Ec-00_004180.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004180.1
Unique NameEc-00_004180.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length127
Homology
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BLAST of Ec-00_004180.1 vs. uniprot
Match: D7FXI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI3_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.800e-86
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 MESIAAAENSRQVNPAGVQRLTESIKSKGFMATTPPQIMFLDIGEDEHLAQDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVWVN 378
            MESIAAAENSRQVNPAGVQRLTESIKSKGFMATTPPQIMFLDIGEDEHLAQDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVWVN
Sbjct:    1 MESIAAAENSRQVNPAGVQRLTESIKSKGFMATTPPQIMFLDIGEDEHLAQDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVWVN 126
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BLAST of Ec-00_004180.1 vs. uniprot
Match: D7FHU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU2_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.240e-33
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:   79 SKGFMATTPPQIMFLDIGEDEHLAQDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVWV 375
            S+G    +P + + L  G D  L                + RQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASV TAVPYLGAKKRFSDD+AVWV
Sbjct:   73 SRGGGLVSPKKALHLATGVDHFLV---------------AHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWV 156
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BLAST of Ec-00_004180.1 vs. uniprot
Match: A0A6H5J8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.970e-24
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:  184 YIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVW 372
            Y+  + RQGD+FT N+KVIPQKFDG  RT EG+H PNTAAASVM  VPY+GAKKR SD+VAVW
Sbjct:   68 YLLIAHRQGDDFTYNDKVIPQKFDGCQRTDEGRHTPNTAAASVMNGVPYVGAKKRLSDNVAVW 130
The following BLAST results are available for this feature:
BLAST of Ec-00_004180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXI3_ECTSI1.800e-86100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHU2_ECTSI2.240e-3363.64Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J8R0_9PHAE9.970e-2471.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5362928..5366311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length381
Hectar predicted targeting categoryother localisation
Gene idEc-00_004180.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004180Ec-00_004180Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5362928..5366311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004180.1.3Ec-00_004180.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5362928..5362936 -
Ec-00_004180.1.2Ec-00_004180.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5363256..5363424 -
Ec-00_004180.1.1Ec-00_004180.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5366109..5366311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004180.1CDS:Ec-00_004180.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5362928..5362936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004180.1Ec-00_004180.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5362928..5366311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004180.1 ID=Ec-00_004180.1|Name=Ec-00_004180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=127bp
