGCAACT
AATAAAGCTAAGTATGGCCCAGGGTGGCAGGTTAGGAGCGTGCTTGATAT
GTCGGAGTCGGAGTCTGAGAGTGATGTGTCCGCGGAGCTCAGCGGAGAGG
AGGATGATTAG
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Synonyms
The feature 'Ec-00_004200.1' has the following synonyms
Synonym
Esi0336_0026
Esi_0336_0026