Ec-00_004160.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004160.1
Unique Name	Ec-00_004160.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	241

Homology

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BLAST of Ec-00_004160.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 1.210e-160
Identity = 227/240 (94.58%), Postives = 233/240 (97.08%), Query Frame = 1

Query:    1 MAAMAMVTSSATTAKNVSFNLLPLEPLPVISPEAVCADWAAWVPPMSGPTVVMQVEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRICASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGDTR 720
            MAAMA+VTSSATTAKNVS +LLPLEPLP ISPEAVCADWAAWVPPMSGPTVVMQVEAGHDV+MSDADALWLADPMKDFSLPGVVGSSIVASRGS P +VGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWN+EDSDMRYTESTGFGVGFIDSLSD DNQPFTVTLLPHS YTRICASTPVSNTTVVAHC+SSKTPQSKADWMHRMDLWAVD DTR
Sbjct:   10 MAAMAIVTSSATTAKNVSLDLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQVEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDEDTR 249

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BLAST of Ec-00_004160.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 6.870e-74
Identity = 118/186 (63.44%), Postives = 143/186 (76.88%), Query Frame = 1

Query:  163 VEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRICASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGDTR 720
            VEAG DVIMSDADALWL DP KDF+LP V+ SS+VASRG  P  +G  WGAT+CMGF+LFR T  RV + EF+ VM+ALV + KDDQI+VN+AA +LGIVW++E SDMRY ES  FG G ID+L D++NQPF+VTLLPH+ YTR+C  TP+SN TVVAHC + KT  SK  WM +  LW  D +TR
Sbjct:  137 VEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRV-VGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQE-SDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNETR 320

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BLAST of Ec-00_004160.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.440e-47
Identity = 108/217 (49.77%), Postives = 128/217 (58.99%), Query Frame = 1

Query:  163 VEAGH-DVIMSDADALWLADPMKDFSLPGVVG-SSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVA-MREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQ----------------------------PFTVTLLPHSTYTRICASTPVSN-TTVVAHC-LSSKTPQSKADWMHRMDLWAVDGD 714
            +E G+ DVIMSDADALWLADP KD    G  G   IVASRGS P D    WG+T+CMGFILFR  A  VA M+ F+ VM  LV++ KDDQI+VN AA+ LGIVW +++SDMRY ESTG+G G I  L   +N                             PF VTLLPHS YTR+C    +SN TTVVAHC    K    K  WM + +LW+V  D
Sbjct:  129 LEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFR--ARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVW-DKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 342

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BLAST of Ec-00_004160.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.260e-46
Identity = 89/184 (48.37%), Postives = 117/184 (63.59%), Query Frame = 1

Query:  163 VEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRICASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGD 714
            + AG DV+MSDADA+WL DP  DF+    + S++VASR  +P  + H WGAT+CMGF  FR   S  AM+ F+TV+  +V E  DDQ AVN A   LG+VW+   SDM +T ST  G G I++++  +  P  VTLLPH+ YTR C  TP+SN T+VAHC+SS   +  A WM    LW +  D
Sbjct:  163 LNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGS--AMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPT-SDMDFTNSTRPGTGVIENIT-ANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDD 342

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BLAST of Ec-00_004160.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.270e-44
Identity = 88/187 (47.06%), Postives = 122/187 (65.24%), Query Frame = 1

Query:  154 VMQVEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRICASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGD 714
            V  ++AG DV+MSDADA+WL DPM DF       SSIVASRG++P  +   WGATICMGF+LFR  ++  A+ +F+ V+     E ++DQ AVN+A + L +VW+   SDM +++ST  GVG ++S+   ++   TV+LLPH+ YTR C  TP+S  TVVAHC+S+   +  A WM    LW V  D
Sbjct:  218 VCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPT-SDMSFSDSTRSGVGVVNSIYSGES--LTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPDD 399

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BLAST of Ec-00_004160.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.860e-43
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 1

Query:  163 VEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRICASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGD 714
            + AG DV+MSDADA+WL DP  D +    + S++VASR  +P  + H WGATICMGF  FR   S  AM+ F+TV+  +  E  +DQIAVN A   L +VW+   SDM +T++T  G G I++++  D     VTLLPH+ YTR C  TP+SN T+VAHC+SS   +  A WM    LW +  D
Sbjct:  238 LNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGS--AMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPM-SDMNFTDNTRPGTGVIENIT-VDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDD 417

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BLAST of Ec-00_004160.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 3.110e-42
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1

Query:  166 EAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAV 432
            EAGHDVIMSDADALWLADPMKDFSLPGV+ SSIVASRG  P +VG VWGAT+CMGFILFR TA+R AM +FVTVMNALV E +DDQIAV
Sbjct:   60 EAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148

[Close]

BLAST of Ec-00_004160.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.440e-18
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1