MESIAAAENSRQVNPAGVQRLTESIKSKGFMATTPPQIMFLDIGEDEHLA
QDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTA
AASVMTAVPYLGAKKRFSDDVAVWVN*
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spliced messenger RNA

>Ec-00_004180.1 ID=Ec-00_004180.1|Name=Ec-00_004180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=381bp|location=Sequence derived from alignment at chr_00:5362928..5366311- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCATCGCAGCGGCAGAGAACAGCAGGCAGGTCAACCCAGCTGG
TGTGCAGAGACTGACGGAGAGCATTAAGTCCAAGGGCTTCATGGCGACGA
CCCCACCGCAGATCATGTTCCTGGACATCGGGGAAGATGAACATCTGGCG
CAGGACATGGTGGACAACAAGCTGCGTGCCATCTACATCGACGGGAGCCG
CAGGCAAGGCGACAACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGT
TCGATGGCATGCTGCGTACGTCCGAGGGCAAGCACGACCCCAACACCGCC
GCTGCATCGGTGATGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTT
CTCCGACGACGTCGCCGTCTGGGTTAACTAG
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protein sequence of Ec-00_004180.1

>Ec-00_004180.1 ID=Ec-00_004180.1|Name=Ec-00_004180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=127bp
MESIAAAENSRQVNPAGVQRLTESIKSKGFMATTPPQIMFLDIGEDEHLA
QDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTA
AASVMTAVPYLGAKKRFSDDVAVWVN*
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mRNA from alignment at chr_00:5362928..5366311-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004180.1 ID=Ec-00_004180.1|Name=Ec-00_004180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3384bp|location=Sequence derived from alignment at chr_00:5362928..5366311- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGAGCATCGCAGCGGCAGAGAACAGCAGGCAGGTCAACCCAGCTGG
TGTGCAGAGACTGACGGAGAGCATTAAGTCCAAGGGCTTCATGGCGACGA
CCCCACCGCAGATCATGTTCCTGGACATCGGGGAAGATGAACATCTGGCG
CAGGACATGGTGGACAACAAGCTGCGTGCCATCTACATCGACGGGAGCCG
CAGGTGTGTGTTTTGATCAAGGGGGGATTGGACGGAAGTAGTGCGGAACA
AGCTGCCGGTTTGTCGTCATCATGCTCCTCGCAGTTGTCAGGATGAACCT
CTCTCTCGCAGTCATCACATACATACATCATCGTTGTCTACGTACCTGTG
CCCTCCTACATGCATGCATGAGTGCACGCAAGTCCATCTCAAATGACTGC
TGCGGTAGTACTGCGTGATGGAGGAAATGTATGCATACCATTTTTGGTAG
ACCTCGCGTGAAAATGTGGCGGTCGATGACAATTCGTCACGACCGAGTGC
AGCCAGCATTGATAAAGCTGCAATACTGAGAGCGTTCCTGTAGGCTTACG
CTCACCTACGTACTACGTACGTGCGTATGGCTTTCACCAGGAACATCCCA
CCCGCCTCAAACTTGCTGCTGATGCTGCTATGCATACATACGAGACAAAA
TCTCCAAATCTACGCAGCATGCCTGCAACACGTAGTAACGTGTTCTCCTG
TTCTTCTTCTTCACAACACAGGATCGAAACTCTCAAGTTGTTGGAGTGGG
CGGAACCCAACCGTTGCGTGTGCTATCGTAACATCAGCGACGTGGCCTTG
AGGGGGGTTCTGTTCTGACGGTGAGTAGATAGGGTTTACCCAAAAACTAC
CAAAGCCGGACGCAAGTCATTGGGGGGATTTGTCGTTGTTCGCGTTGACT
CAAAACTACAGTAGTAGTCTAGACCATAAATTTAGTATTTTTTTTTATTT
TTTTTTGTTCTTCACTTCAAATCAGCGCTCACAGCACTAGTGCCGTTTAT
TCCAACCCGTGGTCACACAGAAGAGCTCTCTCTACCCTCCCCTCCTGCGG
TACTTCGCCTTCAATTTTTAATGCGAGAAGAGTTCAGCACTCTCTTCCCT
CTGTGTACACACGAACTAGCGCTATCCACTTGGCCAGGAGCGGAAGCGAG
AGAAAAACTCACTTTTCAAGAAAAACTCGCCTACGCCGGGATTCGAACCC
CTGACCTGACCTCTAGAAGGTTACGAGGCTACCAACTAGACCACCGGGGC
GTCCGGCATACATAGTATGTAGGCTACTTGCCCATGGCACCGCCGTGAGC