Query:  163 VEAGH-DVIMSDADALWLADPMKD-FSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVA-MREFVTVMNALVLEEKDDQIAVNIA 441
            +E GH DVIMSDADALWLADP KD FS  G     I+ASRGS P +    WG+T+CMGFI+FR  A  VA M+ F+ VM  LV++ KDDQ+    A
Sbjct:   79 LEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFR--ARNVAGMKRFLDVMADLVVQNKDDQMLCECA 172

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BLAST of Ec-00_004160.1 vs. uniprot
Match: A0A2J7TK26_METSI (Nucleotid_trans domain-containing protein n=1 Tax=Methylocella silvestris TaxID=199596 RepID=A0A2J7TK26_METSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.530e-9
Identity = 54/186 (29.03%), Postives = 83/186 (44.62%), Query Frame = 1

Query:  169 AGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSV-PTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDMRYTESTGFGVG-FIDSLSDKDNQPFTVTLLPHSTYTRICASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGDTR 720
            AG D++ SDADA+WL DP+   +      + +V ++G+V P++     G  +C G +  R+ A  +   EF   +  + ++ +DDQ AVN        VW   D        T F    FI + S KD     + +LPH  + R+     +     VAH L+      K D +    LW VD   R
Sbjct:   80 AGDDIVHSDADAVWLRDPLARLT---ATSADLVFTQGTVFPSETLQRRGFVVCCGLMFIRSNAGAI---EFWRNVRDVAVDVRDDQWAVNKVIDQSDCVWTLTDRYEAPCFDTVFHASRFIITGSMKD---LAIEVLPHHEFPRLME---LGENPFVAHPLADSPIDDKIDVLSESGLWFVDRPPR 253

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BLAST of Ec-00_004160.1 vs. uniprot
Match: A0A354V5R7_9PROT (Nucleotid_trans domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V5R7_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 4.620e-7
Identity = 59/199 (29.65%), Postives = 79/199 (39.70%), Query Frame = 1

Query:  145 PTVVMQVEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNEEDSDM----RYTESTGFGVGFIDSLS-----DKDNQPFTVTLLPHSTYTRIC-ASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDG 711
            P     V+ G+DV+MSDADA+WL DP+       V    IV      P  +   WG   C GF  FR      A  E     N ++    DDQ+ +N+A  D    W+ E  D     R  + +     F    +     D       +  LPH  + R    STPV +  VV H      P S  D + +M L  V G
Sbjct:  154 PVTHFLVKTGYDVVMSDADAVWLRDPVPYLRDADVAFQRIVYH----PPAIASQWGFAACGGFNAFRGGVKTTAFLERCVQENRILF---DDQVVLNLALLDEDPHWHCEHPDWTLPSRQNDRSALETAFARCANAPIRGDLKTSGLQLLALPHDKFWRHAFVSTPVRDM-VVCH------PNSPKDDLEKMQLLDVMG 338

The following BLAST results are available for this feature:

BLAST of Ec-00_004160.1 vs. uniprot

BLAST of Ec-00_004160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
D7G4E2_ECTSI	1.210e-160	94.58	Nucleotid_trans domain-containing protein n=2 Tax=...	[more]
A0A6H5LI82_9PHAE	6.870e-74	63.44	Nucleotid_trans domain-containing protein n=2 Tax=...	[more]
D8LK17_ECTSI	2.440e-47	49.77	Nucleotid_trans domain-containing protein n=1 Tax=...	[more]
A0A6H5KMQ8_9PHAE	4.260e-46	48.37	Nucleotid_trans domain-containing protein n=2 Tax=...	[more]
D8LSV3_ECTSI	2.270e-44	47.06	Nucleotid_trans domain-containing protein n=2 Tax=...	[more]
D7FGV6_ECTSI	1.860e-43	46.74	Acetyltransferase (Isoleucine patch superfamily pr...	[more]
D7FQM0_ECTSI	3.110e-42	82.02	Nucleotid_trans domain-containing protein n=1 Tax=...	[more]
A0A6H5JTX9_9PHAE	3.440e-18	56.25	Nucleotid_trans domain-containing protein n=1 Tax=...	[more]
A0A2J7TK26_METSI	8.530e-9	29.03	Nucleotid_trans domain-containing protein n=1 Tax=...	[more]
A0A354V5R7_9PROT	4.620e-7	29.65	Nucleotid_trans domain-containing protein n=1 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:5345420..5347311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	243.4
Seed ortholog evalue	1.1e-61
Seed eggNOG ortholog	2880.D8LSV4
Length	723
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004160.1
EggNOG free text desc.	Nucleotide-diphospho-sugar transferase
EggNOG OGs	2C6NG@1,2SGR5@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004160	Ec-00_004160	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 5345420..5347311 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004160.1.1	Ec-00_004160.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5345420..5345581 +
Ec-00_004160.1.2	Ec-00_004160.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5346544..5346810 +
Ec-00_004160.1.3	Ec-00_004160.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5347018..5347311 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004160.1	CDS:Ec-00_004160.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 5345420..5345581 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004160.1	Ec-00_004160.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 5345420..5347311 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:5345420..5347311+
coding sequence from alignment at chr_00:5345420..5347311+

mRNA sequence

>Ec-00_004160.1 ID=Ec-00_004160.1|Name=Ec-00_004160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=241bp
MAAMAMVTSSATTAKNVSFNLLPLEPLPVISPEAVCADWAAWVPPMSGPT
VVMQVEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVG
HVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARD
LGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRIC
ASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGDTR*

spliced messenger RNA

>Ec-00_004160.1 ID=Ec-00_004160.1|Name=Ec-00_004160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=723bp|location=Sequence derived from alignment at chr_00:5345420..5347311+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGATGGCCATGGTGACATCCTCCGCAACGACGGCGAAAAACGT
GTCGTTTAACCTGTTACCTTTGGAACCGCTGCCGGTGATTTCACCGGAAG
CAGTGTGCGCTGACTGGGCGGCCTGGGTTCCCCCCATGTCAGGACCCACG
GTTGTGATGCAGGTGGAAGCAGGTCATGATGTCATAATGTCGGATGCAGA
CGCCTTGTGGCTGGCGGACCCCATGAAAGACTTCTCGCTCCCTGGCGTTG
TCGGCAGCAGCATCGTTGCATCTAGAGGGAGTGTTCCGACAGACGTGGGT
CACGTGTGGGGGGCAACCATATGCATGGGTTTCATTTTGTTTCGAACGAC
TGCGAGCCGCGTCGCCATGCGAGAATTCGTCACCGTCATGAACGCGCTAG
TGCTCGAGGAAAAGGACGACCAGATCGCGGTGAACATAGCGGCCCGAGAC
TTGGGGATCGTGTGGAACGAGGAGGACAGTGATATGCGCTACACGGAAAG
CACTGGTTTTGGCGTGGGGTTCATCGATTCTCTTTCAGATAAAGACAATC
AACCCTTCACTGTGACGTTATTGCCTCACAGCACCTACACACGCATCTGT
GCGAGTACGCCCGTTTCGAACACAACCGTTGTGGCTCATTGTCTATCGTC
GAAAACACCTCAAAGCAAGGCTGACTGGATGCACAGGATGGACCTCTGGG
CAGTGGACGGAGATACCCGCTGA

protein sequence of Ec-00_004160.1

>Ec-00_004160.1 ID=Ec-00_004160.1|Name=Ec-00_004160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=241bp
MAAMAMVTSSATTAKNVSFNLLPLEPLPVISPEAVCADWAAWVPPMSGPT
VVMQVEAGHDVIMSDADALWLADPMKDFSLPGVVGSSIVASRGSVPTDVG
HVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARD
LGIVWNEEDSDMRYTESTGFGVGFIDSLSDKDNQPFTVTLLPHSTYTRIC
ASTPVSNTTVVAHCLSSKTPQSKADWMHRMDLWAVDGDTR*