GGCATGTATGGTGTTCCAGAAGACACTCAAACGTGTCGGAACCAATCTTC
TTCTTGTAGATAACAACAGGCACTTCATTATAGTATTACACCATACCCAC
ACTGAATGAAGTCTAGACGACATGATGTAGTGTCGTGTCGGCAAGAAATT
GTCCTGTTTGTCCTTCGGTTTTAACTTCGCCTGAAATGTACCTACCGGCC
CGCTCGGTGGGTTTAGTGCTTGGTCTAGTGGCGTCGAAACCGCCAGTGGC
AAAGTCGATTGTTCGAATCCCCCATGGCGTGGAAAATGTACAGCTAGCTA
CTCCGCGGGTGAGAGCGATAAACTCCGACGTCAGGACCGTCTCCTCCGAA
TTGGCTGGCTGGGCCCCTTTCACGATAAAAACGAAGATTCAACACGCACA
GCCGGTCGCCCCGGTGGTCAAGTAGTAACTTTAGAACCGTTCGTCGCAGA
GGTCGTGAGTTCGATTCCCCATCATGTGGAATAAGAACTAACTTGTGCGT
GCGTGAGAACGAAATACAGGTCGAAGCCCCGTGAGTGAGTAGATATTACC
AATTCTTCGACGTTAGCACCGTTGCTGTACCTTTCTCGCGACACAACACA
AATATTTTAGAACGCACATGAAGATGGTAGGGCACGAACAACAAAAGTAG
AACAAGAACAAACAAAGTTTGTATGTGGTATGTGATTTCCTCCGGTCTGT
CTGTGTGAGGGTAGAGGTAAAAAAAATACACGGGTGATAAGTAACTGTAG
CAACATGCACGGAACGAGAGTAACGTACGGAGTGGAGATACTTGGTCGGC
GCGAACCCAGCACGGAACCCTCCGGCGTTGTAGGTGGGTGTGGGAATTGT
TCTCCTTTGTGTTTATTTTGGTCGGTATTCTCGAGGCTCTCTTTCTCCCT
CGATGCGGTAGCTGGTCTTTCTTTCTATCATTTTGTTTTCTCTGGGGTTC
TTGTACCCCATTTTGTTTTCTCTGGGGTTCTTGTACCCCATTTTTTTTGT
TTTGTTTTCTTTCGCGGTGTCGTGTGTGCCGGGTTTTGAGACGAGCTCCT
CATTTTTTTGTGGGTTAGAGCTAATGTGAGAAAAACGACAACAAACAAAA
AAAAACGTATCCCCACCAAGATTGGACAATCGCTGTAATAAATAGGACGA
AAACAACAACACATACATTAATATATTTGCGGACCCCGCGGAGGTACGTG
CGCCTCTCCGCTTCGAACATTCGGCCCGAGCACTCACTATATTTTGGAGC
GAAAGTCAGTCGGGAGGACGATTTCGAATTTGTGGGTATGTTTCTCCTTC
GTTCGTGAAACACATCCCCCTCCTCCAGAAGAAGAATCGTTACCGCTGAG
CGGCGCGAAGCATGTGCGTCATCCTCCCCCGCGTTGACTATTTTCTCTCG
TGTCCTTCGTTCGGTCTGTAATCGTTTGTCGGAATCTTTCAGACTCCTTG
AGGCAGGTGGAGATGCAACTCACCCTCGAACAGCATGGCTTGGTCGTGGA
GTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCGAAGAAGGCGCTGCATC
TTGCAACCGGTGTCGATCACTTCCTCGTCGCACACAGGCAAGGCGACAAC
TTCACGTGCAACGAGAAGGTGATACCGCAAAAGTTCGATGGCATGCTGCG
TACGTCCGAGGGCAAGCACGACCCCAACACCGCCGCTGCATCGGTGATGA
CTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTTCTCCGACGACGTCGCC
GTCTGGGTGATTCAGCGGTTTGTGCATACTAGGAGACTTCCCTCCGTGCT
TTTTTCCTCTGTCCAAGTCCGGAGTAAAGTGCAATGCTGTCAAGCTTTTA
TTGGCATTCGAATCATGGGTGACCTAGAATACTTACAGGGCAGGGAATGT
TGACGCCGACGCAAGAGTAGTACCACTTCCGAGACAAGTGTCAGGCTGCG
TCACCTTGTTTTTTTCTTGTTTTTCGGCGACTGTGATGCACCGGCAAACA
CAGCTGCTCCAAACGTATCCTACGTGCTCAAAACACGCGCTGTCTGTCTG
TCTTTGCCGCTGCCCCCTCATTTAGGTTAACTAG
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Coding sequence (CDS) from alignment at chr_00:5362928..5366311-

>Ec-00_004180.1 ID=Ec-00_004180.1|Name=Ec-00_004180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=381bp|location=Sequence derived from alignment at chr_00:5362928..5366311- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGAGCATCGCAGCGGCAGAGAACAGCAGGCAGGTCAACCCAGCTGG
TGTGCAGAGACTGACGGAGAGCATTAAGTCCAAGGGCTTCATGGCGACGA
CCCCACCGCAGATCATGTTCCTGGACATCGGGGAAGATGAACATCTGGCG
CAGGACATGGTGGACAACAAGCTGCGTGCCATCTACATCGACGGGAGCCG
CAGGCAAGGCGACAACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGT
TCGATGGCATGCTGCGTACGTCCGAGGGCAAGCACGACCCCAACACCGCC
GCTGCATCGGTGATGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTT
CTCCGACGACGTCGCCGTCTGGGTTAACTAG
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Synonyms
The feature 'Ec-00_004180.1' has the following synonyms
Synonym
Esi0329_0016
Esi_0329_0016