mRNA from alignment at chr_00:5345420..5347311+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004160.1 ID=Ec-00_004160.1|Name=Ec-00_004160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1892bp|location=Sequence derived from alignment at chr_00:5345420..5347311+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGCGATGGCCATGGTGACATCCTCCGCAACGACGGCGAAAAACGT
GTCGTTTAACCTGTTACCTTTGGAACCGCTGCCGGTGATTTCACCGGAAG
CAGTGTGCGCTGACTGGGCGGCCTGGGTTCCCCCCATGTCAGGACCCACG
GTTGTGATGCAGGTATGTATGAGAAAGTGAACTCTCGTCATCTTCCACAA
ATGACGATACCCCCGCAACTTTGTCGTCGCTTGGACGTTTAGTTGTCGAT
TGTTCAGGTTAGATCGTGGCTGAAATGATGGAACCACAACATCCTGATTG
GGCTTGCCGTGTTGACAGCGTGTTACACGGTGGTGGAGTTGTCCTTCATT
CATGAACCGATGACAATTTTGCTTATCGATCCGCCGGAAGGTACGAAGCG
AGGCCAAACTCACACGATACATAGCGACCACAGGGTTTGCCCTGCTGTCG
TGCTGCTACTATATTTTTGTCCCTTCGTGCCCTGCTATGATTGAAGCAAT
TCGAAAATTCGACTTTGCGCCTGCCCAGGTAGTGAGCGGAACGTACATCG
ATGTGGAGCGCAACTTCATTTATTGGATGGAGCTCAAGACTTCATTTACT
CGCAACGACCTCTACCTTTTGTGCTTGGACGACGACTCTCTCCATTTCTT
CGAATCTTCAATGGGCATCCGTTGCCTTCCTCTTAGCAGGCTCAACATAA
AATCGCACACGAAAATCTGGGCATTTCGAGTTCGCGTGCTATCTTGCTTG
GTAAGCAGGGCGTGTCGTAGGCGTGGACGAGCGTTTTTCCTGAAGGACAT
GATCTAGAGACGCGACAAAAATTGACCGTGGCTGCAGAAATTGCAAACAC
TTGGTGTTGATAGCAAGCTGTTCACCTACCTCTGCGATATTTGGCCGAAT
TCATTGTTTGCCGCTGCACCGAGTTATCCACAGAACGATCAACCCAGGAA
CAGATAGCATGATCGTGCAGAAAAGCAGTTTTACAACGGAGGCGTAATTT
TACGGAAAGGCAGCGATCCGCGATGCTGATGACCCGACAAATGAGCGAGC
CTCGATGTTTATGCCGTGAATCTGACTCCCCACGTACCATCTCGACTACC
CCCCCCCGTCGACGATCGTCTCAGGTGGAAGCAGGTCATGATGTCATAAT
GTCGGATGCAGACGCCTTGTGGCTGGCGGACCCCATGAAAGACTTCTCGC
TCCCTGGCGTTGTCGGCAGCAGCATCGTTGCATCTAGAGGGAGTGTTCCG
ACAGACGTGGGTCACGTGTGGGGGGCAACCATATGCATGGGTTTCATTTT
GTTTCGAACGACTGCGAGCCGCGTCGCCATGCGAGAATTCGTCACCGTCA
TGAACGCGCTAGTGCTCGAGGAAAAGGACGACCAGATCGCGGTGTGTATG
GCGTTCGTTTGTTTCTTGACGCCTTATTTTCGTGAGAGCCAGATACTTGG
GTGCAAACATGGACAGGATAGTTTAGCGCGGTTTCCTTGTTGCTTGCGCC
AGTTTGTGCTTTGGGTCACGCGTTATATCGCAGTGAGAAGCTGTATGTTC
ACGAATGATGATGACCCTACCAACGACTGCGGACTGCACTCGCCTCAGGT
GAACATAGCGGCCCGAGACTTGGGGATCGTGTGGAACGAGGAGGACAGTG
ATATGCGCTACACGGAAAGCACTGGTTTTGGCGTGGGGTTCATCGATTCT
CTTTCAGATAAAGACAATCAACCCTTCACTGTGACGTTATTGCCTCACAG
CACCTACACACGCATCTGTGCGAGTACGCCCGTTTCGAACACAACCGTTG
TGGCTCATTGTCTATCGTCGAAAACACCTCAAAGCAAGGCTGACTGGATG
CACAGGATGGACCTCTGGGCAGTGGACGGAGATACCCGCTGA

Coding sequence (CDS) from alignment at chr_00:5345420..5347311+

>Ec-00_004160.1 ID=Ec-00_004160.1|Name=Ec-00_004160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=723bp|location=Sequence derived from alignment at chr_00:5345420..5347311+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGCGATGGCCATGGTGACATCCTCCGCAACGACGGCGAAAAACGT
GTCGTTTAACCTGTTACCTTTGGAACCGCTGCCGGTGATTTCACCGGAAG
CAGTGTGCGCTGACTGGGCGGCCTGGGTTCCCCCCATGTCAGGACCCACG
GTTGTGATGCAGGTGGAAGCAGGTCATGATGTCATAATGTCGGATGCAGA
CGCCTTGTGGCTGGCGGACCCCATGAAAGACTTCTCGCTCCCTGGCGTTG
TCGGCAGCAGCATCGTTGCATCTAGAGGGAGTGTTCCGACAGACGTGGGT
CACGTGTGGGGGGCAACCATATGCATGGGTTTCATTTTGTTTCGAACGAC
TGCGAGCCGCGTCGCCATGCGAGAATTCGTCACCGTCATGAACGCGCTAG
TGCTCGAGGAAAAGGACGACCAGATCGCGGTGAACATAGCGGCCCGAGAC
TTGGGGATCGTGTGGAACGAGGAGGACAGTGATATGCGCTACACGGAAAG
CACTGGTTTTGGCGTGGGGTTCATCGATTCTCTTTCAGATAAAGACAATC
AACCCTTCACTGTGACGTTATTGCCTCACAGCACCTACACACGCATCTGT
GCGAGTACGCCCGTTTCGAACACAACCGTTGTGGCTCATTGTCTATCGTC
GAAAACACCTCAAAGCAAGGCTGACTGGATGCACAGGATGGACCTCTGGG
CAGTGGACGGAGATACCCGCTGA

Synonyms

The feature 'Ec-00_004160.1' has the following synonyms


Synonym
Esi0329_0013
Esi_0329_0013